Geographical distribution of cryptic genetic types in the planktonic foraminifer Globigerinoides ruber

Molecular Ecology

Volumn 18, Issue 8, 2009, Pages 1692-1706

  Aurahs, Ralf ^a   Grimm, Guido W ^b   Hemleben, Vera ^a   Hemleben, Christoph ^a   Kucera, Michal ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

Competition; Cryptic diversity; Niche partitioning; Phylogeography; Planktonic foraminifera; SSU rDNA

Indexed keywords

RIBOSOME DNA;

ANIMAL; ARTICLE; ATLANTIC OCEAN; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; MEDITERRANEAN SEA; MOLECULAR EVOLUTION; PHYLOGENY; PLANKTON; POPULATION GENETICS; SEQUENCE ALIGNMENT;

ANIMALS; ATLANTIC OCEAN; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; MEDITERRANEAN SEA; PHYLOGENY; PLANKTON; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

FORAMINIFERA; GLOBIGERINOIDES RUBER;

EID: 63849249745     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04136.x     Document Type: Article

References (68)

1. Adl SM, Leander BS, Simpson AGB (2007) Diversity, nomenclature, and taxonomy of protists. Systematic Biology, 56, 684 689.
2. Alizon S, Kucera M, Jansen VAA (2008) Competition between cryptic species explains variation in rates of lineage evolution. Proceedings of the National Academy of Sciences, USA, 105, 12382 12386.
3. Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37 48.
4. Bé AWH (1959) Ecology of recent planktonic foraminifera. I. Areal distribution in the western North Atlantic. Micropaleontology, 5, 77 100.
5. Bryant D, Moulton V (2002) NeighborNet: an agglomerative method for the construction of planar phylogenetic networks. In : Algorithms in Bioinformatics, Second International Workshop, WABI. Rome, Italy (eds Guigó R, Gusfield D Springer-Verlag, Heidelberg, Germany, 2452, 375 391.
6. Chen G, Hare MP (2008) Cryptic ecological diversification of a planktonic estuarine copepod, Acartia tonsa. Molecular Ecology, 17, 1451 1468.
7. Darling KF, Kroon D, Wade CM, Brown AJL (1996) Molecular phylogeny of the planktic foraminifera. Journal of Foraminiferal Research, 26, 324 330.
8. Darling KF, Kucera M, Pudsey CJ, Wade CM (2004) Molecular evidence links cryptic diversification in polar planktonic protists to quaternary climate dynamics. Proceedings of the National Academy of Sciences, USA, 101, 7657 7662.
9. Darling KF, Kucera M, von Langen P, Pak D (2003) Seasonal distribution of genetic types of planktonic foraminifer morphospecies in the Santa Barbara Channel and its paleoceanographic implications. Paleoceanography, 18, 1032 1042.
10. Darling KF, Kucera M, Wade CM (2007) Global molecular phylogeography reveals persistent. Arctic circumpolar isolation in a marine planktonic protist. Proceedings of the National Academy of Sciences, USA, 104, 5002 5007.
11. Darling KF, Wade CM (2008) The genetic diversity of planktic foraminifera and the global distribution of ribosomal RNA genotypes. Marine Micropaleontology, 67, 216 238.
12. Darling KF, Wade CM, Kroon D, Brown AJL (1997) Planktic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa. Marine Micropaleontology, 30, 251 266.
13. Darling KF, Wade CM, Kroon D, Brown AJL, Bijma J (1999) The diversity and distribution of modern planktic foraminiferal small subunit ribosomal RNA genotypes and their potential as tracer of present and past ocean circulations. Paleoceanography, 14, 3 12.
14. Darling KF, Wade CM, Stewart IA et al 2000) Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers. Nature, 405, 43 47.
15. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783 791.
16. Fenchel T, Finlay BJ (2006) The diversity of microbes: resurgence of the phenotype. Philosophical Transactions of the Royal Society B: Biological Sciences, 361, 1965 1973.
17. Grimm GW, Stögerer K, Ertan KT et al. (2007) Diversity of rDNA in Chilostomella: Molecular differentiation patterns and putativ hermit types. Marine Micropaleontology, 62, 75 90.
18. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95 98.
19. Hamad N, Millot C, Taupier-Letage I (2005) A new hypothesis about the surface circulation in the eastern basin of the Mediterranean sea. Progress in Oceanography, 66, 287 298.
20. Hayes A, Rohling EJ, De Rijk S, Kroon D, Zachariasse WJ (1999) Mediterranean planktonic foraminiferal faunas during the last glacial cycle. Marine Geology, 153, 239 252.
21. Hecht AD (1976) An ecologic model for test size variation in recent planktonic foraminifera: applications to the fossil record. Journal of Foraminiferal Research, 6, 295 311.
22. Hemleben C, Spindler M, Anderson OR (1989) Modern Planktonic Foraminifera. Springer-Verlag, Heidelberg, Germany.
23. Hernandez-Leon S, Gomez M, Aristegui J (2007) Mesozooplankton in the Canary Current System: the coastal-ocean transition zone. Progress in Oceanography, 74, 397 421.
24. Holzmann M, Pawlowski J (1996) Preservation of foraminifera for DNA extraction and PCR amplification. Journal of Foraminiferal Research, 26, 264 267.
25. Huber BT, Bijma J, Darling KF (1997) Cryptic speciation in the living planktonic foraminifer Globigerinella siphonifera (d'Orbigny). Paleobiology, 23, 33 62.
26. Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254 267.
27. Irigoien X, Huisman J, Harris RP (2004) Global biodiversity patterns of marine phytoplankton and zooplankton. Nature, 429, 863 867.
28. Kawahata H (2005) Stable isotopic composition of two morphotypes of Globigerinoides ruber (white) in the subtropical gyre in the north pacific. Paleontological Research, 9, 27 35.
29. Kelly CK, Bowler MG, Pybus O, Harvey PH (2008) Phylogeny, niches, and relative abundance in natural communities. Ecology, 89, 962 970.
30. Knowlton N (1993) Sibling species in the sea. Annual Review of Ecological Systems, 24, 189 216.
31. Kucera M (2007) Planktonic foraminifera as tracers of past oceanic environments. In : Developments in Marine Geology, Volume 1, Proxies in Late Cenozoic Paleoceanography (Eds Hillaire-Marcel C, de Vernal A), pp. 213 262. Elsevier, Amsterdam.
32. Kucera M, Darling K (2002) Cryptic species of planktonic foraminifera: their effect on palaeoceanographic reconstructions. Philosophical Transactions of the Royal Society A: Physical Sciences, 360, 695 718.
33. Kucera M, Weinelt M, Kiefer T et al 2005) Reconstruction of sea-surface temperatures from assemblages of planktonic foraminifera: multi-technique approach based on geographically constrained calibration data sets and its application to glacial Atlantic and Pacific Oceans. Quaternary Science Reviewss, 24, 951 998.
34. Kuroyanagi A, Kawahata H (2004) Vertical distribution of living planktonic foraminifera in the seas around Japan. Marine Micropaleontology, 53, 173 196.
35. Kuroyanagi A, Tsuchiya M, Kawahata H, Kitazato H (2008) The occurrence of two genotypes of the planktonic foraminifer Globigerinoides ruber (white) and paleo-environmental implications. Marine Micropaleontology, 68, 236 243.
36. Lara E, Heger TJ, Ekelund F, Lamentowicz M, Mitchell EAD (2008) Ribosomal RNA genes challenge the monophyly of the hyalospheniidae (Amoebozoa: Arcellinida). Protist, 159, 165 176.
37. Leibold MA (2008) Return of the niche. Nature, 454, 39 41.
38. Lin HL, Hsieh HY (2007) Seasonal variations of modern planktonic foraminifera in the South China Sea. Deep Sea Research Part II: Tropical Studies in Oceanography, 54, 1634 1644.
39. Lin HL, Wang WC, Hung GW (2004) Seasonal variation of planktonic foraminiferal isotopic composition from sediment traps in the South China Sea. Marine Micropaleontology, 53, 447 460.
40. Logares R, Rengefors K, Kremp A et al 2007) Phenotypically different microalgal morphospecies with identical ribosomal DNA: a case of rapid adaptive evolution? Microbial Ecology, 53, 549 561.
41. Löwemark L, Hong WL, Yui TF, Hung GW (2005) A test of different factors influencing the isotopic signal of planktonic foraminifera in surface sediments from the northern South China Sea. Marine Micropaleontology, 55, 49 62.
42. Medlin LK, Sato S, Mann DG, Kooistra WHCF (2008) Molecular evidence confirms sister relationship of Ardissonea, Climacosphenia, and Toxarium within the bipolar centric diatoms (Bacillariophyta, Mediophycea), and cladistic analyses confirm that extremely elongated shape has arisen twice in the diatoms. Journal of Phycology, 44, 1340 1348.
43. Millot C (1999) Circulation in the Western Mediterranean Sea. Journal of Marine Systems, 20, 423 442.
44. Minin V, Abdo Z, Joyce P, Sullivan J (2003) Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology, 52, 674 683.
45. Moreira D, López-Garcia P (2002) The molecular ecology of microbial eukaryotes unveil a hidden world. Trends in Microbiology, 10, 31 38.
46. Norris RD (2000) Pelagic species diversity, biogeography, and evolution. Paleobiology, 26, 236 258.
47. d'Orbigny A (1839) Foraminifèrs. In : Histoire Physique et Naturelle de L'ile de Cuba (ed. de la Sagra Ramon), p. 82. Bertrand A, Paris.
48. Parker FL (1962) Planktonic foraminiferal species in Pacific sediments. Micropaleontology, 8, 219 254.
49. Robbins LL, Healy-Williams N (1991) Toward a classification of planktonic-foraminifera based on biochemical, geochemical, and morphological criteria. Journal of Foraminiferal Research, 21, 159 167.
50. Rogerson M, Rohling EJ, Weaver PPE, Murray JW (2004) The Azores Front since the Last Glacial Maximum. Earth and Planetary Science Letters, 222, 779 789.
51. Rynearson T, Armbrust V (2004) Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (Bacillariophyceae). Journal of Phycology, 40, 34 43.
52. Saito T, Thompson PR, Berger D (1981) Systematic Index of Recent and Pleistocene Planktonic Foraminifera. University of Tokyo Press, Tokyo, Japan.
53. Schiebel R, Schmuker B, Alves M, Hemleben C (2002) Tracking the recent and Late Pleistocene Azores front by the distribution of planktic foraminifers. Journal of Marine Systems, 37, 213 227.
54. Stamatakis A (2006) RAxML-VI-HPC: maximum-likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688 2690.
55. Steinke S, Chiu H, Yu P et al 2005) Mg/Ca ratios of two Globigerinoides ruber (white) morphotypes: implications for reconstructing past tropical/subtropical surface water conditions. Geochemistry Geophysics Geosystems, 6, Q11005.
56. Swofford DL (2002) paup*: Phylogenetic Analysis Using Parsimony (* and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
57. Thompson PR, Bé AWH, Duplessy JC, Shackleton NJ (1979) Disappearance of pink-pigmented Globigerinoides ruber at 120 000 yr BP in the Indian and Pacific Ocean. Nature, 280, 554 558.
58. Tolderlund DS, Bé AWH (1971) Seasonal distribution of planktonic foraminifera in the western North Atlantic. Micropaleontology, 17, 297 329.
59. de Vargas C, Bonzon M, Rees NW, Pawlowski J, Zaninetti L (2002) A molecular approach to biodiversity and biogeography in the planktonic foraminifer Globigerinella siphonifera (d'Orbigny). Marine Micropaleontology, 45, 101 116.
60. de Vargas C, Norris R, Zaninetti L, Gibb SW, Pawlowski J (1999) Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces. Proceedings of the National Academy of Sciences, USA, 96, 2864 2868.
61. de Vargas C, Pawlowski J (1998) Molecular versus taxonomic rates of evolution in planktonic foraminifera. Molecular Phylogenetics and Evolution, 9, 463 469.
62. de Vargas C, Renaud S, Hilbrecht H, Pawlowski J (2001) Pleistocene adaptive radiation in Globorotalia truncatulinoides: genetic, morphologic, and environmental evidence. Paleobiology, 27, 104 125.
63. de Vargas C, Sáez AG, Medlin LK, Thierstein HR (2004) Super-species in the calcareous plankton. In : Coccolithophores - from Molecular Processes to Global Impact (Eds Thierstein HR, Young J pp. 271 298. Springer-Verlag, Heidelberg, Germany.
64. de Vargas C, Zaninetti L, Hilbrecht H, Pawlowski J (1997) Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record. Journal of Molecular Evolution, 45, 285 294.
65. Wang LJ (2000) Isotopic signals in two morphotypes of Globigerinoides ruber (white) from the South China Sea: implications for monsoon climate change during the last glacial cycle. Palaeogeography, Palaeoclimatology, Palaeoecology, 161, 381 394.
66. Weisse T (2008) Distribution and diversity of aquatic protists: an evolutionary and ecological perspective. Biodiversity and Conservation, 17, 243 259.
67. Weyl PK (1978) Micropaleontology and ocean surface climate. Science, 202, 475 481.
68. Zaric S, Donner B, Fischer G, Mulitza S, Wefer G (2005) Sensitivity of planktic foraminifera to sea surface temperature and export production as derived from sediment trap data. Marine Micropaleontology, 55, 75 105.