Antifreeze Proteins. Their Structure, Binding and Use

Modern Biopolymer Science

Volumn , Issue , 2009, Pages 93-128

  Buckley, Sarah L ^a   Lillford, Peter J ^b  

^a University of York ^*

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 80054772999     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-374195-0.00003-3     Document Type: Chapter

References (113)

1. Ananthanarayanan V.S., Hew C.L. Synthetic polypeptide with antifreeze activity. Nature 1977, 268:560-561.
2. Antson A.A., Smith D.J., Roper D.I., Lewis S., Caves L.S.D., Verma C.S., Buckley S.L., Lillford P.J., Hubbard R.E. Understanding the mechanism of ice binding by type III antifreeze proteins. Journal of Molecular Biology 2001, 305:875-889.
3. Atkins P.W. Physical Chemistry 1990, Oxford University Press.
4. Baardsnes J., Kondejewski L.H., Hodges R.S., Chao H., Kay C., Davies P.L. New ice-binding face for type I antifreeze protein. Febs Letters 1999, 463:87-91.
5. Barnes W.H. The crystal structure of ice between 0°C and -183°C. Proceedings of Royal Society A 1929, 125:670.
6. Bowles D., Lillford P., Rees D. Coping with the cold. Phil. Trans. Roy. Soc. 2002, 357:1423.
7. Buckley H. Crystal Growth 1961, John Wiley and Sons, U.S.A.
8. Buckley S.L., Smith D.J., Clark A.H., Lillford P.J., Hubbard R.E. A Structural Model for the Activity of the Carrot Antifreeze Protein and its Binding to Ice. Cryobiology 2001, 43.
9. Chakrabartty A., Hew C.L. The Effect Of Enhanced Alpha-Helicity On The Activity Of A Winter Flounder Antifreeze Polypeptide. European Journal of Biochemistry 1991, 202:1057-1063.
10. Chakrabartty A., Yang D.S.C., Hew C.L. Structure-Function Relationship. In A Winter Flounder Antifreeze Polypeptide 2. Alteration Of The Component Growth-Rates Of Ice By Synthetic Antifreeze Polypeptides. Journal of Biological Chemistry 1989, 264:11313-11316.
11. Chao H., DeLuca C.I., Davies P.L. Mixing antifreeze protein types changes ice crystal morphology without affecting antifreeze activity. Febs Letters 1995, 357:183-186.
12. Chao H., Houston M.E., Hodges R.S., Kay C.M., Sykes B.D., Loewen M.C., Davies P.L., Sonnichsen F.D. A diminished role for hydrogen bonds in antifreeze protein binding to ice. Biochemistry 1997, 36:14652-14660.
13. Chao H., Sonnichsen F.D., DeLuca C.I., Sykes B.D., Davies P.L. Structure-function relationship in the globular type III antifreeze protein: Identification of a cluster of surface residues required for binding to ice. Protein Science 1994, 3:1760-1769.
14. Chapman J.W., Musters W., Van Wassenaar P.D. WO Patent No. 02343. World Intellectual Property Organisation 1997, International Bureau.
15. Chapman J.W., Van De Laar T., Lindner N.M., Visser C. US Patent No. 155956 2007, US Patent and Trademark Office, Washington D.C.
16. Chen L., de Vries A.L., Cheng C-H C. Convergent Evolution of Antifreeze Glycoproteins. Proc. Nat. Acad. Sci. 1997, 94(8):3811-3816.
17. Cheng A., Merz K.M. Ice-Binding Mechanism of Winter flounder Antifreeze Proteins. Biophysical Journal 1997, 73:2851-2873.
18. Cheng C.C., DeVries A.L. The Role of Antifreeze Glycopeptides and Peptides in the Freezing Avoidance of Cold-Water fish. Life Under Extreme conditions 1991, 1-14. Springer-Verlag, Berlin. Guido di Prisco (Ed.).
19. Clarke C.J., Buckley S.L., Lindner N. Ice Structuring Proteins. CryoLetters 2002, 23:89-92.
20. Daniel, A., Fenn, R.A., Oldroyd, J.R. (2001b). European Patent No. 1158865. European Patent Office.
21. Daniel, A., Lacy, I., Oldroyd, J.R. (2001a). European Patent No. 1158862. European Patent Office.
22. Daniel A., Oldroyd J.R. European Patent No. 1158864 2001, European Patent Office.
23. Davies P.L., Sykes B.D. Antifreeze Proteins. Current Opinion in Structural Biology 1997, 7:828-834.
24. DeLuca C.I., Chao H., Sonnichsen F.D., Sykes B.D., Davies P.L. Effect of type III antifreeze protein dilution and mutation on the growth inhibition of ice. Biophysical Journal 1996, 71:2346-2355.
25. DeLuca C.I., Davies P.L., Ye Q., Jia Z. The Effects of Steric Mutations on the Structure of Type III Antifreeze Protein and its Interaction with Ice. J. Mol. Biol. 1998, 275:515-525.
26. Deng G.J., Laursen R.A. Isolation and characterization of an antifreeze protein from the longhorn sculpin, Myoxocephalus octodecimspinosis. Biochimica et Biophysica Acta-Protein Structure and Molecular Enzymology 1998, 1388:305-314.
27. Deng G.J., Andrews D.W., Laursen R.A. Amino acid sequence of a new type of antifreeze protein: From the longhorn sculpin Myoxocephalus octodecimspinosis. Febs Letters 1997, 402:17-20.
28. DeVries A.L., Lin Q. The role of glycoprotein antifreezes in the survival of antarctic fishes. Adaptations within Antarctic Ecosystems 1977, 439-458.
29. DeVries A.L., Wohlschlag E.E. Freezing resistance in some antarctic fishes. Science 1969, 163:1073-1075.
30. DeVries A.L. Antifreeze Glycopeptides And Peptides - Interactions With Ice And Water. Methods in Enzymology 1986, 127:293-303.
31. DeVries A.L., Komatsu S.K., Feeney R.E. Chemical and physical properties of freezing point-depressing Glycoproteins from antarctic fish. J. Biol. chem. 1970, 245:2901-2908.
32. Doucet D., Tyshenko M.G., Kuiper M.J., Graether S.P., Sykes B.D., Daugulis A.J., Davies P.L., Walker V.K. Structure-function relationships in spruce budworm antifreeze protein revealed by isoform diversity. European Journal of Biochemistry 2000, 267:6082-6088.
33. Duman J.G., Olsen T.M. Thermal Hysteresis Protein Activity in Bacteria, Fungi and Phylogenetically Diverse Plants. Cryobiology 1993, 30:322-328.
34. Duman J.G. Purification And Characterization Of A Thermal Hysteresis Protein From A Plant, The Bittersweet Nightshade Solanum-Dulcamara. Biochimica et Biophysica Acta-Protein Structure and Molecular Enzymology 1994, 1206:129-135.
35. Eastman J.T., DeVries A.L. Antarctic Fishes. Scientific American 1986, 255:96-103.
36. Ewart K.V., Li Z.J., Yang D.S.C., Fletcher G.L., Hew C.L. The ice-binding site of Atlantic herring antifreeze protein corresponds to the carbohydrate-binding site of C-type lectins. Biochemistry 1998, 37:4080-4085.
37. Ewart K.V., Lin Q., Hew C.L. Structure, function and evolution of antifreeze proteins. Cellular and Molecular Life Sciences 1999, 55:271-283.
38. Feeney R.E., Yeh Y. Antifreeze Proteins: Properties, Mechansim of Action and Possible Applications. Food Technology 1993, 82-90.
39. Feeney R.E., Yeh Y. Antifreeze Proteins: Current Status and possible food uses. Trends in Food Science and Technology 1998, 9:102-106.
40. Fennema O.R., Powrie W.D., Marth E.H. Low Temperature Preservation of Foods and Living Matter. Marcel Dekker Inc 1973.
41. Fletcher G.L., Goddard S.V., Wu Y.L. Antifreeze proteins and their genes: From basic research to business opportunity. Chemtech 1999, 29:17-28.
42. Fletcher N.H. The Chemical Physics of Ice 1970, Cambridge University Press.
43. Graether S.P., Kuiper M.J., Gagne S.M., Walker V.K., Jia Z.C., Sykes B.D., Davies P.L. Beta-helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect. Nature 2000, 406:325-328.
44. Graham A.L., Davies P.L. Glycine Rich Antifreeze Proteins from Snow Fleas. Science 2005, 310:461-463.
45. Graham L.A., Liou Y.C., Walker V.K., Davies P.L. Hyperactive antifreeze protein from beetles. Nature 1997, 388:727-728.
46. Graham L.A., Liou Y.-C., Walker V.K., Davies P.L. US Patent No. 165383 2002, US Patent and Trademark Office, Washington D.C.
47. Graham L.A., Liou Y.-C., Walker V.K., Davies P.L. US Patent No. 116506 2006, US Patent and Trademark Office, Washington D.C.
48. Griffith M., Ewart K.V. Antifreeze Proteins and their potential use in Frozen Foods. Biotechnology Advances 1995, 13:375-402.
49. Griffith M., Ala P., Yang D.S.C., Hon W.C., Moffatt B.A. Antifreeze Protein Produced Endogenously In Winter Rye Leaves. Plant Physiology 1992, 100:593-596.
50. Harding M.M., Ward L.G., Haymet A.D.J. Type I 'antifreeze' proteins - Structure-activity studies and mechanisms of ice growth inhibition. European Journal of Biochemistry 1999, 264:653-665.
51. Haymet A.D.J., Ward L.G., Harding M.M. Winter flounder "antifreeze" proteins: Synthesis and ice growth inhibition of analogues that probe the relative importance of hydrophobic and hydrogen-bonding interactions. Journal of the American Chemical Society 1999, 121:941-948.
52. Holmberg N., Farres J., Bailey J.E., Kallio P.T. Targetted Expression of a synthetic codon optimised Gene. Gene 2001, 275(1):115-124.
53. Hon W.C., Griffith M., Chong P.L., Yang D.S.C. Extraction and Isolation Of Antifreeze Proteins From Winter Rye (Secale-Cereale L) Leaves. Plant Physiology 1994, 104:971-980.
54. Hoshino T., Kiriaki M., Tsuda S., Ohgiya S., Kondo H., Yokota Y., Yumoto I. US Patent No. 068470 2006, US Patent and Trademark Office, Washington D.C.
55. Jia Z., DeLuca C.I., Chao H., Davies P.L. Structural Basis for the binding of a globular antifreeze protein to ice. Nature 1996, 384:285-288.
56. Kao M.H., Fletcher G.L., Wang N.C., Hew C.L. The Relationship Between Molecular-Weight And Antifreeze Polypeptide Activity In Marine Fish. Canadian Journal of Zoology-Revue Canadienne de Zoologie 1986, 64:578-582.
57. Knight C.A., DeVries A.L. The Prevention of Ice Crystal Growth from Water by Antifreeze Proteins. Atmospheric Aerosols and Nucleation 1988, 717-720. Springer, Berlin.
58. Knight C.A., DeVries A.L. Effects of a polymeric, nonequilibrium "antifreeze" upon ice growth from water. Journal of Crystal Growth 1994, 143:301-310.
59. Knight C.A. Freezing of Supercooled Fluids. Van Nostrand Co 1967.
60. Knight C.A. Structural biology - Adding to the antifreeze agenda. Nature 2000, 406:249-251.
61. Knight C.A., Cheng C.C., DeVries A.L. Adsorption of α-helical antifreeze peptides on specific ice crystal surface planes. Biophysical Journal 1991, 59:409-418.
62. Knight C.A., DeVries A.L., Oolman L.D. Fish Antifreeze Protein and The freezing and recrystallization of ice. Nature 1984, 308:295-296.
63. Knight C.A., Driggers E., DeVries A.L. Adsorption To Ice Of Fish Antifreeze Glycopeptide-7 And Glycopeptide-8. Biophysical Journal 1993, 64:252-259.
64. Knight C.A., Hallett J., DeVries A.L. Solute Effects On Ice Recrystallization - An Assessment Technique. Cryobiology 1988, 25:55-60.
65. Knight C.A., Wen D.Y., Laursen R.A. Nonequilibrium Antifreeze Peptides And The Recrystallization Of Ice. Cryobiology 1995, 32:23-34.
66. Kobashigawa Y., Ohgiya S., Miura A., Tsuda S. WO Patent No. 072283 2004, Japanese Patent Office.
67. Kuiper M.J., Davies P.L., Walker V.K. A theoretical model of a plant antifreeze protein from Lolium perenne. Biophysical Journal 2001, 81:3560-3565.
68. Lal M., Clark A.H., Lips A., Ruddock J.N., White D.N.J. Inhibition Of Ice Crystal-Growth By Preferential Peptide Adsorption - A Molecular Modeling Study. Faraday Discussions 1993, 299-306.
69. Laursen R.A., Wen D., Knight C.A. Enantioselective Adsorption of the D- and L-Forms of an α-Helical Antifreeze Polypeptide to the {20-21} Planes of Ice. J Am Chem Soc. 1994, 116:12057-12058.
70. Lillford P.J., Holt C.B. Antifreeze Proteins. Journal of Food Engineering 1994, 22:475-482.
71. Lillford P.J., Mcarthur A.J., Sidebottom C.M., Wilding P. European Patent No. 0918863 1999, European Patent Office.
72. Litvak M.K. The development of winter flounder (Pleuronectes americanus) for aquaculture in Atlantic Canada: current status and future prospects. Aquaculture 1999, 176:55-64.
73. Loewen M.C., Davies P.L. Binding of an oligopeptide to a specific plane of ice. Journal of Biological Chemistry 1998, 273:11714-11718.
74. Madura J.D., Taylor M.S., Wierzbicki A., Harrington J.P., Sikes C.S., Sonnichsen F.D. The dynamics and binding of a Type III antifreeze proteins in water and on ice. Jounal of Molecular Structure 1996, 388:65-77.
75. Madura J.D., Wierzbicki A., Harrington J.P., Maughon R.H., Raymond J.A., Sikes C.S. Interactions of the D- and L-Forms of Winter Flounder Antifreeze Peptide with the {201} Planes of Ice. J Am Chem Soc. 1994, 116:417-418.
76. Magono C., Lee C. Meterological Classification of Natural Snow Crystals. J Fac Sci. 1966, 2:321-335.
77. Marshall C.B., Fletcher G.L., Davies P.L. Hyperactive Antifreeze Proteins in Fish. Nature 2004, 429:153-158.
78. Mason B.J. The Growth of Ice Crystals from the Vapour and Melt. Adv. Physics 1958, 7:235.
79. Megaw H.D. Cell Dimensions of Ordinary and Heavy Ice. Nature 1934, 134:900.
80. Melamed P., Gong Z.Y., Fletcher G., Hew C.L. The potential impact of modern biotechnology on fish aquaculture. Aquaculture 2002, 204:255-269.
81. Meyer K., Keil M., Naldrett M.J. A leucine-rich repeat protein of carrot that exhibits antifreeze activity. Febs Letters 1999, 447:171-178.
82. Muldrew K., Rewcastle J., Donnelly B.J., Saliken J.C., Liang S., Goldie S., Olson M., Baissalov R., Sandison G. Flounder antifreeze peptides increase the efficacy of cryosurgery. Cryobiology 2001, 42:182-189.
83. Mullin J. Crystallisation 1993, Ispwich Book Co. Ltd., Ipswich, England. Third Edition.
84. Nakaya U. Snow Crystals 1954, Harvard University Press.
85. Nishimiya Y., Tsuda S. European Patent No. 1334980 2003, European Patent Office.
86. Payne S.R., Sandford D., Harris A., Young O.A. The Effects Of Antifreeze Proteins On Chilled And Frozen Meat. Meat Science 1994, 37:429-438.
87. Raymond, J. A. and DeVries, A. L. (1977). Adsorption Inhibition As A Mechanism Of Freezing Resistance In Polar Fishes. Proceedings of the National Academy of Sciences of the United States of America, 74, 2589-2593.
88. Robinson C.H. Cold adaptation in Arctic and Antarctic fungi. New Phytologist 2001, 151:341-353.
89. Scholander P.F., Maggert J.E. Supercooling and Ice Propagation in Blood from Arctic fishes. Cryobiology 1971, 8:371-374.
90. Sicheri F., Yang D.S.C. Ice-binding structure and mechanism of an antifreeze protein from winter flounder. Nature 1995, 375:427-431.
91. Sidebottom C., Buckley S., Pudney P., Twigg S., Jarman C., Holt C., Telford J., McArthur A., Worrall D., Hubbard R., Lillford P. Phytochemistry - Heat-stable antifreeze protein from grass. Nature 2000, 406. 256.
92. Smaglik P. Angling for answers - How do antifreeze proteins work?. Scientist 1998, 12. 4.
93. Smith D.J. Molecular Modelling of Antifreeze Proteins 2000, PhD Thesis, University of York, UK.
94. Soltys K.A., Batta A.K., Koneru B. Successful nonfreezing, subzero preservation of rat liver with 2,3-butanediol and type I antifreeze protein. Journal of Surgical Research 2001, 96:30-34.
95. Sonnichsen F.D., Sykes B.D., Chao H., Davies P.L. The Nonhelical Structure of Antifreeze Protein Type III. Science 1993, 259:1154-1157.
96. Spanenburg G., Ulrick P.J., Polotonianka R.M. Ice Recrystallisation Inhibition Proteins from Deschampsia, Lolium and Festuca Species of Grasses 2007, US Patent. 2007/0250946.
97. Tiller W.A. The Scince of Crystallisation, Macroscopic Phenomena and Defect Generation 1991, 231-364. Cambridge University Press.
98. Trivedi R., Kurz W. Dendritic Growth. International Materials Reviews 1994, 39:49.
99. Tyshenko M.G., Davies P.L., Walker V.K., Rahavard M. Canadian Patent No. 2257115 1997, CIPO Canadian Intellectual Property Office.
100. Tyshenko M.G., Doucet D., Davies P.L., Walker V.K. The antifreeze ptential of the spruce budworm thermal hysteresis protein. Nature Biotechnology 1997, 15:887-890.
101. Uchida T., Ikeda I., Omura A., Tsuda S., Miura K., Ebinuma T. Japanese Patent No. 089353 2005, Japanese Patent Office.
102. Urrutia M.E., Duman J.G., Knight C.A. Plant Thermal Hysteresis Proteins. Biochimica et Biophysica Acta 1992, 1121:199-206.
103. Voituron Y., Storey J.M., Grenot C., Storey K.B. Freezing survival, body ice content and blood composition of the freeze-tolerant European common lizard, Lacerta vivipara. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 2002, 172:71-76.
104. Wang X., DeVries A.L., Cheng C.C. Antifreeze peptide hetrogenity in an antarctic eel pout includes an unusually large major variant comprised of two 7 KDa type III AFPs linked in tandem. Biochimica et Biophysica Acta 1995, 1247:163-172.
105. Wen, D. Y. and Laursen, R. A. (1992b). Structure-Function-Relationships In An Antifreeze Polypeptide - The Role Of Neutral, Polar Amino-Acids. Journal of Biological Chemistry, 267, 14102-14108.
106. Wierzbicki A., Taylor M.S., Knight C.A., Madura J.D., Harrington J.P., Sikes C.S. Analysis of Shorthorn Sculpin Antifreeze Protein Stereospecific Binding of (2-10) Faces of Ice. Biophysical Journal 1996, 71:8-18.
107. Worrall D., Elias L., Ashford D., Smallwood M., Sidebottom C., Lillford P., Telford J., Holt C., Bowles D. A carrot leucine-rich-repeat protein that inhibits ice recrystallization. Science 1998, 282:115-117.
108. Wu D.W., Duman J.G., Cheng C.H.C., Castellino F.J. Purification And Characterization Of Antifreeze Proteins From Larvae Of The Beetle Dendroides-Canadensis. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 1991, 161:271-278.
109. Wulff G. Zur Frage der Geshwindigkeit des Wachtums und Auflosung der Krystallflachen. Z.Krystallogr. 1901, 34:449-530.
110. Yang D.S.C., Hon W.-C., Bubanko S., Xue Y., Seetharaman J., Hew C.L., Sicheri F. Identification of the ice binding surface on a type III AFP with a "Flatness Function" Algorithm. Biophysical Journal 1998, 74:2142-2151.
111. Yeh Y., Feeney R.E. Antifreeze Proteins: Structures and Mechanisms of Function. Chemical Reviews 1996, 96:601-617.
112. Yu Z.-W., Yu W., DeVries A.L., Cheng C.C. Fluorescent Microscopic Imaging of Antifreeze Protein Adsorption to Ice. Biophysical Journal 1998, 2(2):A370.
113. Zhong K.D. Chinese Patent No. 1772898 2006, Chinese Patent Office.