Understanding the mechanism of ice binding by type III antifreeze proteins

Journal of Molecular Biology

Volumn 305, Issue 4, 2001, Pages 875-889

  Antson, Alfred A ^a   Smith, Derek J ^a   Roper, David I ^a   Lewis, Sally ^a   Caves, Leo S D ^a   Verma, Chandra S ^a   Buckley, Sarah L ^b   Lillford, Peter J ^b   Hubbard, Roderick E ^a  

^a UNIVERSITY OF YORK   (United Kingdom)

^b UNILEVER RESEARCH   (United Kingdom)

Author keywords

AFP; Antifreeze; Ice etching; Molecular modelling; X ray crystallography

Indexed keywords

ANTIFREEZE PROTEIN; ICE; RECOMBINANT PROTEIN;

ANISOTROPY; ARTICLE; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; X RAY ANALYSIS;

PISCES;

EID: 0035951306     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4336     Document Type: Article

References (60)

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3. Spatially constrained minimization of macromolecules
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7. The role of antifreeze glycopeptides and peptides in the freezing avoidance of cold-water fish
8. Use of proline mutants to help solve the NMR solution structure of type III AFP
9. Structure-function relationship in the globular type III AFP: Identification of a cluster of surface residues required for binding to ice
10. A diminished role for hydrogen bonds in AFP binding to ice
11. The CCP4 suite: Programs for protein crystallography
12. Phase combination and cross-validation in iterated density-modification calculations
13. Biochemistry of fish AFPs
14. Effect of type III AFP dilution and mutation on the growth inhibition of ice
15. Antifreeze peptides and glyco-proteins in cold-water fishes
16. Quantitative and qualitative analysis of type III AFP structure and function
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18. Winter flounder "antifreeze" proteins-synthesis and ice growth inhibition of analogues that probe the relative importance on hydrophobic and hydrogen bonding interactions
19. Unit cells for the simulation of hexagonal ice
20. Protein interaction with ice
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22. Crystallisation and preliminary X-ray crystallographic studies on type III AFP
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24. Comparison of simple potential functions for simulating liquid water
25. A simple technique for growing large, optically "perfect" ice crystals
26. The prevention of ice crystal growth from water by "AFPs"
27. Adsorption of α-helical antifreeze peptides on specific ice crystal surface planes
28. Adsorption of ice of fish antifreeze glycopeptides 7 and 8
29. MOLSCRIPT - A program to produce both detailed and schematic plots of protein structures
30. Automated refinement of protein models
31. PROCHECK: A program to check the stereochemical quality of protein structures
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33. AFPs
34. The effects of truncating long-range forces on protein dynamics
35. The dynamics and binding of a Type III antifreeze protein in water and on ice
36. Molecular recognition and binding of thermal hysteresis proteins to ice
37. Solvent content of protein crystals
38. Application of maximum likelihood methods for macromolecular refinement
39. Simulation of activation free-energies in molecular-systems
40. Maximum likelihood refinement of heavy atom parameters
41. Oscillation data reduction program
42. A single-crystal neutron diffraction study of heavy ice
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44. Inhibition of growth of non-basal planes in ice by fish antifreezes
45. Primary and secondary structure of antifreeze peptides from arctic and antarctic zoarcid fishes
46. Wolffish AFP genes are primarily organized as tandem repeats that each contain 2 genes in inverted orientation
47. Phase annealing in SHELX-90-direct methods for larger structures
48. SHELXL: High-resolution refinement
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50. Phytochemistry-heat-stable antifreeze protein from grass
51. The nonhelical structure of AFP type III
52. Refined solution structure of type III AFP: Hydrophobic groups may be involved in the energetics of the protein-ice interaction
53. Antifreeze peptide heterogeneity in an antarctic eel pout includes an unusually large major variant comprised of two 7 kDa type III AFPs linked in tandem
54. Analysis of shorthorn sculpin AFP stereospecific binding to ice
55. Crystal structure of an antifreeze polypeptide and its mechanistic implications
56. Identification of the ice-binding surface on a type III AFP with a "flatness function" algorithm
57. Structure of type III AFP at 277 K
58. AFPs: Structure and mechanism of function