-
1
-
-
66749136930
-
Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
-
Merhej V, Royer-Carenzi M, Pontarotti P et al. Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct 2009; 4: 13.
-
(2009)
Biol Direct
, vol.4
, pp. 13
-
-
Merhej, V.1
Royer-Carenzi, M.2
Pontarotti, P.3
-
2
-
-
40349087151
-
Predicting prokaryotic ecological niches using genome sequence analysis
-
Suen G, Goldman BS, Welch RD. Predicting prokaryotic ecological niches using genome sequence analysis. PLoS ONE 2007; 2: e743.
-
(2007)
PLoS ONE
, vol.2
-
-
Suen, G.1
Goldman, B.S.2
Welch, R.D.3
-
3
-
-
76249102181
-
Network analyses structure genetic diversity in independent genetic worlds
-
Halary S, Leigh JW, Cheaib B et al. Network analyses structure genetic diversity in independent genetic worlds. Proc Natl Acad Sci USA 2010; 107: 127-32.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 127-132
-
-
Halary, S.1
Leigh, J.W.2
Cheaib, B.3
-
4
-
-
33847151750
-
The antibiotic resistome: the nexus of chemical and genetic diversity
-
Wright GD. The antibiotic resistome: the nexus of chemical and genetic diversity. Nat Rev Microbiol 2007; 5: 175-86.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 175-186
-
-
Wright, G.D.1
-
5
-
-
59649109572
-
Antibiotic resistance genes from the environment: a perspective through newly identified antibiotic resistance mechanisms in the clinical setting
-
Canton R. Antibiotic resistance genes from the environment: a perspective through newly identified antibiotic resistance mechanisms in the clinical setting. Clin Microbiol Infect 2009; 15 Suppl 1: 20-5.
-
(2009)
Clin Microbiol Infect
, vol.15
, Issue.SUPPL 1
, pp. 20-25
-
-
Canton, R.1
-
6
-
-
79953293014
-
Characterization of novel antibiotic resistance genes identified by functional metagenomics on soil samples
-
Torres-Cortes G, Millan V, Ramirez-Saad HC et al. Characterization of novel antibiotic resistance genes identified by functional metagenomics on soil samples. Environ Microbiol 2011; 13: 1101-14.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1101-1114
-
-
Torres-Cortes, G.1
Millan, V.2
Ramirez-Saad, H.C.3
-
7
-
-
4344587758
-
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
-
Riesenfeld CS, Goodman RM, Handelsman J. Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 2004; 6: 981-9.
-
(2004)
Environ Microbiol
, vol.6
, pp. 981-989
-
-
Riesenfeld, C.S.1
Goodman, R.M.2
Handelsman, J.3
-
8
-
-
79952306616
-
Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples
-
Colomer-Lluch M, Jofre J, Muniesa M. Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples. PLoS ONE 2011; 6: e17549.
-
(2011)
PLoS ONE
, vol.6
-
-
Colomer-Lluch, M.1
Jofre, J.2
Muniesa, M.3
-
9
-
-
79955025122
-
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
-
Goodman AL, Kallstrom G, Faith JJ et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc Natl Acad Sci USA 2011; 108: 6252-7.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 6252-6257
-
-
Goodman, A.L.1
Kallstrom, G.2
Faith, J.J.3
-
10
-
-
79959279205
-
Horizontal transfer of the OXA-24 carbapenemase gene via outer membrane vesicles: a new mechanism of dissemination of the carbapenem resistance genes in Acinetobacter baumannii
-
Rumbo C, Fernandez-Moreira E, Merino M et al. Horizontal transfer of the OXA-24 carbapenemase gene via outer membrane vesicles: a new mechanism of dissemination of the carbapenem resistance genes in Acinetobacter baumannii. Antimicrob Agents Chemother 2011; 55: 3084-90.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 3084-3090
-
-
Rumbo, C.1
Fernandez-Moreira, E.2
Merino, M.3
-
11
-
-
66149151286
-
Viruses manipulate the marine environment
-
Rohwer F, Thurber RV. Viruses manipulate the marine environment. Nature 2009; 459: 207-12.
-
(2009)
Nature
, vol.459
, pp. 207-212
-
-
Rohwer, F.1
Thurber, R.V.2
-
13
-
-
79955559191
-
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
-
Luo C, Walk ST, Gordon DM et al. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci USA 2011; 108: 7200-5.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7200-7205
-
-
Luo, C.1
Walk, S.T.2
Gordon, D.M.3
-
14
-
-
4544321685
-
Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
-
Brussow H, Canchaya C, Hardt WD. Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 2004; 68: 560-602.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 560-602
-
-
Brussow, H.1
Canchaya, C.2
Hardt, W.D.3
-
15
-
-
2542539918
-
Bacteriophages and diffusion of b-lactamase genes
-
Muniesa M, Garcia A, Miro E et al. Bacteriophages and diffusion of b-lactamase genes. Emerg Infect Dis 2004; 10: 1134-7.
-
(2004)
Emerg Infect Dis
, vol.10
, pp. 1134-1137
-
-
Muniesa, M.1
Garcia, A.2
Miro, E.3
-
17
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
Sommer MO, Dantas G, Church GM. Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 2009; 325: 1128-31.
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.1
Dantas, G.2
Church, G.M.3
-
18
-
-
77954645549
-
Detection and accurate identification of new or emerging bacteria in cystic fibrosis patients
-
Bittar F, Rolain JM. Detection and accurate identification of new or emerging bacteria in cystic fibrosis patients. Clin Microbiol Infect 2010; 16: 809-20.
-
(2010)
Clin Microbiol Infect
, vol.16
, pp. 809-820
-
-
Bittar, F.1
Rolain, J.M.2
-
20
-
-
51449098793
-
Molecular detection of multiple emerging pathogens in sputa from cystic fibrosis patients
-
Bittar F, Richet H, Dubus JC et al. Molecular detection of multiple emerging pathogens in sputa from cystic fibrosis patients. PLOS One 2008; 3: e2908.
-
(2008)
PLOS One
, vol.3
-
-
Bittar, F.1
Richet, H.2
Dubus, J.C.3
-
21
-
-
38049129070
-
Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis
-
Harris JK, De Groote MA, Sagel SD et al. Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis. Proc Natl Acad Sci USA 2007; 104: 20529-33.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 20529-20533
-
-
Harris, J.K.1
De Groote, M.A.2
Sagel, S.D.3
-
22
-
-
70350545933
-
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
-
Willner D, Furlan M, Haynes M et al. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS ONE 2009; 4: e7370.
-
(2009)
PLoS ONE
, vol.4
-
-
Willner, D.1
Furlan, M.2
Haynes, M.3
-
23
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa K, Itoh T, Kuwahara T et al. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 2007; 14: 169-81.
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
-
24
-
-
65549125874
-
Horizontal gene transfer and mobile genetic elements in marine systems
-
Sobecky PA, Hazen TH. Horizontal gene transfer and mobile genetic elements in marine systems. Methods Mol Biol 2009; 532: 435-53.
-
(2009)
Methods Mol Biol
, vol.532
, pp. 435-453
-
-
Sobecky, P.A.1
Hazen, T.H.2
-
25
-
-
3142514466
-
The impact of prophages on bacterial chromosomes
-
Canchaya C, Fournous G, Brussow H. The impact of prophages on bacterial chromosomes. Mol Microbiol 2004; 53: 9-18.
-
(2004)
Mol Microbiol
, vol.53
, pp. 9-18
-
-
Canchaya, C.1
Fournous, G.2
Brussow, H.3
-
26
-
-
0026056218
-
Morphology of Pseudomonas aeruginosa phages from the sputum of cystic fibrosis patients and from the phage typing set. An electron microscopy study
-
Ojeniyi B, Birch-Andersen A, Mansa B et al. Morphology of Pseudomonas aeruginosa phages from the sputum of cystic fibrosis patients and from the phage typing set. An electron microscopy study. APMIS 1991; 99: 925-30.
-
(1991)
APMIS
, vol.99
, pp. 925-930
-
-
Ojeniyi, B.1
Birch-Andersen, A.2
Mansa, B.3
-
27
-
-
77950499604
-
Fluctuations in phenotypes and genotypes within populations of Pseudomonas aeruginosa in the cystic fibrosis lung during pulmonary exacerbations
-
Fothergill JL, Mowat E, Ledson MJ et al. Fluctuations in phenotypes and genotypes within populations of Pseudomonas aeruginosa in the cystic fibrosis lung during pulmonary exacerbations. J Med Microbiol 2010; 59: 472-81.
-
(2010)
J Med Microbiol
, vol.59
, pp. 472-481
-
-
Fothergill, J.L.1
Mowat, E.2
Ledson, M.J.3
-
28
-
-
58149507650
-
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
-
Holden MT, Seth-Smith HM, Crossman LC et al. The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol 2009; 191: 261-77.
-
(2009)
J Bacteriol
, vol.191
, pp. 261-277
-
-
Holden, M.T.1
Seth-Smith, H.M.2
Crossman, L.C.3
-
29
-
-
61449134105
-
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa
-
Winstanley C, Langille MG, Fothergill JL et al. Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. Genome Res 2009; 19: 12-23.
-
(2009)
Genome Res
, vol.19
, pp. 12-23
-
-
Winstanley, C.1
Langille, M.G.2
Fothergill, J.L.3
-
30
-
-
58849147968
-
Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage
-
Rolain JM, Francois P, Hernandez D et al. Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage. Biol Direct 2009; 4: 1.
-
(2009)
Biol Direct
, vol.4
, pp. 1
-
-
Rolain, J.M.1
Francois, P.2
Hernandez, D.3
-
31
-
-
78650660379
-
Effect of antibiotic treatment on bacteriophage production by a cystic fibrosis epidemic strain of Pseudomonas aeruginosa
-
Fothergill JL, Mowat E, Walshaw MJ et al. Effect of antibiotic treatment on bacteriophage production by a cystic fibrosis epidemic strain of Pseudomonas aeruginosa. Antimicrob Agents Chemother 2011; 55: 426-8.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 426-428
-
-
Fothergill, J.L.1
Mowat, E.2
Walshaw, M.J.3
-
32
-
-
77955033013
-
Deciphering the role of phage in the cystic fibrosis airway
-
Willner D, Furlan M. Deciphering the role of phage in the cystic fibrosis airway. Virulence 2010; 1: 309-13.
-
(2010)
Virulence
, vol.1
, pp. 309-313
-
-
Willner, D.1
Furlan, M.2
-
33
-
-
80054690786
-
Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota
-
doi:10.1093/jac/dkr315
-
Fancello L, Desnues C, Raoult D et al. Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota. J Antimicrob Chemother 2011; doi:10.1093/jac/dkr315.
-
(2011)
J Antimicrob Chemother
-
-
Fancello, L.1
Desnues, C.2
Raoult, D.3
-
34
-
-
44249126241
-
Collateral effects of antibiotics: carbadox and metronidazole induce VSH-1 and facilitate gene transfer among Brachyspira hyodysenteriae strains
-
Stanton TB, Humphrey SB, Sharma VK et al. Collateral effects of antibiotics: carbadox and metronidazole induce VSH-1 and facilitate gene transfer among Brachyspira hyodysenteriae strains. Appl Environ Microbiol 2008; 74: 2950-6.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2950-2956
-
-
Stanton, T.B.1
Humphrey, S.B.2
Sharma, V.K.3
-
35
-
-
74549151848
-
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
-
Boyer M, Yutin N, Pagnier I et al. Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci USA 2009; 106: 21848-53.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21848-21853
-
-
Boyer, M.1
Yutin, N.2
Pagnier, I.3
|