Characterization of a Mycobacterium smegmatis uvrA mutant impaired in dormancy induced by hypoxia and low carbon concentration

BMC Microbiology

Volumn 11, Issue , 2011, Pages

  Cordone, Angela ^a,b   Audrain, Bianca ^b,c   Calabrese, Immacolata ^a   Euphrasie, Daniel ^b  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b INSERM   (France)

^c INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; BACTERIAL PROTEIN; DEOXYRIBONUCLEASE; OXYGEN;

ADAPTATION; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM ISOLATION; BACTERIUM MUTANT; DNA REPAIR; DORMANCY; EXCISION REPAIR; GENE MAPPING; GENE MUTATION; HYPOXIA; MYCOBACTERIUM SMEGMATIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; ORTHOLOGY; OXIDATIVE STRESS; PHENOTYPE; SURVIVAL RATE; TRANSPOSON; ULTRAVIOLET IRRADIATION; UVRA GENE; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTAGENESIS; MUTATION;

BACILLI (CLASS); MYCOBACTERIUM SMEGMATIS; MYCOBACTERIUM TUBERCULOSIS;

BACTERIAL PROTEINS; CARBON; ENDODEOXYRIBONUCLEASES; GENE EXPRESSION REGULATION, BACTERIAL; MUTAGENESIS; MUTATION; MYCOBACTERIUM SMEGMATIS; OXIDATIVE STRESS; OXYGEN;

EID: 80054121400     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-11-231     Document Type: Article

References (39)

1. Latent Mycobacterium tuberculosis-persistence, patience, and winning by waiting. Manabe YC, Bishai WR, Nat Med 2000 1327 1329 (Pubitemid 32001014)
2. M. tuberculosis persistence, latency, and drug tolerance. Gomez JE, McKinney JD, Tuberculosis 2004 84 29 44 10.1016/j.tube.2003.08.003 14670344 (Pubitemid 38082931)
3. Mycobacterial persistence: adaptation to a changing environment. Honer zu Bentrup K, Russel DG, TRENDS in Microbiology 2001
4. Oxygen depletion induced dormancy in Mycobacterium smegmatis. Dick T, Lee BH, Murugasu-oei B, FEMS Microbiol Letters 1998 162 159 164 (Pubitemid 28289353)
5. Plate-based dormancy culture system for Mycobacterium smegmatis and isolation of metronidazole-resistant mutants. Lim A, Dick T, FEMS Microbiol Letters 2001 200 215 219 10.1111/j.1574-6968.2001.tb10718.x (Pubitemid 32566365)
6. An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of non replicating persistence. Wayne LG, Hayes LG, Infect Immun 1996 64 2062 2069 8675308 (Pubitemid 26165667)
7. Studies on the effect of starvation on mycobacteria. Nyka W, Infect Immun 1974 9 843 850 4132910
8. The influence of foodstuffs upon the respiratory metabolism and growth of human tubercle bacilli. Loebel RO, Shorr E, Richardson HB, J Bacteriol 1933 26 139 166 16559649
9. The influence of adverse conditions upon the respiratory metabolism and growth of human tubercle bacilli. Loebel RO, Shorr E, Richardson HB, J Bacteriol 1933 26 167 200 16559650
10. Oxygen depletion induced dormancy in Mycobacterium Bovis BCG. Lim A, Eleuterio M, Hutter B, Murugasu-Oei B, Dick T, J Bacteriol 1999 181 2252 2256 10094705 (Pubitemid 29164981)
11. Hypoxia: a window into Mycobacterium tuberculosis latency. Rustad TR, Sherrid AM, Minch KJ, Sherman DR, Cell Microbiol 2009 11 1151 1159 10.1111/j.1462-5822.2009.01325.x 19388905
12. Adaptation of Mycobacterium smegmatis to stationary phase. Smeulders MJ, Keer J, Speight RA, Williams HD, J Bacteriol 1999 181 270 283 9864340 (Pubitemid 29013681)
13. Gap, a mycobacterial specific integral membrane protein, is required for glycolipid transport to the cell surface. Sonden B, Kocincova D, Deshayes C, Euphrasie D, Rayat L, Laval F, Frahel C, Daffè M, Etienne G, Reyrat JM, Mol Microbiol 2005 58 426 440 10.1111/j.1365-2958.2005.04847.x 16194230 (Pubitemid 41476159)
14. "Close-fitting sleeves": DNA damage recognition by the UvrABC nuclease system. Van Houten B, Croteau DL, DellaVecchia MJ, Wang H, Kisker C, Mutat Res 2005 577 92 117 10.1016/j.mrfmmm.2005.03.013 15927210 (Pubitemid 41225491)
15. Base exision and nucleotide exision repair pathways in mycobacteria. Kurthkoti K, Varshney U
16. Role for nucleotide excision repair in virulence of Mycobacterium tuberculosis. Darwin KH, Nathan CF, Infect Immun 2005 73 4581 458 10.1128/IAI.73.8.4581-4587.2005 16040969 (Pubitemid 41105612)
17. Role for nucleotide excision repair in virulence of Mycobacterium tuberculosis. Darwin KH, Nathan CF, Infect Immun 2005 73 4581 458 10.1128/IAI.73.8.4581-4587.2005 16040969 (Pubitemid 41105612)
18. Important role of the nucleotide excision repair pathway in Mycobacterium smegmatis in conferring protection against commonly encountered DNA-damaging agents. Kurthkoti K, Kumar P, Jain R, Varshney U, Microbiology 2008 154 2776 2785 10.1099/mic.0.2008/019638-0 18757811
19. Characterisation of the mycobacterial NER system reveals novel functions of uvrD1 helicase. Guthlein C, Wanner RM, Sander P, Davis EO, Bosshard M, Jiricny J, Bottger EC, Springer B, J Bacteriol 2009 191 555 562 10.1128/JB.00216-08 19011038
20. Polyphosphate kinase is involved in stress-induced mprAB-sigE-rel signalling in mycobacteria. Sureka K, Dey S, Singh AK, Dasgupta A, Rodrigue S, Basu J, Kundu M, Mol Microbiol 2007 65 261 276 10.1111/j.1365-2958.2007.05814.x 17630969 (Pubitemid 47052738)
21. Rapid discrimination of Mycobacterium tuberculosis complex strains by ligation-mediated PCR fingerprint analysis. Prod'hom G, Guilhot C, Gutierrez MC, Varnerot A, Gicquel B, Vincen V, J Clin Microbiol 1997 35 3331 3334 9399550 (Pubitemid 27505775)
22. Attenuation of virulence by disruption of Mycobacterium tuberculosis erp gene. Berthet FX, Lagranderie M, Gounon P, Laurent-Winter C, Ensergueix D, Chavarot P, Thouron F, Maranghi E, Pelicic V, Portno D, Marchal G, Gicquel B, Science 1998 282 759 762 9784137 (Pubitemid 28489391)
23. Comparison of the roles of reactive oxygen and nitrogen intermediates in the host response to Mycobacterium tuberculosis using transgenic mice. Adams LB, Dinauer MC, Morgenstern DE, Krahenbuhl JL, Tubercle Lung Dis 1997 78 237 246 10.1016/S0962-8479(97)90004-6 (Pubitemid 28389093)
24. Comparative roles of free fatty acids with reactive nitrogenintermediates and reactive oxygen intermediates in expression of the anti-microbial activity of macrophages against Mycobacterium tuberculosis. Akaki T, Tomioka H, Shimizu T, Dekio S, Sato K, Clin Exp Immunol 2000 121 302 310 10.1046/j.1365-2249.2000. 01298.x 10931146 (Pubitemid 30659769)
25. Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens. Nathan C, Shiloh MU, P Natl Acad Sci USA 2000 97 8841 8848 10.1073/pnas.97.16.8841 (Pubitemid 30626635)
26. The role of the phagocytic respiratory burst in host defense against Mycobacterium tuberculosis. Lau YL, Chan GC, Ha SY, Hui YF, Yuen KY, Clin Infect Dis 1998 26 226 227 10.1086/517036 9455564 (Pubitemid 28068209)
27. Increased exhaled nitric oxide in active pulmonary tuberculosis due to inducible NO synthase upregulation in alveolar macrophages. Wang CH, Liu CY, Lin HC, Yu CT, Chung KF, Kuo HP, Eur Respir J 1998 11 809 815 10.1183/09031936.98. 11040809 9623681 (Pubitemid 28231271)
28. DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence? Mizrahi V, Andersen SJ, Mol Microbiol 1998 29 1331 1339 10.1046/j.1365-2958.1998.01038.x 9781872 (Pubitemid 28435287)
29. Lack of mismatch correction facilitates genome evolution in mycobacteria. Springer B, Sander P, Sedlacek L, Hardt WD, Mizrahi V, Schär P, Böttger EC, Mol Microbiol 2004 53 1601 1609 10.1111/j.1365-2958.2004.04231. x 15341642 (Pubitemid 39265309)
30. Deoxyribonucleic acid replication time in Mycobacterium tuberculosis H37 Rv. Hiriyanna KT, Ramakrishnan T, Arch Microbiol 1986 144 105 109 10.1007/BF00414718 3087325 (Pubitemid 16131215)
31. DNA repair in Mycobacterium tuberculosis revisited. Dos Vultos T, Mestre O, Tonjum T, Gicquel B, FEMS 2009
32. Repair of oxidative damage to DNA: enzymology and biology. Demple B, Harrison L, Annu Rev Biochem 1994 63 915 948 10.1146/annurev.bi.63.070194.004411 7979257 (Pubitemid 24218652)
33. Mechanisms of formation, genotoxicity, and mutation of guanine oxidation products. Neeley WL, Essigmann JM, Chem Res Toxicol 2006 19 491 505 10.1021/tx0600043 16608160
34. Base-excision repair of oxidative DNA damage. David SS, O'Shea VL, Kundu S, Nature 2007 447 941 950 10.1038/nature05978 17581577 (Pubitemid 46975761)
35. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Snapper SB, Melton RE, Mustafa S, Kieser T, Jacobs WR Jr, Mol Microbiol 1990 4 1911 1919 10.1111/j.1365-2958.1990.tb02040.x 2082148
36. Sambrook J, Fitsch EF, Maniatis T, Molecular Cloning: A Laboratory Manual Cold Spring Harbor, Cold Spring Harbor Press 1989
37. Generation of unmarked directed mutations in mycobacteria, using sucrose counter-selectable suicide vectors. Pelicic V, Reyrat JM, Gicquel B, Mol Microbiol 1996 20 919 925 10.1111/j.1365-2958.1996.tb02533.x 8809745 (Pubitemid 26198265)
38. Erp, an extracellular protein family specific to mycobacteria. de Mendonca-Lima L, Picardeau M, Raynaud C, Rauzier J, de la salmoniere YO, Barker L, Bigi F, Cataldi A, Gicquel B, Reyrat JM, Microbiology 2001 147 2315 2320 11496008 (Pubitemid 32785511)
39. Modification of the mycobacteriophage Ms6 attP core allows the integration of multiple vectors into different tRNAala T-loops in slow- and fast-growing mycobacteria. Vultos TD, Mederle I, Abadie V, Pimentel M, Moniz-Pereira J, Gicquel B, Reyrat JM, Winter N, BMC Mol Biol 2006 7 47 10.1186/1471-2199-7-47 17173678 (Pubitemid 46178871)