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Volumn 100, Issue 3, 2011, Pages 333-339

Amycolatopsis endophytica sp. nov., a novel endophytic actinomycete isolated from oil-seed plant Jatropha curcas L.

Author keywords

16S rRNA; Amycolatopsis endophytica sp. nov.; Polyphasic taxonomy

Indexed keywords

RNA 16S;

EID: 80054109359     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9588-8     Document Type: Article
Times cited : (24)

References (41)
  • 1
    • 76549098527 scopus 로고    scopus 로고
    • Amycolatopsis tucumanensis sp. nov., a copper-resistant actinobacterium isolated from polluted sediments
    • 19651731 10.1099/ijs.0.010587-0
    • VH Albarracín P Alonso-Vega ME Trujillo MJ Amoroso CM Abate 2010 Amycolatopsis tucumanensis sp. nov., a copper-resistant actinobacterium isolated from polluted sediments Int J Syst Evol Microbiol 60 397 401 19651731 10.1099/ijs.0.010587-0
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 397-401
    • Albarracín, V.H.1    Alonso-Vega, P.2    Trujillo, M.E.3    Amoroso, M.J.4    Abate, C.M.5
  • 5
    • 0019306204 scopus 로고
    • Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid
    • MD Collins D Jones 1980 Lipids in the classification and identification of coryneform bacteria containing peptidoglycan based on 2,4-diaminobutyric acid J Appl Bacteriol 48 459 470 1:CAS:528:DyaL3cXltFShtbY%3D (Pubitemid 10014746)
    • (1980) Journal of Applied Bacteriology , vol.48 , Issue.3 , pp. 459-470
    • Collins, M.D.1    Jones, D.2
  • 7
    • 79955421668 scopus 로고    scopus 로고
    • Amycolatopsis samaneae sp. nov., isolated from roots of Samanea saman (Jacq.) Merr
    • 20511469 10.1099/ijs.0.022699-0 1:CAS:528:DC%2BC3MXms1Wgtbw%3D
    • K Duangmal R Mingma W Pathom-Aree A Thamchaipenet Y Inahashi A Matsumoto Y Takahashi 2011 Amycolatopsis samaneae sp. nov., isolated from roots of Samanea saman (Jacq.) Merr Int J Syst Evol Microbiol 61 951 955 20511469 10.1099/ijs.0.022699-0 1:CAS:528:DC%2BC3MXms1Wgtbw%3D
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 951-955
    • Duangmal, K.1    Mingma, R.2    Pathom-Aree, W.3    Thamchaipenet, A.4    Inahashi, Y.5    Matsumoto, A.6    Takahashi, Y.7
  • 8
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • 10.1099/00207713-39-3-224
    • T Ezaki Y Hashimoto E Yabuuchi 1989 Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains Int J Syst Bacteriol 39 224 229 10.1099/00207713-39-3-224
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 9
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • 10.2307/2408678
    • J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 789 10.2307/2408678
    • (1985) Evolution , vol.39 , pp. 783-789
    • Felsenstein, J.1
  • 10
    • 0015949126 scopus 로고
    • Nocardia coeliaca, Nocardia autotrophica, and the nocardin strains
    • 10.1099/00207713-24-1-54
    • RE Gordon DA Barnett JE Handerhan CH-N Pang 1974 Nocardia coeliaca, Nocardia autotrophica, and the nocardin strains Int J Syst Bacteriol 24 54 63 10.1099/00207713-24-1-54
    • (1974) Int J Syst Bacteriol , vol.24 , pp. 54-63
    • Gordon, R.E.1    Barnett, D.A.2    Handerhan, J.E.3    Ch-N, P.4
  • 13
    • 0021077093 scopus 로고
    • A rapid analysis for chemical grouping of aerobic actinomycetes
    • T Hasegawa M Takizawa S Tanida 1983 A rapid analysis for chemical grouping of aerobic actinomycetes J Gen Microbiol 29 319 322 10.2323/jgam.29.319 1:CAS:528:DyaL3sXmtV2isrw%3D (Pubitemid 14176930)
    • (1983) Journal of General and Applied Microbiology , vol.29 , Issue.4 , pp. 319-322
    • Hasegawa, T.1    Takizawa, M.2    Tanida, S.3
  • 15
    • 1842579707 scopus 로고    scopus 로고
    • Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source
    • DOI 10.1099/ijs.0.02685-0
    • Y Huang M Pasciak ZH Liu Q Xie A Gamian 2004 Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source Int J Syst Evol Microbiol 54 359 363 15023943 10.1099/ijs.0.02685-0 1:CAS:528:DC%2BD2cXjtl2hsL0%3D (Pubitemid 38443726)
    • (2004) International Journal of Systematic and Evolutionary Microbiology , vol.54 , Issue.2 , pp. 359-363
    • Huang, Y.1    Pasciak, M.2    Liu, Z.3    Xie, Q.4    Gamian, A.5
  • 16
    • 0029799185 scopus 로고    scopus 로고
    • Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa
    • P Kämpfer RM Kroppenstedt 1996 Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa Can J Microbiol 42 989 1005 10.1139/m96-128 (Pubitemid 26380214)
    • (1996) Canadian Journal of Microbiology , vol.42 , Issue.10 , pp. 989-1005
    • Kampfer, P.1    Kroppenstedt, R.M.2
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence J Mol Evol 16 111 120 7463489 10.1007/BF01731581 1:CAS:528:DyaL3MXmtFSktg%3D%3D (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 20
    • 84963036271 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • 10.2307/2412407
    • AG Kluge FS Farris 1969 Quantitative phyletics and the evolution of anurans Syst Zool 18 1 32 10.2307/2412407
    • (1969) Syst Zool , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, F.S.2
  • 21
    • 0015844055 scopus 로고
    • Numerical taxonomy of Nocardia
    • 4800544 10.1139/m73-164 1:STN:280:DyaE2c%2FivFGhug%3D%3D
    • PV Kurup JA Schmitt 1973 Numerical taxonomy of Nocardia Can J Microbiol 19 1035 1048 4800544 10.1139/m73-164 1:STN:280:DyaE2c%2FivFGhug%3D%3D
    • (1973) Can J Microbiol , vol.19 , pp. 1035-1048
    • Kurup, P.V.1    Schmitt, J.A.2
  • 22
    • 0141502455 scopus 로고    scopus 로고
    • Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas
    • DOI 10.1099/ijs.0.02691-0
    • DP Labeda JM Donahue NM Williams SF Sells MM Henton 2003 Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas Int J Syst Evol Microbiol 53 1601 1605 13130055 10.1099/ijs.0.02691-0 1:CAS:528:DC%2BD3sXotlylurk%3D (Pubitemid 37184997)
    • (2003) International Journal of Systematic and Evolutionary Microbiology , vol.53 , Issue.5 , pp. 1601-1605
    • Labeda, D.P.1    Donahue, J.M.2    Williams, N.M.3    Sells, S.F.4    Henton, M.M.5
  • 23
    • 0002044672 scopus 로고
    • Chemical composition as a criterion in the classification of aerobic actinomycetes
    • 10.1099/00207713-20-4-435 1:CAS:528:DyaE3sXltFaqur0%3D
    • MP Lechevalier HA Lechevalier 1970 Chemical composition as a criterion in the classification of aerobic actinomycetes Int J Syst Bacteriol 20 435 443 10.1099/00207713-20-4-435 1:CAS:528:DyaE3sXltFaqur0%3D
    • (1970) Int J Syst Bacteriol , vol.20 , pp. 435-443
    • Lechevalier, M.P.1    Lechevalier, H.A.2
  • 25
    • 67651120125 scopus 로고    scopus 로고
    • Amycolatopsis ultiminotia sp. nov., isolated from rhizosphere soil, and emended description of the genus Amycolatopsis
    • 19502324 10.1099/ijs.0.006577-0 1:CAS:528:DC%2BD1MXos1Ciur8%3D
    • SD Lee 2009 Amycolatopsis ultiminotia sp. nov., isolated from rhizosphere soil, and emended description of the genus Amycolatopsis Int J Syst Evol Microbiol 59 1401 1404 19502324 10.1099/ijs.0.006577-0 1:CAS:528: DC%2BD1MXos1Ciur8%3D
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1401-1404
    • Lee, S.D.1
  • 27
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • 10.1099/00207713-39-2-159 1:CAS:528:DyaL1MXltFWku7o%3D
    • M Mesbah U Premachandran WB Whitman 1989 Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography Int J Syst Bacteriol 39 159 167 10.1099/00207713-39-2-159 1:CAS:528: DyaL1MXltFWku7o%3D
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 28
    • 0018393563 scopus 로고
    • Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa
    • DE Minnikin MD Collins M Goodfellow 1979 Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa J Appl Bacteriol 47 87 95 1:CAS:528:DyaE1MXlsFCiu7w%3D (Pubitemid 9239553)
    • (1979) Journal of Applied Bacteriology , vol.47 , Issue.1 , pp. 87-95
    • Minnikin, D.E.1    Collins, M.D.2    Goodfellow, M.3
  • 29
    • 0018834020 scopus 로고
    • Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria
    • DE Minnikin IG Hutchinson AB Caldicott M Goodfellow 1980 Thin layer chromatography of methanolysates of mycolic acid-containing bacteria J Chromatogr A 188 221 233 10.1016/S0021-9673(00)88433-2 1:CAS:528: DyaL3cXhtVKksrg%3D (Pubitemid 10138437)
    • (1980) Journal of Chromatography , vol.188 , Issue.1 , pp. 221-233
    • Minnikin, D.E.1    Hutchinson, I.G.2    Caldicott, A.B.3    Goodfellow, M.4
  • 30
    • 53149115896 scopus 로고    scopus 로고
    • Glycomyces endophyticus sp. nov., an endophytic actinomycete isolated from the root of Carex baccans Nees
    • 18984687 10.1099/ijs.0.2008/000398-0 1:CAS:528:DC%2BD1MXjvVOhtw%3D%3D
    • S Qin HB Wang HH Chen YQ Zhang CL Jiang LH Xu WJ Li 2008 Glycomyces endophyticus sp. nov., an endophytic actinomycete isolated from the root of Carex baccans Nees Int J Syst Evol Microbiol 58 2525 2528 18984687 10.1099/ijs.0.2008/000398-0 1:CAS:528:DC%2BD1MXjvVOhtw%3D%3D
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2525-2528
    • Qin, S.1    Wang, H.B.2    Chen, H.H.3    Zhang, Y.Q.4    Jiang, C.L.5    Xu, L.H.6    Li, W.J.7
  • 31
    • 70349429746 scopus 로고    scopus 로고
    • Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China
    • 19648362 10.1128/AEM.01034-09 1:CAS:528:DC%2BD1MXhtlWrtbzO
    • S Qin J Li HH Chen GZ Zhao WY Zhu CL Jiang LH Xu WJ Li 2009 Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China Appl Environ Microbiol 75 6176 6186 19648362 10.1128/AEM.01034-09 1:CAS:528:DC%2BD1MXhtlWrtbzO
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6176-6186
    • Qin, S.1    Li, J.2    Chen, H.H.3    Zhao, G.Z.4    Zhu, W.Y.5    Jiang, C.L.6    Xu, L.H.7    Li, W.J.8
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic tree
    • 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic tree Mol Biol Evol 4 406 425 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 0001023407 scopus 로고
    • Methods for characterization of Streptomyces species
    • 10.1099/00207713-16-3-313
    • EB Shirling D Gottlieb 1966 Methods for characterization of Streptomyces species Int J Syst Bacteriol 16 313 340 10.1099/00207713-16-3-313
    • (1966) Int J Syst Bacteriol , vol.16 , pp. 313-340
    • Shirling, E.B.1    Gottlieb, D.2
  • 35
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • E Stackebrandt BM Goebel 1994 Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology Int J Syst Bacteriol 44 846 849 10.1099/00207713-44-4-846 1:CAS:528:DyaK2MXitFCnsb4%3D (Pubitemid 24315169)
    • (1994) International Journal of Systematic Bacteriology , vol.44 , Issue.4 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 36
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 17488738 10.1093/molbev/msm092 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 78649237040 scopus 로고    scopus 로고
    • Amycolatopsis helveola sp. nov. and Amycolatopsis pigmentata sp. nov., isolated from soil
    • 20023060 10.1099/ijs.0.017871-0 1:CAS:528:DC%2BC3cXhs1Wlt7zN
    • T Tamura Y Ishida M Otoguro K Suzuki 2010 Amycolatopsis helveola sp. nov. and Amycolatopsis pigmentata sp. nov., isolated from soil Int J Syst Evol Microbiol 60 2629 2633 20023060 10.1099/ijs.0.017871-0 1:CAS:528: DC%2BC3cXhs1Wlt7zN
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2629-2633
    • Tamura, T.1    Ishida, Y.2    Otoguro, M.3    Suzuki, K.4
  • 38
    • 77952740286 scopus 로고    scopus 로고
    • Amycolatopsis halophila sp. nov., a halophilic actinomycete isolated from a salt lake
    • 19666809 10.1099/ijs.0.012427-0 1:CAS:528:DC%2BC3cXnsVentbY%3D
    • SK Tang Y Wang TW Guan JC Lee CJ Kim WJ Li 2010 Amycolatopsis halophila sp. nov., a halophilic actinomycete isolated from a salt lake Int J Syst Evol Microbiol 60 1073 1078 19666809 10.1099/ijs.0.012427-0 1:CAS:528: DC%2BC3cXnsVentbY%3D
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1073-1078
    • Tang, S.K.1    Wang, Y.2    Guan, T.W.3    Lee, J.C.4    Kim, C.J.5    Li, W.J.6
  • 39
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 9396791 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.