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Volumn 15, Issue 6, 2011, Pages 653-663

Diversity and phylogeny of the ectoine biosynthesis genes in aerobic, moderately halophilic methylotrophic bacteria

Author keywords

Compatible solutes; Ectoine biosynthesis genes; Methanotrophs; Methylotrophic bacteria

Indexed keywords

DIAMINO ACID; ECTOINE; PRIMER DNA; SODIUM CHLORIDE;

EID: 80054102014     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-011-0396-x     Document Type: Article
Times cited : (44)

References (50)
  • 2
    • 33947503703 scopus 로고    scopus 로고
    • Measurement of the content of the osmoprotectant ectoine in methylotrophic bacteria by means of normal-phase high performance liquid chromatography
    • (Moscow, English translation)
    • Eshinimaev BT, Tsyrenzhapova IS, Khmelenina VN, Trotsenko YA (2007) Measurement of the content of the osmoprotectant ectoine in methylotrophic bacteria by means of normal-phase high performance liquid chromatography. Appl Biochem Microbiol 43: 193-196 (Moscow, English translation).
    • (2007) Appl Biochem Microbiol , vol.43 , pp. 193-196
    • Eshinimaev, B.T.1    Tsyrenzhapova, I.S.2    Khmelenina, V.N.3    Trotsenko, Y.A.4
  • 3
    • 5644299641 scopus 로고    scopus 로고
    • Ectoine added protection and care for the skin
    • Buenger J (1999) Ectoine added protection and care for the skin. Eurocosmetics 7: 22-24.
    • (1999) Eurocosmetics , vol.7 , pp. 22-24
    • Buenger, J.1
  • 4
    • 0345647089 scopus 로고    scopus 로고
    • Synthesis of glycine betaine from exogenous choline in the moderately halophilic bacterium Halomonas elongata
    • Cánovas D, Vargas C, Csonka LN, Ventosa A, Nieto JJ (1998) Synthesis of glycine betaine from exogenous choline in the moderately halophilic bacterium Halomonas elongata. Appl Environ Microbiol 64: 4095-4097.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4095-4097
    • Cánovas, D.1    Vargas, C.2    Csonka, L.N.3    Ventosa, A.4    Nieto, J.J.5
  • 5
    • 0009336428 scopus 로고    scopus 로고
    • Organic osmoprotectors of aerobic halophilic methylobacteria
    • (English translation)
    • Doronina NV, Sakharovsky VG, Drachuk SV, Trotsenko YA (1998) Organic osmoprotectors of aerobic halophilic methylobacteria. Mikrobiologiya 67: 457-462 (English translation).
    • (1998) Mikrobiologiya , vol.67 , pp. 457-462
    • Doronina, N.V.1    Sakharovsky, V.G.2    Drachuk, S.V.3    Trotsenko, Y.A.4
  • 6
    • 0033799009 scopus 로고    scopus 로고
    • Methylarcula marina gen nov., sp. nov. and Methylarcula terricola sp. nov.: novel aerobic, moderately halophilic, facultatively methylotrophic bacteria from coastal saline environments
    • Doronina NV, Trotsenko YA, Tourova TP (2000) Methylarcula marina gen nov., sp. nov. and Methylarcula terricola sp. nov.: novel aerobic, moderately halophilic, facultatively methylotrophic bacteria from coastal saline environments. Int J Syst Evol Microbiol 50: 1849-1859.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1849-1859
    • Doronina, N.V.1    Trotsenko, Y.A.2    Tourova, T.P.3
  • 7
    • 0037217220 scopus 로고    scopus 로고
    • Methylophaga alcalica sp. nov., a novel alkaliphilic and moderately halophilic, obligately methylotrophic bacterium from the East Mongolian saline soda lake
    • Doronina NV, TsD Darmaeva, Trotsenko YA (2003a) Methylophaga alcalica sp. nov., a novel alkaliphilic and moderately halophilic, obligately methylotrophic bacterium from the East Mongolian saline soda lake. Int J Syst Evol Microbiol 53: 223-229.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 223-229
    • Doronina, N.V.1    Tsd, D.2    Trotsenko, Y.A.3
  • 8
    • 0141482270 scopus 로고    scopus 로고
    • Methylophaga natronica sp. nov., a new alkaliphilic and moderately halophilic, restricted-facultative methylotrophic bacterium from soda lake of the Southern Transbaikal region
    • Doronina NV, TsD Darmaeva, Trotsenko YA (2003b) Methylophaga natronica sp. nov., a new alkaliphilic and moderately halophilic, restricted-facultative methylotrophic bacterium from soda lake of the Southern Transbaikal region. Syst Appl Microbiol 26: 382-389.
    • (2003) Syst Appl Microbiol , vol.26 , pp. 382-389
    • Doronina, N.V.1    Tsd, D.2    Trotsenko, Y.A.3
  • 9
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 0028783450 scopus 로고
    • Osmoadaptation in bacteria
    • Galinski EA (1995) Osmoadaptation in bacteria. Adv Microbial Physiol 37: 273-328.
    • (1995) Adv Microbial Physiol , vol.37 , pp. 273-328
    • Galinski, E.A.1
  • 11
    • 0021799461 scopus 로고
    • 1,4,5,6,-Tetrahydro-2-methyl-4-pyrimidinecarboxylic acid, a novel cyclic acid from halophilic phototrophic bacteria of genus Ectothiorhodospira
    • Galinski EA, Pfeiffer HP, Trüper HG (1985) 1, 4, 5, 6,-Tetrahydro-2-methyl-4-pyrimidinecarboxylic acid, a novel cyclic acid from halophilic phototrophic bacteria of genus Ectothiorhodospira. Eur J Biochem 149: 135-139.
    • (1985) Eur J Biochem , vol.149 , pp. 135-139
    • Galinski, E.A.1    Pfeiffer, H.P.2    Trüper, H.G.3
  • 12
    • 0039801358 scopus 로고    scopus 로고
    • Protection of the model enzyme (lactate dehydrogenase) against heat, urea and freeze-thaw treatment by compatible solute addition
    • Göller K, Galinski EA (1999) Protection of the model enzyme (lactate dehydrogenase) against heat, urea and freeze-thaw treatment by compatible solute addition. J Mol Biol B Enzym 7: 37-45.
    • (1999) J Mol Biol B Enzym , vol.7 , pp. 37-45
    • Göller, K.1    Galinski, E.A.2
  • 14
    • 4344573472 scopus 로고    scopus 로고
    • Life at low water activity
    • Grant WD (2004) Life at low water activity. Phil Trans R Soc Lond B 359: 1249-1267.
    • (2004) Phil Trans R Soc Lond B , vol.359 , pp. 1249-1267
    • Grant, W.D.1
  • 16
    • 0000151665 scopus 로고
    • Osmotic adaptation in halophilic and halotolerant microorganisms
    • R. H. Vreeland and L. J. Hochstein (Eds.), Boca Raton: The CRC Press
    • Imhoff JF (1993) Osmotic adaptation in halophilic and halotolerant microorganisms. In: Vreeland RH, Hochstein LJ (eds) The biology of halophilic bacteria. The CRC Press, Boca Raton, pp 211-253.
    • (1993) The Biology of Halophilic Bacteria , pp. 211-253
    • Imhoff, J.F.1
  • 17
    • 0035342629 scopus 로고    scopus 로고
    • Towards the molecular mechanism of Na/solute symport in prokaryotes
    • Jung H (2001) Towards the molecular mechanism of Na/solute symport in prokaryotes. Biochim Biophys Acta 1505: 131-143.
    • (2001) Biochim Biophys Acta , vol.1505 , pp. 131-143
    • Jung, H.1
  • 18
    • 0033379899 scopus 로고    scopus 로고
    • Methylomonas scandinavica sp. nov., a new methanotrophic psychrotrophic bacterium isolated from deep igneous rock ground water of Sweden
    • Kalyuzhnaya MG, Khmelenina VN, Kotelnikova S, Holmquist L, Pedersen K, Trotsenko YA (1999) Methylomonas scandinavica sp. nov., a new methanotrophic psychrotrophic bacterium isolated from deep igneous rock ground water of Sweden. Syst Appl Microbiol 22: 565-572.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 565-572
    • Kalyuzhnaya, M.G.1    Khmelenina, V.N.2    Kotelnikova, S.3    Holmquist, L.4    Pedersen, K.5    Trotsenko, Y.A.6
  • 19
    • 44449131579 scopus 로고    scopus 로고
    • Reclassification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium
    • Kalyuzhnaya MG, Khmelenina VN, Eshinimaev BT, Sorokin D, Fuse H, Lidstrom M, Trotsenko Y (2008) Reclassification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium. Int J Syst Evol Microbiol 58: 591-596.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 591-596
    • Kalyuzhnaya, M.G.1    Khmelenina, V.N.2    Eshinimaev, B.T.3    Sorokin, D.4    Fuse, H.5    Lidstrom, M.6    Trotsenko, Y.7
  • 20
    • 0031719418 scopus 로고    scopus 로고
    • Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
    • Kempf B, Bremer E (1998) Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments. Arch Microbiol 170: 319-330.
    • (1998) Arch Microbiol , vol.170 , pp. 319-330
    • Kempf, B.1    Bremer, E.2
  • 23
    • 0033180252 scopus 로고    scopus 로고
    • Thermal stabilization of bovine ribonuclease A by naturally occurring osmolyte beta-hydroxyectoine and betaine
    • Knap S, Ladenstain R, Galinski EA (1999) Thermal stabilization of bovine ribonuclease A by naturally occurring osmolyte beta-hydroxyectoine and betaine. Extremophiles 3: 191-198.
    • (1999) Extremophiles , vol.3 , pp. 191-198
    • Knap, S.1    Ladenstain, R.2    Galinski, E.A.3
  • 24
    • 0242269850 scopus 로고    scopus 로고
    • Molecular phylogeny of the Drosophila melanogaster species subgroup
    • Ko W-Y, Ryan MD, Akashi H (2003) Molecular phylogeny of the Drosophila melanogaster species subgroup. J Mol Evol 57: 562-573.
    • (2003) J Mol Evol , vol.57 , pp. 562-573
    • Ko, W.-Y.1    Ryan, M.D.2    Akashi, H.3
  • 25
    • 0036151758 scopus 로고    scopus 로고
    • Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp
    • Kuhlmann AU, Bremer E (2002) Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp. Appl Environ Microbiol 68: 772-783.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 772-783
    • Kuhlmann, A.U.1    Bremer, E.2
  • 26
    • 50949113703 scopus 로고    scopus 로고
    • Aerobic methylotrophic prokaryotes
    • 3rd edn., A. Balows (Ed.), New York: Springer Verlag
    • Lidstrom ME (2006) Aerobic methylotrophic prokaryotes. In: Balows A et al (eds) The Prokaryotes, 3rd edn. Springer Verlag, New York, pp 618-634.
    • (2006) The Prokaryotes , pp. 618-634
    • Lidstrom, M.E.1
  • 27
    • 0026598013 scopus 로고
    • Enzyme stabilization by ectoine-type compatible solutes: protection against heating, freezing, and drying
    • Lippert K, Galinski EA (1992) Enzyme stabilization by ectoine-type compatible solutes: protection against heating, freezing, and drying. Appl Microbial Biotechnol 37: 61-65.
    • (1992) Appl Microbial Biotechnol , vol.37 , pp. 61-65
    • Lippert, K.1    Galinski, E.A.2
  • 28
    • 71449098882 scopus 로고    scopus 로고
    • Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways
    • Lo C-C, Bonner AC, Xie G, D'Souza M, Jensen AR (2009) Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways. Microbiol Molec Biol Rev 73: 594-651.
    • (2009) Microbiol Molec Biol Rev , vol.73 , pp. 594-651
    • Lo, C.-C.1    Bonner, A.C.2    Xie, G.3    D'Souza, M.4    Jensen, A.R.5
  • 29
    • 0030922377 scopus 로고    scopus 로고
    • Characterization of genes for the biosynthesis of the compatible solute ectoine from Marinococcus halophilus and osmoregulated expression in Escherichia coli
    • Louis P, Galinski EA (1997) Characterization of genes for the biosynthesis of the compatible solute ectoine from Marinococcus halophilus and osmoregulated expression in Escherichia coli. Microbiology 143: 1141-1149.
    • (1997) Microbiology , vol.143 , pp. 1141-1149
    • Louis, P.1    Galinski, E.A.2
  • 30
    • 72249093779 scopus 로고    scopus 로고
    • EctR-a novel transcriptional regulator of ectoine biosynthesis genes in the haloalcaliphilic methylotrophic bacterium Methylophaga alcalica
    • (Moscow, English translation)
    • Mustakhimov II, Reshetnikov AS, Khmelenina VN, YuA Trotsenko (2009) EctR-a novel transcriptional regulator of ectoine biosynthesis genes in the haloalcaliphilic methylotrophic bacterium Methylophaga alcalica. Doklady Biochem Biophys 429: 305-308 (Moscow, English translation).
    • (2009) Doklady Biochem Biophys , vol.429 , pp. 305-308
    • Mustakhimov, I.I.1    Reshetnikov, A.S.2    Khmelenina, V.N.3    Yua, T.4
  • 31
    • 73649123517 scopus 로고    scopus 로고
    • Identification and characterization of EctR1, a new transcriptional regulator of the ectoine biosynthesis genes in the halotolerant methanotroph Methylomicrobium alcaliphilum 20Z
    • Mustakhimov II, Reshetnikov AS, Glukhov AS, Khmelenina VN, Kalyuzhnaya MG, Trotsenko YA (2010) Identification and characterization of EctR1, a new transcriptional regulator of the ectoine biosynthesis genes in the halotolerant methanotroph Methylomicrobium alcaliphilum 20Z. J Bacteriol 192: 410-417.
    • (2010) J Bacteriol , vol.192 , pp. 410-417
    • Mustakhimov, I.I.1    Reshetnikov, A.S.2    Glukhov, A.S.3    Khmelenina, V.N.4    Kalyuzhnaya, M.G.5    Trotsenko, Y.A.6
  • 32
    • 0032955581 scopus 로고    scopus 로고
    • Characterization of biosynthetic enzymes for ectoine as a compatible solute in a moderately halophilic eubacterium, Halomonas elongata
    • Ono H, Sawada K, Khunajakr N, Toa T, Yamamoto M, Hiramoto M, Shinmyo A, Takano M, Murooka Y (1999) Characterization of biosynthetic enzymes for ectoine as a compatible solute in a moderately halophilic eubacterium, Halomonas elongata. J Bacteriol 181: 91-99.
    • (1999) J Bacteriol , vol.181 , pp. 91-99
    • Ono, H.1    Sawada, K.2    Khunajakr, N.3    Toa, T.4    Yamamoto, M.5    Hiramoto, M.6    Shinmyo, A.7    Takano, M.8    Murooka, Y.9
  • 34
    • 42949104034 scopus 로고    scopus 로고
    • Microbial life at high salt concentrations: phylogenetic and metabolic diversity
    • Oren A (2008) Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Syst 4: 2.
    • (2008) Saline Syst , vol.4 , pp. 2
    • Oren, A.1
  • 37
    • 26044438898 scopus 로고    scopus 로고
    • Cloning, purification, and characterization of diaminobutyrate acetyltransferase from the halotolerant methanotroph Methylomicrobium alcaliphilum 20Z
    • (Moscow, English translation)
    • Reshetnikov AS, Mustakhimov II, Khmelenina VN, Trotsenko YA (2005) Cloning, purification, and characterization of diaminobutyrate acetyltransferase from the halotolerant methanotroph Methylomicrobium alcaliphilum 20Z. Biochemistry 70: 878-883 (Moscow, English translation).
    • (2005) Biochemistry , vol.70 , pp. 878-883
    • Reshetnikov, A.S.1    Mustakhimov, I.I.2    Khmelenina, V.N.3    Trotsenko, Y.A.4
  • 38
    • 29144439151 scopus 로고    scopus 로고
    • Characterization of the ectoine biosynthesis genes in obligate haloalkalotolerant methanotroph Methylomicrobium alcaliphilum 20Z
    • Reshetnikov AS, Khmelenina VN, Trotsenko YA (2006) Characterization of the ectoine biosynthesis genes in obligate haloalkalotolerant methanotroph Methylomicrobium alcaliphilum 20Z. Arch Microbiol 184: 286-296.
    • (2006) Arch Microbiol , vol.184 , pp. 286-296
    • Reshetnikov, A.S.1    Khmelenina, V.N.2    Trotsenko, Y.A.3
  • 39
    • 33646498780 scopus 로고    scopus 로고
    • Organic compatible solutes of halotolerant and halophilic microorganisms
    • Roberts MF (2005) Organic compatible solutes of halotolerant and halophilic microorganisms. Saline Syst 1: 5.
    • (2005) Saline Syst , vol.1 , pp. 5
    • Roberts, M.F.1
  • 41
    • 44849113111 scopus 로고    scopus 로고
    • Regulation of osmoadaptation in the moderate halophile Halobacillus halophilus: chloride, glutamate and switching osmolyte strategies
    • Saum SH, Müller V (2008) Regulation of osmoadaptation in the moderate halophile Halobacillus halophilus: chloride, glutamate and switching osmolyte strategies. Saline Syst 4: 4.
    • (2008) Saline Syst , vol.4 , pp. 4
    • Saum, S.H.1    Müller, V.2
  • 43
    • 0026699271 scopus 로고
    • The predominant role of recently discovered tetrahydropyrimidines for the osmoadaptation of halophilic eubacteria
    • Severin J, Wohlfarth A, Galinski EA (1992) The predominant role of recently discovered tetrahydropyrimidines for the osmoadaptation of halophilic eubacteria. J Gen Microbiol 138: 1629-1638.
    • (1992) J Gen Microbiol , vol.138 , pp. 1629-1638
    • Severin, J.1    Wohlfarth, A.2    Galinski, E.A.3
  • 44
    • 0034203080 scopus 로고    scopus 로고
    • A novel obligately methylotrophic, methane-oxidizing Methylomicrobium species from a highly alkaline environment
    • Sorokin DY, Jones BE, Kuenen JG (2000) A novel obligately methylotrophic, methane-oxidizing Methylomicrobium species from a highly alkaline environment. Extremophiles 4: 145-155.
    • (2000) Extremophiles , vol.4 , pp. 145-155
    • Sorokin, D.Y.1    Jones, B.E.2    Kuenen, J.G.3
  • 45
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 46
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmaugin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmaugin, F.4    Higgins, D.G.5
  • 47
    • 0036511618 scopus 로고    scopus 로고
    • Biology and osmoadaptation of haloalkaliphilic methanotrophs
    • (English translation)
    • Trotsenko YA, Khmelenina VN (2002) Biology and osmoadaptation of haloalkaliphilic methanotrophs. Mikrobiologiya 71: 123-132 (English translation).
    • (2002) Mikrobiologiya , vol.71 , pp. 123-132
    • Trotsenko, Y.A.1    Khmelenina, V.N.2
  • 48
    • 52949103355 scopus 로고    scopus 로고
    • Unravelling the adaptation responses to osmotic and temperature stress in Chromohalobacter salexigens, a bacterium with broad salinity tolerance
    • doi:10.1186/1746-1448-4-14
    • Vargas C, Argandona M, Reina-Bueno M, Rodriguez-Moya J, Fernandez-Aunion C, Nieto JJ (2008) Unravelling the adaptation responses to osmotic and temperature stress in Chromohalobacter salexigens, a bacterium with broad salinity tolerance. Saline Syst 4: 14. doi: 10. 1186/1746-1448-4-14.
    • (2008) Saline Syst , vol.4 , pp. 14
    • Vargas, C.1    Argandona, M.2    Reina-Bueno, M.3    Rodriguez-Moya, J.4    Fernandez-Aunion, C.5    Nieto, J.J.6
  • 49
    • 0031810562 scopus 로고    scopus 로고
    • Biology of moderately halophilic aerobic bacteria
    • Ventosa A, Nieto JJ, Oren A (1998) Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62: 504-544.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 504-544
    • Ventosa, A.1    Nieto, J.J.2    Oren, A.3
  • 50
    • 0025240751 scopus 로고
    • The spectrum of compatible solutes in heterotrophic halophilic eubacteria of the family Halomonadaceae
    • Wohlfarth A, Severin J, Galinski EA (1990) The spectrum of compatible solutes in heterotrophic halophilic eubacteria of the family Halomonadaceae. J Gen Microbiol 136: 705-712.
    • (1990) J Gen Microbiol , vol.136 , pp. 705-712
    • Wohlfarth, A.1    Severin, J.2    Galinski, E.A.3


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