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Volumn 12, Issue , 2011, Pages

The human genome: A multifractal analysis

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE;

EID: 80054000048     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-506     Document Type: Article
Times cited : (28)

References (48)
  • 3
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • 10.1038/nature03001, 15496913, International human genome sequencing consortium
    • International human genome sequencing consortium Finishing the euchromatic sequence of the human genome. Nature 2004, 431:931-45. 10.1038/nature03001, 15496913, International human genome sequencing consortium.
    • (2004) Nature , vol.431 , pp. 931-945
  • 5
    • 0141854009 scopus 로고    scopus 로고
    • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
    • 10.1101/gr.1649303, 403669, 12915492
    • Versteeg R, van Schaik BDC, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AHC. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Research 2003, 13:1998-2004. 10.1101/gr.1649303, 403669, 12915492.
    • (2003) Genome Research , vol.13 , pp. 1998-2004
    • Versteeg, R.1    van Schaik, B.D.C.2    van Batenburg, M.F.3    Roos, M.4    Monajemi, R.5    Caron, H.6    Bussemaker, H.J.7    van Kampen, A.H.C.8
  • 6
    • 17844372232 scopus 로고    scopus 로고
    • SINEs point to abundant editing in the human genome
    • DeCerbo J, Carmichael GG. SINEs point to abundant editing in the human genome. Genome Biology 2005, 6:216.
    • (2005) Genome Biology , vol.6 , pp. 216
    • DeCerbo, J.1    Carmichael, G.G.2
  • 7
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 10.1038/nature09534, 3042601, 20981092, The 1000 genomes project consortium
    • The 1000 genomes project consortium A map of human genome variation from population-scale sequencing. Nature 2010, 467:1061-1073. 10.1038/nature09534, 3042601, 20981092, The 1000 genomes project consortium.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 12
    • 0000204878 scopus 로고
    • Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
    • 10.1103/PhysRevLett.68.3805, 10045801
    • Voss R. Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys Rev Lett 1992, 68:3805-8. 10.1103/PhysRevLett.68.3805, 10045801.
    • (1992) Phys Rev Lett , vol.68 , pp. 3805-3808
    • Voss, R.1
  • 15
    • 33748455620 scopus 로고
    • Multifractal phenomena in physics and chemistry
    • Stanley HE, Meakin P. Multifractal phenomena in physics and chemistry. Nature 1988, 335:405-409.
    • (1988) Nature , vol.335 , pp. 405-409
    • Stanley, H.E.1    Meakin, P.2
  • 16
    • 24544470940 scopus 로고
    • Simple multifractal cascade model for fully developed turbulence
    • 10.1103/PhysRevLett.59.1424, 10035231
    • Meneveau C, Sreenivasan KR. Simple multifractal cascade model for fully developed turbulence. Phys Rev Lett 1987, 59:1424-1427. 10.1103/PhysRevLett.59.1424, 10035231.
    • (1987) Phys Rev Lett , vol.59 , pp. 1424-1427
    • Meneveau, C.1    Sreenivasan, K.R.2
  • 18
    • 0035442627 scopus 로고    scopus 로고
    • Measure representation and multifractal analysis of complete genomes
    • Yu ZG, Anh V, Lau KS. Measure representation and multifractal analysis of complete genomes. Phys Rev E Stat Nonlin Soft Matter Phys 2001, 64:031903.
    • (2001) Phys Rev E Stat Nonlin Soft Matter Phys , vol.64 , pp. 031903
    • Yu, Z.G.1    Anh, V.2    Lau, K.S.3
  • 19
    • 42749106529 scopus 로고    scopus 로고
    • Multifractal and correlation analyses of protein sequences from complete genomes
    • Yu ZG, Anh V, Lau KS. Multifractal and correlation analyses of protein sequences from complete genomes. Phys Rev E Stat Nonlin Soft Matter Phys 2003, 68:021913.
    • (2003) Phys Rev E Stat Nonlin Soft Matter Phys , vol.68 , pp. 021913
    • Yu, Z.G.1    Anh, V.2    Lau, K.S.3
  • 20
    • 9644303060 scopus 로고    scopus 로고
    • A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation
    • 10.1016/j.jtbi.2004.09.002, 15588636
    • Zhou LQ, Yu ZG, Deng JQ, Anh V, Long SC. A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation. J Theor Biol 2005, 232:559-567. 10.1016/j.jtbi.2004.09.002, 15588636.
    • (2005) J Theor Biol , vol.232 , pp. 559-567
    • Zhou, L.Q.1    Yu, Z.G.2    Deng, J.Q.3    Anh, V.4    Long, S.C.5
  • 21
    • 33645166563 scopus 로고    scopus 로고
    • Clustering of protein structures using hydrophobic free energy and solvent accessibility of proteins
    • Yu ZG, Anh V, Lau KS, Zhou LQ. Clustering of protein structures using hydrophobic free energy and solvent accessibility of proteins. Phys Rev E Stat Nonlin Soft Matter Phys 2006, 73(3 Pt 1):031920.
    • (2006) Phys Rev E Stat Nonlin Soft Matter Phys , vol.73 , Issue.3 PART 1 , pp. 031920
    • Yu, Z.G.1    Anh, V.2    Lau, K.S.3    Zhou, L.Q.4
  • 22
    • 42149132666 scopus 로고    scopus 로고
    • Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides
    • 10.1186/1471-2105-9-1, 2265676, 18173834
    • Yang JY, Zhou Y, Yu ZG, Anh V, Zhou LQ. Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides. BMC Bioinformatics 2008, 9:1-13. 10.1186/1471-2105-9-1, 2265676, 18173834.
    • (2008) BMC Bioinformatics , vol.9 , pp. 1-13
    • Yang, J.Y.1    Zhou, Y.2    Yu, Z.G.3    Anh, V.4    Zhou, L.Q.5
  • 23
    • 76749115649 scopus 로고    scopus 로고
    • Hierarchical multifractal representation of symbolic sequences and application to human chromosomes
    • Provata A, Katsaloulis P. Hierarchical multifractal representation of symbolic sequences and application to human chromosomes. Phys Rev E Stat Nonlin Soft Matter Phys 2010, 81:026102.
    • (2010) Phys Rev E Stat Nonlin Soft Matter Phys , vol.81 , pp. 026102
    • Provata, A.1    Katsaloulis, P.2
  • 25
    • 82555184433 scopus 로고    scopus 로고
    • HUGO
    • HUGO. , http://www.hugo.org
  • 26
    • 84859367106 scopus 로고    scopus 로고
    • Genetics home reference
    • Genetics home reference. , http://ghr.nlm.nih.gov/geneFamily
  • 30
    • 2342437120 scopus 로고    scopus 로고
    • Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition
    • 10.1093/bioinformatics/bth005, 14751968
    • Grover D, Mukerji1 M, Bhatnagar P, Kannan K, Brahmachari SK. Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition. Bioinformatics 2004, 20:813-817. 10.1093/bioinformatics/bth005, 14751968.
    • (2004) Bioinformatics , vol.20 , pp. 813-817
    • Grover, D.1    Mukerji1, M.2    Bhatnagar, P.3    Kannan, K.4    Brahmachari, S.K.5
  • 31
    • 31844449262 scopus 로고    scopus 로고
    • Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms
    • 1847407, 16376498
    • Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms. Gene 2006, 365:11-20. 1847407, 16376498.
    • (2006) Gene , vol.365 , pp. 11-20
    • Wang, J.1    Song, L.2    Gonder, M.K.3    Azrak, S.4    Ray, D.A.5    Batzer, M.A.6    Tishkoff, S.A.7    Liang, P.8
  • 33
    • 66349111697 scopus 로고    scopus 로고
    • Highly conserved regions in the 5' region of the human olfactory receptor genes
    • Tobar F, Moreno PA, Vélez PE. Highly conserved regions in the 5' region of the human olfactory receptor genes. Genet and Mol Res 2009, 8:117-128.
    • (2009) Genet and Mol Res , vol.8 , pp. 117-128
    • Tobar, F.1    Moreno, P.A.2    Vélez, P.E.3
  • 38
    • 33751012428 scopus 로고    scopus 로고
    • Alu elements as regulators of gene expression
    • 10.1093/nar/gkl706, 1636486, 17020921
    • Häsler J, Strub K. Alu elements as regulators of gene expression. Nucl Acids Res 2006, 34:5491-5497. 10.1093/nar/gkl706, 1636486, 17020921.
    • (2006) Nucl Acids Res , vol.34 , pp. 5491-5497
    • Häsler, J.1    Strub, K.2
  • 39
    • 77956367274 scopus 로고    scopus 로고
    • Epigenetic histone modifications of human transposable elements: genome defense versus exaptation
    • 2836006, 20226072
    • Huda A, Mariño-Ramírez L, Jordan IK. Epigenetic histone modifications of human transposable elements: genome defense versus exaptation. Mobile DNA 2010, 1:1-12. 2836006, 20226072.
    • (2010) Mobile DNA , vol.1 , pp. 1-12
    • Huda, A.1    Mariño-Ramírez, L.2    Jordan, I.K.3
  • 40
    • 0029870969 scopus 로고    scopus 로고
    • Non-linear dynamics for clinicians: chaos theory, fractals, and complexity at the bedside
    • 10.1016/S0140-6736(96)90948-4, 8622511
    • Goldberger AL. Non-linear dynamics for clinicians: chaos theory, fractals, and complexity at the bedside. Lancet 1996, 347:1312-1314. 10.1016/S0140-6736(96)90948-4, 8622511.
    • (1996) Lancet , vol.347 , pp. 1312-1314
    • Goldberger, A.L.1
  • 41
    • 0029743217 scopus 로고    scopus 로고
    • Zipf-scaling behavior in the immune system
    • 10.1016/0303-2647(96)01618-8, 8894123
    • Burgos JD, Moreno-Tovar P. Zipf-scaling behavior in the immune system. Biosystems 1996, 39:227-232. 10.1016/0303-2647(96)01618-8, 8894123.
    • (1996) Biosystems , vol.39 , pp. 227-232
    • Burgos, J.D.1    Moreno-Tovar, P.2
  • 42
    • 82555202797 scopus 로고    scopus 로고
    • NCBI
    • NCBI. , http://www.ncbi.nlm.nih.gov
  • 43
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • 10.1093/nar/18.8.2163, 330698, 2336393
    • Jeffrey HJ. Chaos game representation of gene structure. Nucl Acids Res 1990, 18:2163-2175. 10.1093/nar/18.8.2163, 330698, 2336393.
    • (1990) Nucl Acids Res , vol.18 , pp. 2163-2175
    • Jeffrey, H.J.1
  • 44
    • 0345256581 scopus 로고    scopus 로고
    • Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
    • 10.1016/j.jtbi.2003.09.009, 14643648
    • Yu ZG, Anh V, Lau KS. Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses. J Theor Biol 2004, 226:341-348. 10.1016/j.jtbi.2003.09.009, 14643648.
    • (2004) J Theor Biol , vol.226 , pp. 341-348
    • Yu, Z.G.1    Anh, V.2    Lau, K.S.3
  • 45
    • 3342916075 scopus 로고
    • Fractal measures and their singularities: The characterization of strange sets
    • 10.1103/PhysRevA.33.1141, 9896729
    • Halsey TC, Jensen MH, Kadanoff LP, Procaccia I, Shraiman BI. Fractal measures and their singularities: The characterization of strange sets. Phys Rev A 1986, 33:1141-1151. 10.1103/PhysRevA.33.1141, 9896729.
    • (1986) Phys Rev A , vol.33 , pp. 1141-1151
    • Halsey, T.C.1    Jensen, M.H.2    Kadanoff, L.P.3    Procaccia, I.4    Shraiman, B.I.5
  • 46
    • 0030310316 scopus 로고    scopus 로고
    • Multifractals, encoded walks and the ergodicity of protein sequences
    • Dewey TG, Strait BJ. Multifractals, encoded walks and the ergodicity of protein sequences. Pac Symp Biocomput 1996, 216.
    • (1996) Pac Symp Biocomput , pp. 216
    • Dewey, T.G.1    Strait, B.J.2
  • 47
    • 82555202800 scopus 로고    scopus 로고
    • PASW Statistic 18. Chicago
    • PASW Statistic 18. Chicago. , http://www.spss.com/statistic/
  • 48
    • 82555163619 scopus 로고    scopus 로고
    • Hierarchical Clustering Explorer version 3.5
    • Hierarchical Clustering Explorer version 3.5. , http://www.cs.umd.edu/hcil/hce/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.