Computational biology in Colombia

PLoS Computational Biology

Volumn 5, Issue 10, 2009, Pages

  Restrepo, Silvia ^a   Pinzón, Andrés ^a   Rodríguez R, Luis Miguel ^a   Sierra, Roberto ^a   Grajales, Alejandro ^a   Bernal, Adriana ^a   Barreto, Emiliano ^b   Moreno, Pedro ^c   Zambrano, Maria Mercedes ^d   Cristancho, Marco ^e   González, Andrés ^a   Castro, Harold ^a  

^a UNIVERSIDAD DE LOS ANDES   (Colombia)

^b UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^c UNIVERSIDAD DEL VALLE   (Colombia)

^d Centro Colombiano en Genómica y Bioinformática en Ambientes Extremos   (Colombia)

^e CENICAFE National Center for Coffee Research   (Colombia)

Author keywords

[No Author keywords available]

Indexed keywords

COLOMBIA; COMPUTATIONAL BIOLOGY;

BETA LACTAMASE; DNA; MICROSATELLITE DNA; PROTEIN;

AGRICULTURE; BACILLUS THURINGIENSIS; BIODIVERSITY; BIOINFORMATICS; BIOLOGY; CASSAVA; CHEMISTRY; COLOMBIA; DNA SEQUENCE; ESCHERICHIA COLI; GENE OVEREXPRESSION; GENETIC VARIABILITY; INTERNET; METABOLOMICS; METAGENOMICS; MICROARRAY ANALYSIS; MOLECULAR BIOLOGY; NONHUMAN; OOMYCETES; PHYSICAL CHEMISTRY; PHYTOPHTHORA INFESTANS; PLANT BREEDING; PLANT DISEASE; POTATO; PSEUDOMONAS AERUGINOSA; REVIEW; XANTHOMONAS AXONOPODIS; EDUCATION;

COLOMBIA; COMPUTATIONAL BIOLOGY;

EID: 73549108498     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000535     Document Type: Review

References (23)

1. MADR (Ministry of Agriculture and Rdural Development) (2009) Estadísticas sector agropecuario. http://www.minagricultura.gov.co/ archivos/estadistica-agropecuarias-11-junio-2009.pdf>.
2. Cristancho MA, Gaitán A, Rivera LF, Orozco CA, Chalarca A (2008) Sistema de información para el manejo de datos moleculares en café: 1. Desarrollo y uso de herramientas. Rev Acad Colomb Cienc 32: 317-324.
3. López G, Cortina H, McCouch S, Moncada M (2009) Analysis of genetic structure in a sample of coffee (Coffea arabica L.) using fluorescent SSR markers. Tree Genet Genomes 5: 435-446.
4. Moncada P, McCouch S (2004) Simple sequence repeat diversity in diploid and tetraploid Coffea species. Genome 47: 501-509.
5. Cristancho MA, Gaitán A (2008) Isolation, Characterization and Amplification of Simple Sequence Repeat Loci in Coffee. Crop Breed Appl Biotechnol 8: 321-329.
6. Chaparro A, Cristancho MA, Gaitán AL, Cortina H (2004) Genetic diversity of Coffea arabica L. from Ethiopia using RAPD markers. Genet Resour Crop Evol 51: 291-297.
7. Herrera J, Alvarado G, Cortina H, Combes M, Romero G, et al. (2009) Genetic analysis of partial resistance to coffee leaf rust (Hemileia vastatrix Berk & Br.) introgressed into the cultivated Coffea arabica L. from the diploid C. canephora species. Euphytica 167: 57-67.
8. Cristancho MA, Escobar C (2008) Transferability of SSRs markers from related Uredinales species to the coffee rust (Hemileia vastatrix). Genet Mol Res 7: 1186-1192.
9. Galvis CA, Leguizamón JE, Gaitán ÁL, Mejía JF, Álvarez E, et al. (2007) Detection and identification of a 16SrIII-related phytoplasma associated with coffee crispiness disease in Colombia. Plant Dis 91: 248-252.
10. Marin M, Castro B, Gaitan A, Preisig O, Wingfield B, Wingfield MJ (2003) Relationships of Ceratocystis fimbriata isolates from Colombian Coffee-Growing Regions Based on Molecular Data and Pathogenicity. J Phytopathol 151: 395-401.
11. Gaitan A, Valderrama AM, Saldarriaga G, Velez P, Bustillo A (2002) Genetic variability of Beauveria bassiana associated with the Coffee Berry Borer Hypothenemus hampei and other insects. Mycol Res 106: 1307-1314.
12. Garnica DP, Pinzon AM, Quesada-Ocampo LM, Bernal AJ, Barreto E, et al. (2006) Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus. BMC Genomics 7: 245.
13. Vargas AM, Quesada-Ocampo LM, Céspedes MC, Carreño N, Gonzalez A, et al. (2009) Characterization of Phytophthora infestans populations in Colombia: first report of the A2 mating type. Phytopathology 99: 82-88.
14. Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, et al. (2009) Genome sequence and comparative analysis of the Irish potato famine pathogen Phytophthora infestans. Nature, Manuscript accepted.
15. Restrepo S, Myers K, del Pozo O, Martin GB, Hart A, et al. (2005) Gene profiling of a compatible interaction between Phytophthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase. Mol Plant Microbe Interact 18: 913-922.
16. Burgos JD, Moreno-Tovar P (1996) Zipf scaling behavior in the immune system. BioSystem 39: 227-232.
17. González AF, Covo V, Medina LM, Vives-Florez M, Achenie L (2008) Quorum quenching analysis in Pseudomonas aeruginosa and Escherichia coli: network topology and inhibition mechanism effect on the optimized inhibitor dose. Bioprocess and Biosyst Eng 32: 545-556.
18. Villamizar M, Cuervo N, Lozano G, Orduz S, Restrepo S, et al. (2009) Mesoscale Modeling of the Bacillus thuringiensis sporulation network based on stochastic kinetics and its application for in silico scale-down. Proceedings International Workshop on High Performance Computational Systems Biology (HiBi 2009), Trento, Italy.
19. Mejía J, Racines F, Velasco N, Cortes M, Vives-Florez M, et al. (2009) Genome Scale Modeling of Pseudomonas aeruginosa in a microbial air-cathode single chamber fuel cell. National Meeting American Institute of Chemical Engineers (AIChE). Nashville, USA.
20. Alvarez A, Bernal A, González Barrios AF (2009) Virtual Screening of Quenchers for the Signal 3-Hydroxypalmitic Acid Methyl Ester in Ralstonia solanacearum. National Meeting American Institute of Chemical Engineers (AIChE). Nashville, USA.
21. Pinzón A, Reguero M, Barreto E (2006) ENKI-DB: Molecular and taxonomic data integration system for Colombian species. Rev Colomb Biotecnol 7(1): 65-75.
22. Stads GJ, Romano L (2008) Colombia. ASTI Country Brief No. 39. Washington, D.C. and Bogotá: International Food Policy Research Institute and National Agricultural Research Institute.
23. Cristancho MA, Escobar C, Ocampo JD (2007) Evolution of races of Hemileia vastatrix in Colombia. Cenicafé 58: 165-174.