Survey and DNA barcoding of poaceae in flat rock cedar glades and barrens state natural area, Murfreesboro, Tennessee

Castanea

Volumn 76, Issue 3, 2011, Pages 300-310

  Drumwright, Abby M ^a,b   Allen, Brian W ^a,c   Huff, Krista A ^a   Ritchey, Patricia A ^a   Cahoon, A Bruce ^a  

^a MIDDLE TENNESSEE STATE UNIVERSITY   (United States)

^b Pope John Paul II High School   (United States)

^c JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SURVEY; DNA FINGERPRINTING; FLOWERING; GRASS; GROWING SEASON; IDENTIFICATION METHOD; OPEN SPACE; PLASTID; POPULATION DISTRIBUTION; PRISTINE ENVIRONMENT; VARIANCE ANALYSIS;

MURFREESBORO; TENNESSEE; UNITED STATES;

DICHANTHELIUM SCOPARIUM; ELYMUS; ELYMUS HYSTRIX; POACEAE;

EID: 80053981923     PISSN: 00087475     EISSN: None     Source Type: Journal    
DOI: 10.2179/11-005.1     Document Type: Review

References (40)

1. Baskin, C.C. and J.M. Baskin. 1975. The cedar glade flora of Bullitt County, Kentucky. Castanea 40:184-190.
2. Baskin, C.C. and J.M. Baskin. 1977. An undescribed cedar glade community in Middle Tennessee. Castanea 42:140-145.
3. Baskin, J.M. and C.C. Baskin. 1996. Bessey Picklesimer's little known quantitative study on the vegetation of a cedar glade in the central basin of Tennessee. Castanea 61:25-37.
4. Baskin, J.M. and C.C. Baskin. 2003. The vascular flora of cedar glades of the southeastern United States and its phytogeo-graphical relationships. J. Torrey Bot. Soc. 130:101-118. (Pubitemid 36821650)
5. Baskin, J.M. and C.C. Baskin. 2004. History of the use of "cedar glades" and other descriptive terms for vegetation on rocky limestone soils in the central basin of Tennessee. Bot. Rev. 70:403-424. (Pubitemid 43793123)
6. Baskin, J.M., C.C. Baskin, and E.W. Chester. 1994. The big barrens region of Kentucky and Tennessee: further observations and considerations. Castanea 59:226-254.
7. Chen, J. and S. Dellaporta. 1994. Urea-based plant DNA miniprep. p. 526-527. In: Wal-bot, V. (ed.). The maize handbook. Springer-Verlag, New York, New York.
8. Clark, L.G., W. Zhang, and J.F. Wendel. 1995. A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Syst. Bot. 20:436-460. (Pubitemid 3016320)
9. Consortium for the Barcode of Life (CBOL) Plant Working Group. 2009. A DNA barcode for land plants. Proc. Natl. Acad. Sci. 106:12794-12797.
10. Cuénoud, P., V. Savolainen, L.W. Chatrou, M. Powell, R.J. Grayer, and M.W. Chase. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Amer. J. Bot. 89:132-144. (Pubitemid 34196580)
11. DeSelm, H.R., B.E. Wofford, R. Kral, and E.W. Chester. 1994. An annotated list of grasses (Poaceae, Gramineae) of Tennessee. Casta-nea 59:338-353.
12. Diekmann, K., T.R. Hodkinson, E. Fricke, and S. Barth. 2008. An optimized chloroplast DNA extraction protocol for grasses (Poa-ceae) proves suitable for whole plastid genome sequencing and SNP detection. PLoS ONE 3:e2813.
13. Estes, D. and J. Beck. 2005. Sporobolus heterolepis (Poaceae), new to Tennessee. Sida, Contr. Bot. 21:1923-1926. (Pubitemid 41176979)
14. Freeman, C.P. 1953. Ecology of the cedar glade vegetation near Nashville, Tennessee. George Peabody College for Teachers, Nashville, Tennessee.
15. Gould, F.W. and C.A. Clark. 1978. Dichanthe-lium (Poaceae) in the United States and Canada. Ann. Missouri Bot. Gard. 65: 1088-1132.
16. Harper, R.M. 1926. The cedar glades of Middle Tennessee. Ecology 7:48-54.
17. Hemmerly, T.E. 1990. Wildflowers of the central south. Vanderbilt University Press, Nashville, Tennessee.
18. Hitchcock, A.S. and A. Chase. 1971. Manual of the Grasses of the United States. Dover, New York, New York.
19. Honjo, M., S. Ueno, Y. Tsumura, I. Washitani, and R. Ohsawa. 2004. Phylogeographic study based on intraspecific sequence variation of chloroplast DNA for the conservation of genetic diversity in the Japanese endangered species Primul sieboldii. Biol. Conserv. 120:211-220.
20. Huang, X. and A. Madan. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9:868-877. (Pubitemid 29488446)
21. Jones, R.L. 2005. Plant life of Kentucky. The University Press of Kentucky, Lexington, Kentucky.
22. Jukes, T.H. and R. Cantor. 1969. Evolution of protein molecules. In: Munro, N. (ed.). Mammalian protein metabolism. Academic Press, New York, New York.
23. Kellogg, E.A. 1998. Relationships of cereal crops and other grasses. Proc. Natl. Acad. Sci. 95:2005-2010. (Pubitemid 28145881)
24. Kress, W.J. and D.L. Erickson. 2007. A two-locus global DNA barcode for land plants: the coding rbcL gene compliments the non-coding trnH-psbA spacer region. PLoS ONE 2:e508.
25. Kress, W.J. and D.L. Erickson. 2008. DNA Barcodes: Genes, genomics, and bioinforma-tics. Proc. Natl. Acad. Sci. 105:2761-2762. (Pubitemid 351723617)
26. Lahaye, R., M. Van der Bank, D. Bogarin, J. Warner, F. Pupulin, G. Gigot, O. Maurin, S. Duthoit, T.G. Barraclough, and V. Savolai-nen. 2008. DNA barcoding the floras of biodiversity hotspots. Proc. Natl. Acad. Sci. 105:2923-2928. (Pubitemid 351723645)
27. Larkin, M.A., G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, R. Lopez, J.D. Thompson, T.J. Gibson, and D.G. Hig-gins. 2007. ClustalW and ClustalX version 2. Bioinformatics 23:2947-2948.
28. Lawless, P.J., J.M. Baskin, and C.C. Baskin. 2006. Xeric limestone prairies of the Eastern United States. Bot. Rev. 72:235-272. (Pubitemid 44566353)
29. Le Clerc, J., J.R. Starr, R.D. Bull, and J.M. Saarela. 2010. A regional approach to plant DNA barcoding provides high species resolution of sedges (Carex and Kobresia, Cyper-aceae) in the Canadian arctic archipelago. Molec. Ecol. Resour. 10:69-91.
30. Librado, P. and J. Rozas. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
31. Meyer, C.P. and G. Paulay. 2005. DNA barcoding: error rates based on comprehensive sampling. PLoS Biology 3:e422.
32. Nei, M. 1997. Molecular evolutionary genetics. Columbia University Press, New York, New York.
33. Pohl, R.W. 1978. How to know the grasses, 3rd ed. WCB/McGraw-Hill, New York, New York.
34. Quarterman, E. 1950. Ecology of cedar glades. I. Distribution of glade flora in Middle Tennessee. Bull. Torrey Bot. Club 77:1-9.
35. Rudgers, J.A. and S. Orr. 2009. Non-native grass alters growth of native tree species via leaf and soil microbes. J. Ecol. 97:247-255.
36. Shaw, J., E.B. Lickey, J.T. Beck, S.B. Farmer, W. Liu, J. Miller, K.C. Siripun, C.T. Winder, E.E. Schilling, and R.L. Small. 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Amer. J. Bot. 92:142-166. (Pubitemid 40113117)
37. Spooner, D.M. 2009. DNA barcoding will frequently fail in complicated groups: An example in wild potatoes. Amer. J. Bot. 96:1177-1189.
38. Starr, J.R., R.F.C. Naczi, and B.N. Chouinard. 2009. Plant DNA barcodes and species resolution in sedges (Carex, hyperaceae). Molec. Ecol. Resour. 9(suppl. 1):151-163.
39. Wang, W., Y. Wu, Y. Yan, M. Ermakova, R. Kerstetter, and J. Messing. 2010. DNA barcoding of the Lemnaceae, a family of aquatic monocots. BMC Plant Biol 10:205.
40. Yano, O., H. Ikeda, and T. Hoshino. 2010. Phylogeography of the Japanese common sedge, Carex conica complex (Cyperaceae), based on chloroplast DNA sequence data and chromosomal variation. Amer. J. Bot. 97:1365-1376.