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Volumn 3, Issue 7, 2008, Pages

An optimized chloroplast DNA extraction protocol for grasses (Poaceae) proves suitable for whole plastid genome sequencing and SNP detection

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS DNA; CHLOROPLAST DNA; PLANT DNA;

EID: 50949104337     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002813     Document Type: Article
Times cited : (45)

References (24)
  • 1
    • 33750978642 scopus 로고    scopus 로고
    • The evolutionary origins of plant organelles
    • Daniell H, Chase C, eds, Dordrecht: Springer. pp
    • Gray MW (2004) The evolutionary origins of plant organelles. In: Daniell H, Chase C, eds. Molecular biology and biotechnology of plant organelles. Dordrecht: Springer. pp 87-108.
    • (2004) Molecular biology and biotechnology of plant organelles , pp. 87-108
    • Gray, M.W.1
  • 2
    • 13244259056 scopus 로고    scopus 로고
    • Diversity and evolutionary history of plastids and their hosts
    • Keeling PJ (2004) Diversity and evolutionary history of plastids and their hosts. Am J Bot 91(10): 1481-1493.
    • (2004) Am J Bot , vol.91 , Issue.10 , pp. 1481-1493
    • Keeling, P.J.1
  • 4
    • 0001433918 scopus 로고
    • Chloroplast DNA levels and the control of chloroplast division in light-grown wheat leaves
    • Boffey SA, Leech RM (1982) Chloroplast DNA levels and the control of chloroplast division in light-grown wheat leaves. Plant Physiol 69: 1387-1391.
    • (1982) Plant Physiol , vol.69 , pp. 1387-1391
    • Boffey, S.A.1    Leech, R.M.2
  • 5
    • 0001635951 scopus 로고
    • Rapid screening method to detect potential biparental inheritance of plastid DNA and results for over 200 angiosperm species
    • DOI 10.2307/2444695
    • Corriveau JL, Coleman AW (1988) Rapid screening method to detect potential biparental inheritance of plastid DNA and results for over 200 angiosperm species. Am J Bot 75 (10): 1443-1458, DOI 10.2307/2444695.
    • (1988) Am J Bot , vol.75 , Issue.10 , pp. 1443-1458
    • Corriveau, J.L.1    Coleman, A.W.2
  • 6
    • 84907594176 scopus 로고    scopus 로고
    • Supersizing: Progress in documenting and understanding grass species richness
    • Hodkinson TR, Parnell JAN, eds. Reconstructing the tree of life: systematics of species rich taxa, Florida: Taylor and Francis/CRC Press. pp
    • Hodkinson TR, Savolainen V, Jacobs SWL, Bouchenak-Khelladi Y, Kinney MS, et al. (2007) Supersizing: progress in documenting and understanding grass species richness. In: Hodkinson TR, Parnell JAN, eds. Reconstructing the tree of life: systematics of species rich taxa. The systematics association special series Vol. 72. Florida: Taylor and Francis/CRC Press. pp 275-295.
    • (2007) The systematics association special series , vol.72 , pp. 275-295
    • Hodkinson, T.R.1    Savolainen, V.2    Jacobs, S.W.L.3    Bouchenak-Khelladi, Y.4    Kinney, M.S.5
  • 7
    • 18144428771 scopus 로고    scopus 로고
    • Breakthrough in chloroplast genetic engineering of agronomically important crops
    • DOI 10.1016/j.tibtech.2005.03.008
    • Daniell H, Kumar S, Dufourmantel N (2005) Breakthrough in chloroplast genetic engineering of agronomically important crops. Trends Biotechnol 23: 238-245, DOI 10.1016/j.tibtech.2005.03.008.
    • (2005) Trends Biotechnol , vol.23 , pp. 238-245
    • Daniell, H.1    Kumar, S.2    Dufourmantel, N.3
  • 8
    • 0033514914 scopus 로고    scopus 로고
    • Overexpression of the Bacillus thuringiensis (Bt) Cry2Aa2 protein in chloroplasts confers resistance to plants against susceptible and Bt-resistant insects
    • Kota M, Daniell H, Varma S, Garczynski SF, Gould F, et al. (1999) Overexpression of the Bacillus thuringiensis (Bt) Cry2Aa2 protein in chloroplasts confers resistance to plants against susceptible and Bt-resistant insects. Proc Natl Acad Sci USA 96: 1840-1845.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 1840-1845
    • Kota, M.1    Daniell, H.2    Varma, S.3    Garczynski, S.F.4    Gould, F.5
  • 9
    • 0031979072 scopus 로고    scopus 로고
    • Containment of herbicide resistance through genetic engineering of the chloroplast genome
    • DOI 10.1038/nbt0498-345
    • Daniell H, Datta R, Varma S, Gray S, Lee SB (1998) Containment of herbicide resistance through genetic engineering of the chloroplast genome. Nat Biotechnol 16: 345-348, DOI 10.1038/nbt0498-345.
    • (1998) Nat Biotechnol , vol.16 , pp. 345-348
    • Daniell, H.1    Datta, R.2    Varma, S.3    Gray, S.4    Lee, S.B.5
  • 10
    • 0035193462 scopus 로고    scopus 로고
    • Expression of an antimicrobial peptide via the chloroplast genome to control phytopathogenic bacteria and fungi
    • DOI 10.1104/pp.010233
    • DeGray G, Rajasekaran K, Smith F, Sanford J, Daniell H (2001) Expression of an antimicrobial peptide via the chloroplast genome to control phytopathogenic bacteria and fungi. Plant Physiol 127: 852-862, DOI 10.1104/pp.010233.
    • (2001) Plant Physiol , vol.127 , pp. 852-862
    • DeGray, G.1    Rajasekaran, K.2    Smith, F.3    Sanford, J.4    Daniell, H.5
  • 11
    • 0032852381 scopus 로고    scopus 로고
    • Fluorescent antibiotic resistance marker for tracking plastid transformation in higher plants
    • DOI 10.1038/12907
    • Khan MS, Maliga P (1999) Fluorescent antibiotic resistance marker for tracking plastid transformation in higher plants. Nat Biotechnol 17: 910-915, DOI 10.1038/12907.
    • (1999) Nat Biotechnol , vol.17 , pp. 910-915
    • Khan, M.S.1    Maliga, P.2
  • 12
    • 33745870868 scopus 로고    scopus 로고
    • Plastid transformation in the monocotyledonous cereal crop, rice (Oryza sativa) and transmission of transgenes to their progeny
    • Lee SM, Kang K, Chung H, Yoo SH, Xu XM, et al. (2006) Plastid transformation in the monocotyledonous cereal crop, rice (Oryza sativa) and transmission of transgenes to their progeny. Mol Cells 21/ 3: 401-410.
    • (2006) Mol Cells , vol.21 , Issue.3 , pp. 401-410
    • Lee, S.M.1    Kang, K.2    Chung, H.3    Yoo, S.H.4    Xu, X.M.5
  • 13
    • 35548983916 scopus 로고    scopus 로고
    • Extremely high cytoplasmic diversity in natural and breeding populations of Lolium (Poaceae)
    • DOI 10.1038/sj.hdy.6801030
    • McGrath S, Hodkinson TR, Barth S (2007) Extremely high cytoplasmic diversity in natural and breeding populations of Lolium (Poaceae). Heredity 99: 531-544, DOI 10.1038/sj.hdy.6801030.
    • (2007) Heredity , vol.99 , pp. 531-544
    • McGrath, S.1    Hodkinson, T.R.2    Barth, S.3
  • 14
    • 0027133894 scopus 로고
    • Characterisation of organellar DNA in alloplasmic lines of Brassica napus L
    • DOI 10.1111/j.1439-0523.1993.tb00628.x
    • Hallden C, Gertsson B, Sall T, Lind-Hallden C (1993) Characterisation of organellar DNA in alloplasmic lines of Brassica napus L. Plant Breed 111: 185-191, DOI 10.1111/j.1439-0523.1993.tb00628.x.
    • (1993) Plant Breed , vol.111 , pp. 185-191
    • Hallden, C.1    Gertsson, B.2    Sall, T.3    Lind-Hallden, C.4
  • 15
    • 35548954382 scopus 로고    scopus 로고
    • Regulation of nuclear gene expression by plastid signals
    • Moller SG, ed, Oxford: Blackwell Publishing. pp
    • Gray JC (2005) Regulation of nuclear gene expression by plastid signals. In: Moller SG, ed. Plastids. Oxford: Blackwell Publishing. pp 237-267.
    • (2005) Plastids , pp. 237-267
    • Gray, J.C.1
  • 16
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • DOI 10.1093/dnares/6.5.283
    • Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6: 283-290, DOI 10.1093/dnares/6.5.283.
    • (1999) DNA Res , vol.6 , pp. 283-290
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 17
    • 33645576010 scopus 로고    scopus 로고
    • The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: Complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum
    • DOI 10.1007/s00438-005-0092-6
    • Yukawa M, Tsudzuki T, Sugiura M (2006) The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum. Mol Gen Genomics 275: 367-373, DOI 10.1007/s00438-005-0092-6.
    • (2006) Mol Gen Genomics , vol.275 , pp. 367-373
    • Yukawa, M.1    Tsudzuki, T.2    Sugiura, M.3
  • 18
    • 34249803294 scopus 로고    scopus 로고
    • Sequencing cucumber (Cucumis sativus L.) chloroplast genomes identifies differences between chilling-tolerant and - susceptible cucumber lines
    • Chung SM, Gordon VS, Staub JE (2007) Sequencing cucumber (Cucumis sativus L.) chloroplast genomes identifies differences between chilling-tolerant and - susceptible cucumber lines. Genome 50: 215-225.
    • (2007) Genome , vol.50 , pp. 215-225
    • Chung, S.M.1    Gordon, V.S.2    Staub, J.E.3
  • 19
    • 2442645495 scopus 로고    scopus 로고
    • A comparison of rice chloroplast genomes
    • Tang J, Xia H, Cao M, Zhang X, Zeng W, et al. (2004) A comparison of rice chloroplast genomes. Plant Physiol 135: 412-420.
    • (2004) Plant Physiol , vol.135 , pp. 412-420
    • Tang, J.1    Xia, H.2    Cao, M.3    Zhang, X.4    Zeng, W.5
  • 20
    • 33847311462 scopus 로고    scopus 로고
    • DNA banking for Plant breeding, biotechnology and biodiversity evaluation
    • DOI 10.1007/s10265-006-0059-7
    • Hodkinson TR, Waldren S, Parnell JAN, Kelleher CT, Salamin K, et al. (2007) DNA banking for Plant breeding, biotechnology and biodiversity evaluation. J Plant Res 120: 17-29, DOI 10.1007/s10265-006-0059-7.
    • (2007) J Plant Res , vol.120 , pp. 17-29
    • Hodkinson, T.R.1    Waldren, S.2    Parnell, J.A.N.3    Kelleher, C.T.4    Salamin, K.5
  • 21
    • 77957046363 scopus 로고
    • Isolation and structural-analysis of chloroplast DNA
    • DOI 10.1016/0076-6879(86)18072-4
    • Palmer JD (1986) Isolation and structural-analysis of chloroplast DNA. Method Enzymol 118: 167-186, DOI 10.1016/0076-6879(86)18072-4.
    • (1986) Method Enzymol , vol.118 , pp. 167-186
    • Palmer, J.D.1
  • 22
    • 0021763934 scopus 로고
    • Preparation of chloroplast DNA from pea plastids isolated in a medium of high ionic-strength
    • DOI 10.1016/0003-2697(84)90452-4
    • Bookjans G, Stummann BM, Henningsen KW (1984) Preparation of chloroplast DNA from pea plastids isolated in a medium of high ionic-strength. Anal Biochem 141: 244-247, DOI 10.1016/0003-2697(84)90452-4.
    • (1984) Anal Biochem , vol.141 , pp. 244-247
    • Bookjans, G.1    Stummann, B.M.2    Henningsen, K.W.3
  • 23
    • 19944424442 scopus 로고    scopus 로고
    • Methods for obtaining and analyzing whole chloroplast genome sequences
    • Zimmer E, Roalson E, eds, Part B. San Diego: Elsevier Academic Press Inc. pp
    • Jansen RK, Raubeson LA, Boore JL, DePamphilis CW, Chumley TW, et al. (2005) Methods for obtaining and analyzing whole chloroplast genome sequences. In: Zimmer E, Roalson E, eds. Molecular Evolution: Producing the Biochemical Data, Part B. San Diego: Elsevier Academic Press Inc. pp 348-384.
    • (2005) Molecular Evolution: Producing the Biochemical Data , pp. 348-384
    • Jansen, R.K.1    Raubeson, L.A.2    Boore, J.L.3    DePamphilis, C.W.4    Chumley, T.W.5
  • 24
    • 38249021757 scopus 로고
    • A method for evolutionary studies on RFLP of chloroplast DNA, applicable to a range of plant species
    • DOI 10.1016/ 0305-1978(89)90041-0
    • Sandbrink JM, Vellekoop P, Van Ham R, Van Brederode J (1989) A method for evolutionary studies on RFLP of chloroplast DNA, applicable to a range of plant species. Biochem Syst Ecol 17 (1): 45-49, DOI 10.1016/ 0305-1978(89)90041-0.
    • (1989) Biochem Syst Ecol , vol.17 , Issue.1 , pp. 45-49
    • Sandbrink, J.M.1    Vellekoop, P.2    Van Ham, R.3    Van Brederode, J.4


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