메뉴 건너뛰기




Volumn 189, Issue 2, 2011, Pages 633-644

Estimating contemporary effective population size on the basis of linkage disequilibrium in the face of migration

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; GENE LINKAGE DISEQUILIBRIUM; GENE POOL; GENETIC PARAMETERS; GENETIC VARIABILITY; HUMAN; INBREEDING; MATHEMATICAL COMPUTING; MIGRATION; POPULATION SIZE; PRIORITY JOURNAL; SAMPLE SIZE;

EID: 80053967558     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.132233     Document Type: Article
Times cited : (194)

References (40)
  • 1
    • 22144499620 scopus 로고    scopus 로고
    • An efficient Monte Carlo method for estimating Ne from temporally spaced samples using a coalescent based likelihood
    • e from temporally spaced samples using a coalescent based likelihood. Genetics 170: 955-967
    • (2005) Genetics , vol.170 , pp. 955-967
    • Anderson, E.C.1
  • 2
    • 0034952180 scopus 로고    scopus 로고
    • EasyPop (version 1.7): A computer program for population genetics simulations
    • Balloux, F., 2001 EasyPop (version 1.7): a computer program for population genetics simulations. J. Hered. 92: 301-302
    • (2001) J. Hered , vol.92 , pp. 301-302
    • Balloux, F.1
  • 3
    • 0021678547 scopus 로고
    • Group selection for a polygenic behavioral trait: Estimating the degree of population subdivision
    • Crow, J. F., and K. Aoki, 1984 Group selection for a polygenic behavioral trait: estimating the degree of population subdivision. Proc. Natl. Acad. Sci. USA 81: 6073-6077
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 6073-6077
    • Crow, J.F.1    Aoki, K.2
  • 4
    • 33745043543 scopus 로고    scopus 로고
    • Estimating effective population size from linkage disequilibrium: Severe bias using small samples
    • England, P. R., J.-M. Cornuet, P. Berthier, D. A. Tallmon, and G. Luikart, 2006 Estimating effective population size from linkage disequilibrium: severe bias using small samples. Conserv. Genet. 7: 303-308
    • (2006) Conserv. Genet , vol.7 , pp. 303-308
    • England, P.R.1    Cornuet, J.-M.2    Berthier, P.3    Tallmon, D.A.4    Luikart, G.5
  • 5
    • 0019771734 scopus 로고
    • Estimation of effective population size from data on linkage disequilibrium
    • Hill, W. G., 1981 Estimation of effective population size from data on linkage disequilibrium. Genet. Res. 38: 209-216
    • (1981) Genet. Res , vol.38 , pp. 209-216
    • Hill, W.G.1
  • 6
    • 35549004419 scopus 로고    scopus 로고
    • Unbiased estimator for genetic drift and effective population size
    • Jorde, P. E., and N. Ryman, 2007 Unbiased estimator for genetic drift and effective population size. Genetics 177: 927-935
    • (2007) Genetics , vol.177 , pp. 927-935
    • Jorde, P.E.1    Ryman, N.2
  • 7
    • 33645676302 scopus 로고    scopus 로고
    • Genetic approaches for estimating the effective size of populations
    • Leberg, P., 2005 Genetic approaches for estimating the effective size of populations. J. Wildl. Manage. 69: 1385-1399
    • (2005) J. Wildl. Manage , vol.69 , pp. 1385-1399
    • Leberg, P.1
  • 8
    • 77952093315 scopus 로고    scopus 로고
    • Estimation of census and effective population sizes: The increasing usefulness of DNA-based approaches
    • Luikart, G., N. Ryman, D. A. Tallmon, M. K. Schwartz, and F. W. Allendorf, 2010 Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches. Conserv. Genet. 11: 355-373
    • (2010) Conserv. Genet , vol.11 , pp. 355-373
    • Luikart, G.1    Ryman, N.2    Tallmon, D.A.3    Schwartz, M.K.4    Allendorf, F.W.5
  • 9
    • 0015891902 scopus 로고
    • Linkage disequilibrium in subdivided populations
    • Nei, M., and W. Li, 1973 Linkage disequilibrium in subdivided populations. Genetics 75: 213-219
    • (1973) Genetics , vol.75 , pp. 213-219
    • Nei, M.1    Li, W.2
  • 10
    • 0019776310 scopus 로고
    • Genetic drift and estimation of effective population size
    • Nei, M., and F. Tajima, 1981 Genetic drift and estimation of effective population size. Genetics 98: 625-640
    • (1981) Genetics , vol.98 , pp. 625-640
    • Nei, M.1    Tajima, F.2
  • 11
    • 65549150328 scopus 로고    scopus 로고
    • Estimation of effective number of breeders from molecular coancestry of single cohort sample
    • Nomura, T., 2008 Estimation of effective number of breeders from molecular coancestry of single cohort sample. Evol. Appl. 1: 462-474
    • (2008) Evol. Appl , vol.1 , pp. 462-474
    • Nomura, T.1
  • 12
    • 1642442709 scopus 로고    scopus 로고
    • Genetic assignment methods for the direct, real-time estimation of migration rate: A simulation-based exploration of accuracy and power
    • Paetkau, D., R. Slade, M. Burden, and A. Estoup, 2004 Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Mol. Ecol. 13: 55-65
    • (2004) Mol. Ecol , vol.13 , pp. 55-65
    • Paetkau, D.1    Slade, R.2    Burden, M.3    Estoup, A.4
  • 13
    • 47649115949 scopus 로고    scopus 로고
    • Genetic estimates of contemporary effective population size: What can they tell us about the importance of genetic stochasticity for wild population performance?
    • Palstra, F. P., and D. E. Ruzzante, 2008 Genetic estimates of contemporary effective population size: What can they tell us about the importance of genetic stochasticity for wild population performance? Mol. Ecol. 17: 3428-3447
    • (2008) Mol. Ecol , vol.17 , pp. 3428-3447
    • Palstra, F.P.1    Ruzzante, D.E.2
  • 14
    • 79956078854 scopus 로고    scopus 로고
    • Effective population size of current human population
    • Park, L., 2011 Effective population size of current human population. Genet. Res. Camb. 93: 105-114
    • (2011) Genet. Res. Camb , vol.93 , pp. 105-114
    • Park, L.1
  • 15
    • 6044264968 scopus 로고    scopus 로고
    • Geneclass2: A software for genetic assignment and firstgeneration migrant detection
    • Piry, S., A. Alapetite, J.-M. Cornuet, D. Paetkau, L. Baudouin et al., 2004 Geneclass2: a software for genetic assignment and firstgeneration migrant detection. J. Hered. 95: 536-539
    • (2004) J. Hered , vol.95 , pp. 536-539
    • Piry, S.1    Alapetite, A.2    Cornuet, J.-M.3    Paetkau, D.4    Baudouin, L.5
  • 16
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J. K., M. Stephens, and P. Donnelly, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 17
    • 77952881453 scopus 로고    scopus 로고
    • Sampling properties of the heterozygote-excess estimator of the effective number of breeders
    • Pudovkin, A. I., O. L. Zhdanova, and D. Hedgecock, 2009 Sampling properties of the heterozygote-excess estimator of the effective number of breeders. Conserv. Genet. 11: 759-771
    • (2009) Conserv. Genet , vol.11 , pp. 759-771
    • Pudovkin, A.I.1    Zhdanova, O.L.2    Hedgecock, D.3
  • 18
    • 0030835444 scopus 로고    scopus 로고
    • Detecting immigration by using multilocus genotypes
    • USA
    • Rannala, B., and J. L. Mountain, 1997 Detecting immigration by using multilocus genotypes. Proc. Natl. Acad. Sci. USA 94: 9197-9201
    • (1997) Proc. Natl. Acad. Sci , vol.94 , pp. 9197-9201
    • Rannala, B.1    Mountain, J.L.2
  • 19
    • 1842276436 scopus 로고
    • The Wahlund effect for the two-locus model
    • Sinnock, P., 1975 The Wahlund effect for the two-locus model. Am. Nat. 109: 565-570
    • (1975) Am. Nat , vol.109 , pp. 565-570
    • Sinnock, P.1
  • 20
    • 0015070635 scopus 로고
    • Linkage disequilibrium and homozygosity of chromosome segments in finite populations
    • Sved, J. A., 1971 Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor. Popul. Biol. 2: 125-141
    • (1971) Theor. Popul. Biol , vol.2 , pp. 125-141
    • Sved, J.A.1
  • 21
    • 38949178372 scopus 로고    scopus 로고
    • ONeSamp: A program to estimate effective population size using approximate Bayesian computation
    • Tallmon, D. A., A. Koyuk, G. Luikart, and M. A. Beaumont, 2008 ONeSamp: a program to estimate effective population size using approximate Bayesian computation. Mol. Ecol. Res. 8: 299-301
    • (2008) Mol. Ecol. Res , vol.8 , pp. 299-301
    • Tallmon, D.A.1    Koyuk, A.2    Luikart, G.3    Beaumont, M.A.4
  • 22
    • 34147165220 scopus 로고    scopus 로고
    • Recent human effective population size estimated from linkage disequilibrium
    • Tenesa, A., P. Navarro, B. J. Hayes, D. L. Duffy, G. M. Clarke et al., 2007 Recent human effective population size estimated from linkage disequilibrium. Genome Res. 17: 520-526
    • (2007) Genome Res , vol.17 , pp. 520-526
    • Tenesa, A.1    Navarro, P.2    Hayes, B.J.3    Duffy, D.L.4    Clarke, G.M.5
  • 23
    • 0035108501 scopus 로고    scopus 로고
    • Estimation of effective population size and migration rate from one-and two-locus identity measures
    • Vitalis, R., and D. Couvet, 2001 Estimation of effective population size and migration rate from one-and two-locus identity measures. Genetics 157: 911-925
    • (2001) Genetics , vol.157 , pp. 911-925
    • Vitalis, R.1    Couvet, D.2
  • 24
    • 84982339813 scopus 로고
    • Zuzammensetzung von populationen und korrelation-serscheiunungen von standpunkt der vererbungslehre aus betrachtet
    • Wahlund, S., 1928 Zuzammensetzung von populationen und korrelation-serscheiunungen von standpunkt der vererbungslehre aus betrachtet. Hereditas 11: 65-106
    • (1928) Hereditas , vol.11 , pp. 65-106
    • Wahlund, S.1
  • 25
    • 0035704882 scopus 로고    scopus 로고
    • A pseudo-likelihood method for estimating effective population size from temporally spaced samples
    • Wang, J., 2001 A pseudo-likelihood method for estimating effective population size from temporally spaced samples. Genet. Res. 78: 243-257
    • (2001) Genet. Res , vol.78 , pp. 243-257
    • Wang, J.1
  • 26
    • 31344454299 scopus 로고    scopus 로고
    • Estimation of effective population sizes from data on genetic markers
    • Wang, J., 2005 Estimation of effective population sizes from data on genetic markers. Philos. Trans. R. Soc. Ser. B 360: 1395-1409
    • (2005) Philos. Trans. R. Soc. Ser. B , vol.360 , pp. 1395-1409
    • Wang, J.1
  • 27
    • 65549163137 scopus 로고    scopus 로고
    • A new method for estimating effective population size from a single sample of multilocus genotypes
    • Wang, J., 2009 A new method for estimating effective population size from a single sample of multilocus genotypes. Mol. Ecol. 18: 2148-2164
    • (2009) Mol. Ecol , vol.18 , pp. 2148-2164
    • Wang, J.1
  • 28
    • 0037280106 scopus 로고    scopus 로고
    • Estimating effective population size and migration rates from genetic samples over space and time
    • Wang, J. L., and M. C. Whitlock, 2003 Estimating effective population size and migration rates from genetic samples over space and time. Genetics 163: 429-446
    • (2003) Genetics , vol.163 , pp. 429-446
    • Wang, J.L.1    Whitlock, M.C.2
  • 29
    • 0024498122 scopus 로고
    • A generalized approach for estimating effective population size from temporal changes in allele frequency
    • Waples, R. S., 1989 A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics 121: 379-391
    • (1989) Genetics , vol.121 , pp. 379-391
    • Waples, R.S.1
  • 30
    • 33644878743 scopus 로고    scopus 로고
    • Genetic estimates of contemporary effective population size: To what time periods do the estimates apply?
    • Waples, R. S., 2005 Genetic estimates of contemporary effective population size: To what time periods do the estimates apply? Mol. Ecol. 14: 3335-3352
    • (2005) Mol. Ecol , vol.14 , pp. 3335-3352
    • Waples, R.S.1
  • 31
    • 33745015584 scopus 로고    scopus 로고
    • A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci
    • Waples, R. S., 2006 A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Conserv. Genet. 7: 167-184
    • (2006) Conserv. Genet , vol.7 , pp. 167-184
    • Waples, R.S.1
  • 32
    • 47249162403 scopus 로고    scopus 로고
    • LdNe: A program for estimating effective population size from data on linkage disequilibrium
    • Waples, R. S., and C. Do, 2008 LdNe: a program for estimating effective population size from data on linkage disequilibrium. Mol. Ecol. Res. 8: 753-756
    • (2008) Mol. Ecol. Res , vol.8 , pp. 753-756
    • Waples, R.S.1    Do, C.2
  • 33
    • 77954278662 scopus 로고    scopus 로고
    • Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: A largely untapped resource for applied conservation and evolution
    • e using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evol. Appl. 3: 244-262
    • (2010) Evol. Appl , vol.3 , pp. 244-262
    • Waples, R.S.1    Do, C.2
  • 34
    • 0001064318 scopus 로고
    • Gametic disequilibrium analysis as a means of identifying mixtures of salmon populations
    • Waples, R. S., and P. E. Smouse, 1990 Gametic disequilibrium analysis as a means of identifying mixtures of salmon populations. Am. Fish. Soc. Symp. 7: 439-458
    • (1990) Am. Fish. Soc. Symp , vol.7 , pp. 439-458
    • Waples, R.S.1    Smouse, P.E.2
  • 35
    • 79951737522 scopus 로고    scopus 로고
    • Inbreeding effective population size and parentage analysis without parents
    • Waples, R. S., and R. K. Waples, 2011 Inbreeding effective population size and parentage analysis without parents. Mol. Ecol. Res. 11(Suppl. 1): 162-171
    • (2011) Mol. Ecol. Res , vol.11 , Issue.SUPPL. 1 , pp. 162-171
    • Waples, R.S.1    Waples, R.K.2
  • 36
    • 33846483038 scopus 로고    scopus 로고
    • Temporal estimates of effective population size in species with overlapping generations
    • Waples, R. S., and M. Yokota, 2007 Temporal estimates of effective population size in species with overlapping generations. Genetics. 175: 219-233
    • (2007) Genetics , vol.175 , pp. 219-233
    • Waples, R.S.1    Yokota, M.2
  • 37
    • 0018332021 scopus 로고
    • Inferences about linkage disequilibrium
    • Weir, B. S., 1979 Inferences about linkage disequilibrium. Biometrics 35: 235-254
    • (1979) Biometrics , vol.35 , pp. 235-254
    • Weir, B.S.1
  • 38
    • 0003752712 scopus 로고    scopus 로고
    • Ed. 2. Sinauer Associates, Sunderland, MA
    • Weir, B. S., 1996 Genetic Data Analysis, Ed. 2. Sinauer Associates, Sunderland, MA.
    • (1996) Genetic Data Analysis
    • Weir, B.S.1
  • 39
    • 0019166197 scopus 로고
    • Effect of mating structure on variation in linkage disequilibrium
    • Weir, B. S., and W. G. Hill, 1980 Effect of mating structure on variation in linkage disequilibrium. Genetics 95: 447-488
    • (1980) Genetics , vol.95 , pp. 447-488
    • Weir, B.S.1    Hill, W.G.2
  • 40
    • 0037355101 scopus 로고    scopus 로고
    • Bayesian inference of recent migration rates using multilocus genotypes
    • Wilson, G. A., and B. Rannala, 2003 Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191.
    • (2003) Genetics , vol.163 , pp. 1177-1191
    • Wilson, G.A.1    Rannala, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.