Sampling properties of the heterozygote-excess estimator of the effective number of breeders

Conservation Genetics

Volumn 11, Issue 3, 2010, Pages 759-771

  Pudovkin, A I ^a   Zhdanova, O L ^b   Hedgecock, D ^c  

^a INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

^b INSTITUTE OF AUTOMATION AND CONTROL PROCESSES   (Russian Federation)

^c UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

D estimator; Effective number of parents; Highly fecund species; Juvenile cohort; Selander's D

Indexed keywords

ALLELE; BREEDING POPULATION; COMPUTER SIMULATION; CONSERVATION GENETICS; EFFECTIVE POPULATION SIZE; GAMETE; HETEROZYGOSITY; POPULATION VIABILITY ANALYSIS; REPRODUCTIVE STRATEGY; SAMPLING; SPECIES CONSERVATION;

INVERTEBRATA;

EID: 77952881453     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-009-9865-5     Document Type: Article

References (18)

1. Balloux F (2004) Heterozygote excess in small populations and the heterozygote-excess effective size. Evolution 58: 1891-1900.
2. Falconer DS (1989) Introduction to quantitative genetics, 3rd edn. Longman Scientific & Technical with J Wiley & Sons, Inc., New York.
3. Fan JB, Chee MS, Gunderson KL (2006) Highly parallel genomic assays. Nat Rev Genet 7: 632-644. doi: 10. 1038/nrg1901.
4. Hedgecock D (1994) Does variance in reproductive success limit effective population size of marine organisms? In: Beaumont AR (ed) Genetics and evolution of aquatic organisms. Chapman and Hall, London, pp 122-134.
5. b) inferred for a naturally spawned cohort of juvenile European flat oysters Ostrea edulis. Mar Biol (Berl) 150: 1173-1183. doi: 10. 1007/s00227-006-0441-y.
6. e/N ratio. Evolution 59: 1596-1599.
7. Launey S, Barre M, Gerard A, Naciri-Graven Y (2001) Population bottleneck and effective size in Bonamia ostrea-resistant populations of Ostrea edulis as inferred by microsatellite markers. Genet Res Camb 78: 259-270.
8. Levitan DR, Sewell MA, Chia FS (1992) How distribution and abundance influence fertilization success in the sea-urchin Strongylocentrotus franciscanus. Ecology 73: 248-254. doi: 10. 2307/1938736.
9. Luikart G, Cornuet J (1999) Estimating the effective number of breeders from heterozygote excess in progeny. Genetics 151: 1211-1216.
10. Mead KS, Denny MW (1995) The effects of hydrodynamic shear-stress on fertilization and early development of the purple sea-urchin Strongylocentrotus purpuratus. Biol Bull 188: 46-56. doi: 10. 2307/1542066.
11. Morin PA, Luikart G, Wayne RK (2004) SNPs in ecology, evolution and conservation. Trends Ecol Evol 19: 208-216. doi: 10. 1016/j. tree. 2004. 01. 009.
12. Pudovkin AI, Zaykin DV, Hedgecock D (1996) On the potential for estimating the effective number of breeders from heterozygote-excess in progeny. Genetics 144: 383-387.
13. Rasmussen DI (1979) Sibling clusters and gene frequencies. Am Nat 113: 948-951. doi: 10. 1086/283449.
14. Robertson A (1965) The interpretation of genotypic ratios in domestic animal populations. Anim Prod 7: 319-324.
15. Tallmon DA, Koyuk A, Luikart G, Beaumont MA (2008) ONeSAMP: a program to estimate effective population size using approximate Bayesian computation. Mol Ecol Resour 8: 299-301. doi: 10. 1111/j. 1471-8286. 2007. 01997. x.
16. Waples RS (1991) Genetic methods for estimating the effective size of cetacean populations. In: Hoelzel AR (ed) Genetic ecology of whales and dolphins. Intl. Whaling Comm, London, pp 279-300 Special Issue 13.
17. Waples RS, Do C (2008) LDNE: a program for estimating effective population size from data on linkage disequilibrium. Mol Ecol Resour 8: 753-756. doi: 10. 1111/j. 1755-0998. 2007. 02061. x.
18. b from genotype frequencies in the progeny. J Hered 99: 694-695. doi: 10. 1093/jhered/esn061.