-
1
-
-
3142665525
-
GOstat: Find statistically overrepresented Gene Ontologies with a group of genes
-
DOI 10.1093/bioinformatics/bth088
-
Beissbarth T, Speed TP (2004) GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 20(9):1464-1465 (Pubitemid 38931420)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1464-1465
-
-
Beissbarth, T.1
Speed, T.P.2
-
2
-
-
24344459066
-
A genome-wide comparison of recent chimpanzee and human segmental duplications
-
DOI 10.1038/nature04000, PII N04000
-
Cheng Z, Ventura M, She X, Khaitovich P, Graves T, Osoegawa K, Church D, DeJong P, Wilson RK, Paabo S, Rocchi M, Eichler EE (2005) A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature 437(7055):88-93 (Pubitemid 41613429)
-
(2005)
Nature
, vol.437
, Issue.7055
, pp. 88-93
-
-
Cheng, Z.1
Ventura, M.2
She, X.3
Khaitovich, P.4
Graves, T.5
Osoegawa, K.6
Church, D.7
DeJong, P.8
Wilson, R.K.9
Paabo, S.10
Rocchi, M.11
Eichler, E.E.12
-
3
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
DOI 10.1093/bioinformatics/bti610
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, TalonM, RoblesM(2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21(18):3674-3676 (Pubitemid 41264107)
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
4
-
-
24344466250
-
A century of getting to know the chimpanzee
-
DOI 10.1038/nature03999, PII N03999
-
de Waal FB (2005) A century of getting to know the chimpanzee. Nature 437(7055):56-59 (Pubitemid 41613425)
-
(2005)
Nature
, vol.437
, Issue.7055
, pp. 56-59
-
-
De Waal, F.B.M.1
-
5
-
-
0029447018
-
Sexual selection and ejaculatory frequencies in primates
-
Dixson AF (1995) Sexual selection and ejaculatory frequencies in primates. Folia Primatol (Basel) 64(3):146-152
-
(1995)
Folia Primatol (Basel)
, vol.64
, Issue.3
, pp. 146-152
-
-
Dixson, A.F.1
-
6
-
-
5444260637
-
Sexual behavior, reproductive physiology and sperm competition in male mammals
-
DOI 10.1016/j.physbeh.2004.08.022, PII S0031938404003622, Male Sexual Function
-
Dixson AF, Anderson MJ (2004) Sexual behavior, reproductive physiology and sperm competition in male mammals. Physiol Behav 83(2):361-371 (Pubitemid 39361575)
-
(2004)
Physiology and Behavior
, vol.83
, Issue.2
, pp. 361-371
-
-
Dixson, A.F.1
Anderson, M.J.2
-
7
-
-
0030007094
-
Large-scale search for genes on which positive selection may operate
-
Endo T, Ikeo K, Gojobori T (1996) Large-scale search for genes on which positive selection may operate. Mol Biol Evol 13(5):685-690 (Pubitemid 26131890)
-
(1996)
Molecular Biology and Evolution
, vol.13
, Issue.5
, pp. 685-690
-
-
Endo, T.1
Ikeo, K.2
Gojobori, T.3
-
8
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8(3):186-194 (Pubitemid 28177230)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
9
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8(3):175-185 (Pubitemid 28177229)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
10
-
-
18144430620
-
Effects of sulfasalazine on sperm acrosome reaction and gene expression in the male reproductive organs of rats
-
DOI 10.1093/toxsci/kfi071
-
Fukushima T, Kato M, Adachi T, Hamada Y, Horimoto M, Komiyama M, Mori C, Horii I (2005) Effects of sulfasalazine on sperm acrosome reaction and gene expression in the male reproductive organs of rats. Toxicol Sci 85(1):675-682 (Pubitemid 40614297)
-
(2005)
Toxicological Sciences
, vol.85
, Issue.1
, pp. 675-682
-
-
Fukushima, T.1
Kato, M.2
Adachi, T.3
Hamada, Y.4
Horimoto, M.5
Komiyama, M.6
Mori, C.7
Horii, I.8
-
11
-
-
0019726563
-
Testis weight, body weight and breeding system in primates
-
DOI 10.1038/293055a0
-
Harcourt AH, Harvey PH, Larson SG, Short RV (1981) Testis weight, body weight and breeding system in primates. Nature 293(5827):55-57 (Pubitemid 11006040)
-
(1981)
Nature
, vol.293
, Issue.5827
, pp. 55-57
-
-
Harcourt, A.H.1
Harvey, P.H.2
Larson, S.G.3
Short, R.V.4
-
12
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
DOI 10.1101/gr.9.9.868
-
Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9(9):868-877 (Pubitemid 29488446)
-
(1999)
Genome Research
, vol.9
, Issue.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
13
-
-
75749129731
-
Chimpanzee and human y chromosomes are remarkably divergent in structure and gene content
-
Hughes JF, Skaletsky H, Pyntikova T, Graves TA, van Daalen SK, Minx PJ, Fulton RS, McGrath SD, Locke DP, Friedman C, Trask BJ, Mardis ER, Warren WC, Repping S, Rozen S, Wilson RK, Page DC (2010) Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. Nature 463 (7280):536-539
-
(2010)
Nature
, vol.463
, Issue.7280
, pp. 536-539
-
-
Hughes, J.F.1
Skaletsky, H.2
Pyntikova, T.3
Graves, T.A.4
Van Daalen, S.K.5
Minx, P.J.6
Fulton, R.S.7
McGrath, S.D.8
Locke, D.P.9
Friedman, C.10
Trask, B.J.11
Mardis, E.R.12
Warren, W.C.13
Repping, S.14
Rozen, S.15
Wilson, R.K.16
Page, D.C.17
-
14
-
-
18344396250
-
Odf2-deficient mother centrioles lack distal/subdistal appendages and the ability to generate primary cilia
-
DOI 10.1038/ncb1251
-
Ishikawa H, Kubo A, Tsukita S (2005) Odf2-deficient mother centrioles lack distal/subdistal appendages and the ability to generate primary cilia. Nat Cell Biol 7(5):517-524 (Pubitemid 40637412)
-
(2005)
Nature Cell Biology
, vol.7
, Issue.5
, pp. 517-524
-
-
Ishikawa, H.1
Kubo, A.2
Tsukita, S.3
Tsukita, S.4
-
15
-
-
84984761809
-
Comparative analysis of chimpanzee and human y chromosomes unveils complex evolutionary pathway
-
Kuroki Y, Toyoda A, Noguchi H, Taylor TD, Itoh T, Kim DS, Kim DW, Choi SH, Kim IC, Choi HH, Kim YS, Satta Y, Saitou N, Yamada T, Morishita S, Hattori M, Sakaki Y, Park HS, Fujiyama A (2006) Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway. Nat Genet 38(2):158-167
-
(2006)
Nat Genet
, vol.38
, Issue.2
, pp. 158-167
-
-
Kuroki, Y.1
Toyoda, A.2
Noguchi, H.3
Taylor, T.D.4
Itoh, T.5
Kim, D.S.6
Kim, D.W.7
Choi, S.H.8
Kim, I.C.9
Choi, H.H.10
Kim, Y.S.11
Satta, Y.12
Saitou, N.13
Yamada, T.14
Morishita, S.15
Hattori, M.16
Sakaki, Y.17
Park, H.S.18
Fujiyama, A.19
-
16
-
-
70349687236
-
Reexamining human origins in light of Ardipithecus ramidus
-
Lovejoy CO (2009) Reexamining human origins in light of Ardipithecus ramidus. Science 326(5949):74e71-74e78
-
(2009)
Science
, vol.326
, Issue.5949
-
-
Lovejoy, C.O.1
-
17
-
-
38349137710
-
The use of optical tweezers to study sperm competition and motility in primates
-
Nascimento JM, Shi LZ, Meyers S, Gagneux P, Loskutoff NM, Botvinick EL, Berns MW (2008) The use of optical tweezers to study sperm competition and motility in primates. J R Soc Interface 5(20):297-302
-
(2008)
J R Soc Interface
, vol.5
, Issue.20
, pp. 297-302
-
-
Nascimento, J.M.1
Shi, L.Z.2
Meyers, S.3
Gagneux, P.4
Loskutoff, N.M.5
Botvinick, E.L.6
Berns, M.W.7
-
18
-
-
25844500437
-
A genome-wide survey of structural variation between human and chimpanzee
-
DOI 10.1101/gr.4338005
-
Newman TL, Tuzun E, Morrison VA, Hayden KE, Ventura M, McGrath SD, Rocchi M, Eichler EE (2005) A genome-wide survey of structural variation between human and chimpanzee. Genome Res 15(10):1344-1356 (Pubitemid 41400900)
-
(2005)
Genome Research
, vol.15
, Issue.10
, pp. 1344-1356
-
-
Newman, T.L.1
Tuzun, E.2
Morrison, V.A.3
Hayden, K.E.4
Ventura, M.5
McGrath, S.D.6
Rocchi, M.7
Eichler, E.E.8
-
19
-
-
38849136475
-
Conserved and species-specific alternative splicing in mammalian genomes
-
Nurtdinov RN, Neverov AD, Favorov AV, Mironov AA, Gelfand MS (2007) Conserved and species-specific alternative splicing in mammalian genomes. BMC Evol Biol 7:249
-
(2007)
BMC Evol Biol
, vol.7
, pp. 249
-
-
Nurtdinov, R.N.1
Neverov, A.D.2
Favorov, A.V.3
Mironov, A.A.4
Gelfand, M.S.5
-
20
-
-
33744455443
-
Hotspots for copy number variation in chimpanzees and humans
-
DOI 10.1073/pnas.0602318103
-
Perry GH, Tchinda J, McGrath SD, Zhang J, Picker SR, Caceres AM, Iafrate AJ, Tyler-Smith C, Scherer SW, Eichler EE, Stone AC, Lee C (2006) Hotspots for copy number variation in chimpanzees and humans. Proc Natl Acad Sci USA 103 (21):8006-8011 (Pubitemid 43801043)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.21
, pp. 8006-8011
-
-
Perry, G.H.1
Tchinda, J.2
McGrath, S.D.3
Zhang, J.4
Picker, S.R.5
Caceres, A.M.6
Iafrate, A.J.7
Tyler-Smith, C.8
Scherer, S.W.9
Eichler, E.E.10
Stone, A.C.11
Lee, C.12
-
21
-
-
0037460985
-
TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
-
DOI 10.1093/bioinformatics/btg034
-
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5):651-652 (Pubitemid 36417060)
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 651-652
-
-
Pertea, G.1
Huang, X.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
Karamycheva, S.6
Lee, Y.7
White, J.8
Cheung, F.9
Parvizi, B.10
Tsai, J.11
Quackenbush, J.12
-
22
-
-
0346732315
-
Gene Fusion and Overlapping Reading Frames in the Mammalian Genes for 4E-BP3 and MASK
-
DOI 10.1074/jbc.M310761200
-
Poulin F, Brueschke A, Sonenberg N (2003) Gene fusion and overlapping reading frames in the mammalian genes for 4EBP3 and MASK. J Biol Chem 278(52):52290-52297 (Pubitemid 38035817)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.52
, pp. 52290-52297
-
-
Poulin, F.1
Brueschke, A.2
Sonenberg, N.3
-
23
-
-
0036847318
-
An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein
-
DOI 10.1093/emboj/cdf565
-
Pradet-Balade B, Medema JP, Lopez-Fraga M, Lozano JC, Kolfschoten GM, Picard A, Martinez AC, Garcia-Sanz JA, Hahne M (2002) An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein. EMBO J 21(21):5711-5720 (Pubitemid 35315271)
-
(2002)
EMBO Journal
, vol.21
, Issue.21
, pp. 5711-5720
-
-
Pradet-Balade, B.1
Medema, J.P.2
Lopez-Fraga, M.3
Lozano, J.C.4
Kolfschoten, G.M.5
Picard, A.6
Martinez, C.-A.7
Garcia-Sanz, J.A.8
Hahne, M.9
-
24
-
-
27744552983
-
Further characterization of reproductive abnormalities in mCd59b knockout mice: A potential new function of mCd59 in male reproduction
-
Qin X, Dobarro M, Bedford SJ, Ferris S, Miranda PV, Song W, Bronson RT, Visconti PE, Halperin JA (2005) Further characterization of reproductive abnormalities in mCd59b knockout mice: a potential new function of mCd59 in male reproduction. J Immunol 175(10):6294-6302 (Pubitemid 41598868)
-
(2005)
Journal of Immunology
, vol.175
, Issue.10
, pp. 6294-6302
-
-
Qin, X.1
Dobarro, M.2
Bedford, S.J.3
Ferris, S.4
Miranda, P.V.5
Song, W.6
Bronson, R.T.7
Visconti, P.E.8
Halperin, J.A.9
-
25
-
-
0030813504
-
Human immunodeficiency virus type 1 incorporates both glycosyl phosphatidylinositol-anchored CD55 and CD59 and integral membrane CD46 at levels that protect from complement-mediated destruction
-
Saifuddin M, Hedayati T, Atkinson JP, Holguin MH, Parker CJ, Spear GT (1997) Human immunodeficiency virus type 1 incorporates both glycosyl phosphatidylinositol-anchored CD55 and CD59 and integral membrane CD46 at levels that protect from complement-mediated destruction. J Gen Virol 78(Pt 8):1907-1911 (Pubitemid 27367673)
-
(1997)
Journal of General Virology
, vol.78
, Issue.8
, pp. 1907-1911
-
-
Saifuddin, M.1
Hedayati, T.2
Atkinson, J.P.3
Holguin, M.H.4
Parker, C.J.5
Spear, G.T.6
-
26
-
-
0038444037
-
Analysis of 5-end sequences of chimpanzee cDNAs
-
DOI 10.1101/gr.783103
-
Sakate R, Osada N, Hida M, Sugano S, Hayasaka I, Shimohira N, Yanagi S, Suto Y, Hashimoto K, Hirai M (2003) Analysis of 5′-end sequences of chimpanzee cDNAs. Genome Res 13(5):1022-1026 (Pubitemid 36621761)
-
(2003)
Genome Research
, vol.13
, Issue.5
, pp. 1022-1026
-
-
Sakate, R.1
Osada, N.2
Hida, M.3
Sugano, S.4
Hayasaka, I.5
Shimohira, N.6
Yanagi, S.7
Suto, Y.8
Hashimoto, K.9
Hirai, M.10
-
27
-
-
0034830955
-
A novel member of the RBCC family, Trif, expressed specifically in the spermatids of mouse testis
-
DOI 10.1016/S0925-4773(01)00485-3, PII S0925477301004853
-
Shyu HW, Hsu SH, Hsieh-Li HM, Li H (2001) A novel member of the RBCC family, Trif, expressed specifically in the spermatids of mouse testis. Mech Dev 108(1-2):213-216 (Pubitemid 32918193)
-
(2001)
Mechanisms of Development
, vol.108
, Issue.1-2
, pp. 213-216
-
-
Shyu, H.-W.1
Hsu, S.-H.2
Hsieh-Li, H.-M.3
Li, H.4
-
28
-
-
1542397212
-
Increased levels of sperm ubiquitin correlate with semen quality in men from a andrology laboratory clinic population
-
DOI 10.1093/humrep/deh131
-
Sutovsky P, Hauser R, Sutovsky M (2004) Increased levels of sperm ubiquitin correlate with semen quality in men from an andrology laboratory clinic population. Hum Reprod 19 (3):628-638 (Pubitemid 38344527)
-
(2004)
Human Reproduction
, vol.19
, Issue.3
, pp. 628-638
-
-
Sutovsky, P.1
Hausers, R.2
Sutovsky, M.3
-
29
-
-
0030775263
-
Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library
-
DOI 10.1016/S0378-1119(97)00411-3, PII S0378111997004113
-
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (1997) Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library. Gene 200(1-2):149-156 (Pubitemid 27460481)
-
(1997)
Gene
, vol.200
, Issue.1-2
, pp. 149-156
-
-
Suzuki, Y.1
Yoshitomo-Nakagawa, K.2
Maruyama, K.3
Suyama, A.4
Sugano, S.5
-
30
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
The Chimpanzee Sequencing and Analysis Consortium
-
The Chimpanzee Sequencing and Analysis Consortium (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437(7055):69-87
-
(2005)
Nature
, vol.437
, Issue.7055
, pp. 69-87
-
-
-
31
-
-
2542469907
-
A spermatogenesis-related gene expression profile in human spermatozoa and its potential clinical applications
-
DOI 10.1007/s00109-004-0526-3
-
Wang H, Zhou Z, Xu M, Li J, Xiao J, Xu ZY, Sha J (2004) A spermatogenesis-related gene expression profile in human spermatozoa and its potential clinical applications. J Mol Med 82 (5):317-324 (Pubitemid 38680289)
-
(2004)
Journal of Molecular Medicine
, vol.82
, Issue.5
, pp. 317-324
-
-
Wang, H.1
Zhou, Z.2
Xu, M.3
Li, J.4
Xiao, J.5
Xu, Z.-Y.6
Sha, J.7
-
32
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13(5):555-556 (Pubitemid 27480216)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.1
|