Analysis of 5′-end sequences of chimpanzee cDNAs

Genome Research

Volumn 13, Issue 5, 2003, Pages 1022-1026

  Sakate, Ryuichi ^a   Osada, Naoki ^b   Hida, Munetomo ^a   Sugano, Sumio ^a   Hayasaka, Ikuo ^c   Shimohira, Naoko ^a   Yanagi, Shinsuke ^a   Suto, Yumiko ^a   Hashimoto, Katsuyuki ^b   Hirai, Momoki ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^c SANWA KAGAKU KENKYUSHO CO LTD   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; NUCLEOTIDE; PRIMER DNA;

5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; BRAIN TISSUE; CHIMPANZEE; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA LIBRARY; DNA SEQUENCE; GENETIC CONSERVATION; GENETIC DATABASE; GENETIC VARIABILITY; LIVER; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SKIN; UNINDEXED SEQUENCE; ANIMAL; ANTIBODY SPECIFICITY; BRAIN LEVEL; CHEMISTRY; COMPARATIVE STUDY; DNA FLANKING REGION; EXPRESSED SEQUENCE TAG; FEMALE; GENETICS; HUMAN; MALE; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PAN TROGLODYTES;

ANIMALIA; MAMMALIA; PAN TROGLODYTES;

5' FLANKING REGION; ANIMALS; BRAIN CHEMISTRY; DNA PRIMERS; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; FEMALE; HUMANS; LIVER; MALE; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PAN TROGLODYTES; SEQUENCE ANALYSIS, DNA; SKIN;

EID: 0038444037     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.783103     Document Type: Article

References (21)

1. Adams, E.J. and Parham, P. 2001. Species-specific evolution of MHC class I genes in the higher primates. Immunol. Rev. 20: 41-64.
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
3. Brett, D., Pospisil, H., Valcarcel, J., Reich, J., and Bork, P. 2002. Alternative splicing and genome complexity. Nat. Genet. 30: 29-30.
4. Britten, R.J. 2002. Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels. Proc. Natl. Acad. Sci. 99: 13633-13635.
5. Chen, F.-C. and Li, W.-H. 2001. Genomic divergence between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68: 444-456.
6. Chen, F.-C., Vallender, E.J., Wang, H., Tzeng, C.S., and Li, W.-H. 2001. Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences. J. Hered. 92: 481-489.
7. Fujiyama, A., Watanabe, H., Toyoda, A., Taylor, T.D., Itoh, T., Tsai, S.-F., Park, H.-S., Yaspo, M.-L., Lehrach, H., Chen, Z,. et al. 2002. Construction and analysis of a human-chimpanzee comparative clone map. Science 295: 131-134.
8. Hida, M., Suzuki, Y., Sugano, S., Hashimoto, K., Terao, K., Hayasaka, I., and Hirai, M. 2000. Construction and preliminary characterization of full-length enriched cDNA libraries for nonhuman primates. Primate Res. 16: 95-110.
9. International Human Genome Sequencing Consortium 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
10. The International SNP Map Working Group 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
11. Jurka, J. 2000. Repbase update: A database and an electronic journal of repetitive elements. Trends Genet. 16: 418-420.
12. Kaessmann, H., Wiebe, V., and Paabo, S. 1999. Extensive nuclear DNA sequence diversity among chimpanzees. Science 286: 1159-1162.
13. Kaessmann, H., Wiebe, V., Weiss, G., and Paabo, S. 2001. Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nat. Genet. 27: 155-156.
14. Li, W.-H. 1993. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36: 96-99.
15. Maruyama, K. and Sugano, S. 1994. Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene 138: 171-174.
16. Miyata, T. and Yasunaga, T. 1980. Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application. J. Mol. Evol. 16: 23-36.
17. Sibley, C.G. and Ahlquist, J.E. 1984. The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization. J. Mol. Evol. 20: 2-15.
18. Sibley, C.G. and Ahlquist, J.E. 1987. DNA hybridization evidence of hominoid phylogeny: results from an expanded data set. J. Mol. Evol. 26: 99-121.
19. Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
20. Varki, A. 2000. A chimpanzee genome project is a biomedical imperative. Genome Res. 10: 1065-1070.
21. Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al. 2001. The sequence of the human genome. Science 291: 1304-1351.