PSI:Biology-materials repository: A biologist's resource for protein expression plasmids

Journal of Structural and Functional Genomics

Volumn 12, Issue 2, 2011, Pages 55-62

  Cormier, Catherine Y ^a   Park, Jin G ^a   Fiacco, Michael ^a   Steel, Jason ^a   Hunter, Preston ^a   Kramer, Jason ^a   Singla, Rajeev ^a   LaBaer, Joshua ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Plasmid; Protein expression; Protein structure initiative; PSI:Biology; Structural biology

Indexed keywords

ANALYTIC METHOD; ARTICLE; COST BENEFIT ANALYSIS; EXPRESSION VECTOR; GENETIC ANALYSIS; MEDICAL RESEARCH; MOLECULAR GENETICS; NONHUMAN; ONLINE SYSTEM; PLASMID; PRIORITY JOURNAL; PROCESS DEVELOPMENT; PROTEIN DATA BANK; PROTEIN DATABASE; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; ANIMAL; DATA BASE; GENE VECTOR; GENETIC DATABASE; GENETICS; HEALTH CARE FACILITY; HUMAN;

PROTEIN;

ANIMALS; BIOLOGICAL SPECIMEN BANKS; DATABASE MANAGEMENT SYSTEMS; DATABASES, GENETIC; GENETIC VECTORS; HUMANS; ONLINE SYSTEMS; PLASMIDS; PROTEINS;

EID: 80053631237     PISSN: 1345711X     EISSN: 15700267     Source Type: Journal    
DOI: 10.1007/s10969-011-9100-8     Document Type: Article

References (43)

1. Myler PJ, Stacy R, Stewart L, Staker BL, Van Voorhis WC, Varani G, Buchko GW (2009) Infect Disord Drug Targets 9(5):493-506
2. Williamson AR (2000) Nat Struct Biol 7(Suppl):953
3. Anderson WF (2009) Infect Disord Drug Targets 9(5):507-517
4. Yokoyama S, Hirota H, Kigawa T, Yabuki T, Shirouzu M, Terada T, Ito Y, Matsuo Y, Kuroda Y, Nishimura Y, Kyogoku Y, Miki K, Masui R, Kuramitsu S (2000) Nat Struct Biol 7(Suppl): 943-945
5. Hendrickson WA (2007) Structure 15(12):1528-1529
6. Lattman E (2004) Proteins 54(4):611-615
7. Norvell JC, Berg JM (2007) Structure 15(12):1519-1522
8. Chen L, Oughtred R, Berman HM, Westbrook J (2004) Bioin-formatics 20(16):2860-2862
9. Cormier CY, Mohr SE, Zuo D, Hu Y, Rolfs A, Kramer J, Taycher E, Kelley F, Fiacco M, Turnbull G, LaBaer J (2009) Nucleic Acids Res 38(Database issue):D743-D749
10. Watson JD, Todd AE, Bray J, Laskowski RA, Edwards A, Joachimiak A, Orengo CA, Thornton JM (2003) IUBMB life 55(4-5):249-255
11. Liu J, Hegyi H, Acton TB, Montelione GT, Rost B (2004) Proteins 56(2):188-200
12. Wunderlich Z, Acton TB, Liu J, Kornhaber G, Everett J, Carter P, Lan N, Echols N, Gerstein M, Rost B, Montelione GT (2004) Proteins 56(2):181-187
13. Park J, Hu Y, Murthy TV, Vannberg F, Shen B, Rolfs A, Hutti JE, Cantley LC, LaBaer J, Harlow E, Brizuela L (2005) Proc Natl Acad Sci USA 102(23):8114-8119
14. Witt AE, Hines LM, Collins NL, Hu Y, Gunawardane RN, Moreira D, Raphael J, Jepson D, Koundinya M, Rolfs A, Taron B, Isakoff SJ, Brugge JS, LaBaer J (2006) J Proteome Res 5(3): 599-610
15. Rolfs A, Hu Y, Ebert L, Hoffmann D, Zuo D, Ramachandran N, Raphael J, Kelley F, McCarron S, Jepson DA, Shen B, Baqui MM, Pearlberg J, Taycher E, DeLoughery C, Hoerlein A, Korn B, LaBaer J (2008) PLoS ONE 3(1):e1528
16. Hu Y, Rolfs A, Bhullar B, Murthy TV, Zhu C, Berger MF, Camargo AA, Kelley F, McCarron S, Jepson D, Richardson A, Raphael J, Moreira D, Taycher E, Zuo D, Mohr S, Kane MF, Williamson J, Simpson A, Bulyk ML, Harlow E, Marsischky G, Kolodner RD, LaBaer J (2007) Genome Res 17(4):536-543
17. LaBaer J, Qiu Q, Anumanthan A, Mar W, Zuo D, Murthy TV, Taycher H, Halleck A, Hainsworth E, Lory S, Brizuela L (2004) Genome Res 14(10B):2190-2200
18. Murthy T, Rolfs A, Hu Y, Shi Z, Raphael J, Moreira D, Kelley F, McCarron S, Jepson D, Taycher E, Zuo D, Mohr SE, Fernandez M, Brizuela L, LaBaer J (2007) PLoS ONE 2(6):e577
19. Rolfs A, Montor WR, Yoon SS, Hu Y, Bhullar B, Kelley F, McCarron S, Jepson DA, Shen B, Taycher E, Mohr SE, Zuo D, Williamson J, Mekalanos J, LaBaer J (2008) Proc Natl Acad Sci USA 105(11):4364-4369
20. Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, LaBaer J (2009) Nucleic Acids Res 37(Database issue):D365-D368
21. Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Sch-roeder M, Botstein D, Cherry JM (2004) Nucleic Acids Res 32(Database issue):D311-D314
22. Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS (2009) Nucleic Acids Res 37(Database issue):D483-D488
23. Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E (2008) Nucleic Acids Res 36(Database issue):D1009-D1014
24. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucleic Acids Res 28(1):235-242
25. Kouranov A, Xie L, de la Cruz J, Chen L, Westbrook J, Bourne PE, Berman HM (2006) Nucleic Acids Res 34(Database issue):D302-D305
26. Westbrook J, Feng Z, Chen L, Yang H, Berman HM (2003) Nucleic Acids Res 31(1):489-491
27. Ellrott K, Jaroszewski L, Li W, Wooley JC, Godzik A (2010) PLoS Comput Biol 6(6), e1000798
28. Park J, LaBaer J (2006) Curr Protoc Mol Biol. Chapter 3:Unit 3. 20:1-22
29. Blommel PG, Martin PA, Wrobel RL, Steffen E, Fox BG (2006) Protein Expr Purif47(2):562-570
30. Stols L, Gu M, Dieckman L, Raffen R, Collart FR, Donnelly MI (2002) Protein Expr Purif 25(1):8-15
31. Thao S, Zhao Q, Kimball T, Steffen E, Blommel PG, Riters M, Newman CS, Fox BG, Wrobel RL (2004) J Struct Funct Genomics 5(4):267-276
32. Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL (2004) Nat Meth 1(2):149-153
33. Clark KM, Fedoriw N, Robinson K, Connelly SM, Randles J, Malkowski MG, DeTitta GT, Dumont ME (2010) Protein Expr Purif71(2): 207-223
34. Chang Y, Mead D, Dhodda V, Brumm P, Fox BG (2009) Protein Sci 18(11):2316-2325
35. Donnelly MI, Zhou M, Millard CS, Clancy S, Stols L, Eschen-feldt WH, Collart FR, Joachimiak A (2006) Protein Expr Purif 47(2):446-454
36. Stols L, Zhou M, Eschenfeldt WH, Millard CS, Abdullah J, Collart FR, Kim Y, Donnelly MI (2007) Protein Expr Purif 53(2):396-403
37. Donnelly MI, Stevens PW, Stols L, Su SX, Tollaksen S, Giometti C, Joachimiak A (2001) Protein Expr Purif 22(3):422-429
38. Walsh JP, Cho C, Cohen WM (2005) Science 309(5743): 2002-2003
39. Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A (2009) Science 325(5947):1544-1549
40. Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC (2002) Proc Natl Acad Sci USA 99(18):11664-11669
41. Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Ramachandran N, Godwin AK, Marks J, Engstrom P, LaBaer J (2011) J Proteome Res 10(1):85-96
42. Anderson KS, Ramachandran N, Wong J, Raphael JV, Hains-worth E, Demirkan G, Cramer D, Aronzon D, Hodi FS, Harris L, Logvinenko T, LaBaer J (2008) J Proteome Res 7(4):1490-1499
43. Montor WR, Huang J, Hu Y, Hainsworth E, Lynch S, Kronish JW, Ordonez CL, Logvinenko T, Lory S, LaBaer J (2009) Infect Immun 77(11):4877-4886