메뉴 건너뛰기




Volumn 18, Issue 6, 2008, Pages 1343-1351

Development and evaluation of whole-genome oligonucleotide array for Acidithiobacillus ferrooxidans ATCC 23270

Author keywords

A. ferrooxidans ATCC 23270; quantification; sensitivity; specificity; whole genome oligonucleotide array(WGA)

Indexed keywords

AMPLIFICATION; DNA; GENES; NUCLEIC ACIDS; ORGANIC ACIDS; PROBES; STRAIN;

EID: 58649101879     PISSN: 10036326     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1003-6326(09)60007-8     Document Type: Article
Times cited : (4)

References (33)
  • 1
    • 17944400111 scopus 로고    scopus 로고
    • Rusticyanin gene expression of Acidithiobacillus ferrooxidans ATCC 33020 in sulfur- and in ferrous iron media [J]
    • YARZABAL A., DUQUESNE K., and BONNEFOY V. Rusticyanin gene expression of Acidithiobacillus ferrooxidans ATCC 33020 in sulfur- and in ferrous iron media [J]. Hydrometallurgy 71 1/2 (2003) 107-114
    • (2003) Hydrometallurgy , vol.71 , Issue.1-2 , pp. 107-114
    • YARZABAL, A.1    DUQUESNE, K.2    BONNEFOY, V.3
  • 2
    • 33644942303 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of Bacteria community composition in an acidic Sphagnum peat bog [J]
    • DEDYSH S.N., PANKRATOV T.A., BELOVA S.E., KULICHEVSKAYA S., and LIESACK W. Phylogenetic analysis and in situ identification of Bacteria community composition in an acidic Sphagnum peat bog [J]. Applied and Environmental Microbiology 72 3 (2006) 2110-2117
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.3 , pp. 2110-2117
    • DEDYSH, S.N.1    PANKRATOV, T.A.2    BELOVA, S.E.3    KULICHEVSKAYA, S.4    LIESACK, W.5
  • 3
    • 10644242777 scopus 로고    scopus 로고
    • Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications [J]
    • WU L.-y., THOMPSON D.K., LIU X.-d., FIELDS M.W., BAGWELL C.E., TIEDJE J.M., and ZHOU J.-z. Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications [J]. Environmental Science and Technology 38 24 (2004) 6775-6782
    • (2004) Environmental Science and Technology , vol.38 , Issue.24 , pp. 6775-6782
    • WU, L.-y.1    THOMPSON, D.K.2    LIU, X.-d.3    FIELDS, M.W.4    BAGWELL, C.E.5    TIEDJE, J.M.6    ZHOU, J.-z.7
  • 5
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements [J]
    • DRAGHICI S., KHATRI P., EKLUND A.C., and SZALLASI Z. Reliability and reproducibility issues in DNA microarray measurements [J]. Trends in Genetics 22 2 (2006) 101-109
    • (2006) Trends in Genetics , vol.22 , Issue.2 , pp. 101-109
    • DRAGHICI, S.1    KHATRI, P.2    EKLUND, A.C.3    SZALLASI, Z.4
  • 6
    • 0036624982 scopus 로고    scopus 로고
    • Challenges in applying microarrays to environmental studies [J]
    • ZHOU J.-z., and THOMPSON D.K. Challenges in applying microarrays to environmental studies [J]. Current Opinion in Biotechnology 13 3 (2002) 204-207
    • (2002) Current Opinion in Biotechnology , vol.13 , Issue.3 , pp. 204-207
    • ZHOU, J.-z.1    THOMPSON, D.K.2
  • 7
    • 0035656126 scopus 로고    scopus 로고
    • Development and evaluation of functional gene arrays for detection of selected genes in the environment [J]
    • WU L.-y., THOMPSON D.K., LI G.-s., HURT R.A., TIEDJE J.M., and ZHOU J.-z. Development and evaluation of functional gene arrays for detection of selected genes in the environment [J]. Applied and Environmental Microbiology 67 12 (2001) 5780-5790
    • (2001) Applied and Environmental Microbiology , vol.67 , Issue.12 , pp. 5780-5790
    • WU, L.-y.1    THOMPSON, D.K.2    LI, G.-s.3    HURT, R.A.4    TIEDJE, J.M.5    ZHOU, J.-z.6
  • 8
    • 3242773890 scopus 로고    scopus 로고
    • Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays [J]
    • RHEE S.K., LIU X.-d., WU L.-y., CHONG S.C., WAN X.-f., and ZHOU J.-z. Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays [J]. Applied and Environmental Microbiology 70 7 (2004) 4303-4317
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.7 , pp. 4303-4317
    • RHEE, S.K.1    LIU, X.-d.2    WU, L.-y.3    CHONG, S.C.4    WAN, X.-f.5    ZHOU, J.-z.6
  • 10
    • 10644247621 scopus 로고    scopus 로고
    • Applications of DNA tiling arrays for whole-genome analysis [J]
    • MOCKLER T.C., and ECKER J.R. Applications of DNA tiling arrays for whole-genome analysis [J]. Genomics 85 1 (2005) 1-15
    • (2005) Genomics , vol.85 , Issue.1 , pp. 1-15
    • MOCKLER, T.C.1    ECKER, J.R.2
  • 13
    • 0036299641 scopus 로고    scopus 로고
    • Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes [J]
    • FISHER M.A., PLIKAYTIS B.B., and SHINNICK T.M. Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes [J]. Journal of Bacteriology 184 14 (2002) 4025-4032
    • (2002) Journal of Bacteriology , vol.184 , Issue.14 , pp. 4025-4032
    • FISHER, M.A.1    PLIKAYTIS, B.B.2    SHINNICK, T.M.3
  • 15
    • 24944481659 scopus 로고    scopus 로고
    • Expression profiling of five different xenobiotics using a Caenorhabditis elegans whole genome microarray [J]
    • REICHERT K., and MENZEL R. Expression profiling of five different xenobiotics using a Caenorhabditis elegans whole genome microarray [J]. Chemosphere 61 2 (2005) 229-237
    • (2005) Chemosphere , vol.61 , Issue.2 , pp. 229-237
    • REICHERT, K.1    MENZEL, R.2
  • 17
    • 9344251110 scopus 로고    scopus 로고
    • A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction [J]
    • BARNETT M.J., TOMAN C.J., FISHER R.F., and LONG S.R. A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction [J]. PNAS 101 47 (2004) 16636-16641
    • (2004) PNAS , vol.101 , Issue.47 , pp. 16636-16641
    • BARNETT, M.J.1    TOMAN, C.J.2    FISHER, R.F.3    LONG, S.R.4
  • 18
    • 16644394132 scopus 로고    scopus 로고
    • Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray [J]
    • MARATHE R., GUAN Z., ANANDALAKSHMI R., ZHAO H.-y., and DINESH-KUMAR S.P. Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray [J]. Plant Molecular Biology 55 4 (2004) 501-520
    • (2004) Plant Molecular Biology , vol.55 , Issue.4 , pp. 501-520
    • MARATHE, R.1    GUAN, Z.2    ANANDALAKSHMI, R.3    ZHAO, H.-y.4    DINESH-KUMAR, S.P.5
  • 19
    • 33644828887 scopus 로고    scopus 로고
    • Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana [J]
    • HOLZER T.R., MCMASTER W.R., and FORNEY J.D. Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana [J]. Molecular and Biochemical Parasitology 146 2 (2006) 198-218
    • (2006) Molecular and Biochemical Parasitology , vol.146 , Issue.2 , pp. 198-218
    • HOLZER, T.R.1    MCMASTER, W.R.2    FORNEY, J.D.3
  • 20
    • 34248583559 scopus 로고    scopus 로고
    • Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stress [J]
    • SCHOLTEN J.C.M., CULLEY D.E., NIE L., MUNN K.J., CHOW L., BROCKMAN F.J., and ZHANG W. Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stress [J]. Biochemical and Biophysical Research Communications 358 2 (2007) 571-577
    • (2007) Biochemical and Biophysical Research Communications , vol.358 , Issue.2 , pp. 571-577
    • SCHOLTEN, J.C.M.1    CULLEY, D.E.2    NIE, L.3    MUNN, K.J.4    CHOW, L.5    BROCKMAN, F.J.6    ZHANG, W.7
  • 21
    • 1842844023 scopus 로고    scopus 로고
    • PRIMEGENS: A computer program for robust and efficient design of gene-specific targets on microarrays [J]
    • XU D., LI Gray G., WU L.-y., ZHOU J.-z., and XU Y. PRIMEGENS: A computer program for robust and efficient design of gene-specific targets on microarrays [J]. Bioinformatics 18 11 (2002) 1432-1437
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1432-1437
    • XU, D.1    LI Gray, G.2    WU, L.-y.3    ZHOU, J.-z.4    XU, Y.5
  • 22
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays [J]
    • KANE M.D., JATKOE T.A., STUMPT C.R., LIU J., THOMAS J.D., and MADORE S.J. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays [J]. Nucleic Acid Research 28 22 (2000) 4552-4557
    • (2000) Nucleic Acid Research , vol.28 , Issue.22 , pp. 4552-4557
    • KANE, M.D.1    JATKOE, T.A.2    STUMPT, C.R.3    LIU, J.4    THOMAS, J.D.5    MADORE, S.J.6
  • 25
    • 6944223834 scopus 로고    scopus 로고
    • DNA microarray technology in microbial ecology studies-principle, applications and current limitations [J]
    • LI E., and LIU W.T. DNA microarray technology in microbial ecology studies-principle, applications and current limitations [J]. Microbes and Environments 18 4 (2003) 175-187
    • (2003) Microbes and Environments , vol.18 , Issue.4 , pp. 175-187
    • LI, E.1    LIU, W.T.2
  • 26
    • 0028618275 scopus 로고
    • Direct fluorescent analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports [J]
    • ZHEN G., GUILFOYLE R.A., THIEL A.J., WANG R.-f., and SMITH L.M. Direct fluorescent analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports [J]. Nucleic Acids Research 22 24 (1994) 5456-5465
    • (1994) Nucleic Acids Research , vol.22 , Issue.24 , pp. 5456-5465
    • ZHEN, G.1    GUILFOYLE, R.A.2    THIEL, A.J.3    WANG, R.-f.4    SMITH, L.M.5
  • 28
    • 34250726464 scopus 로고    scopus 로고
    • Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems [J]
    • YIN H.-q., CAO L.-h., QIU G.-z., WANG D.-z., LAURIE K., ZHOU J.-z., DAI Z.-m., and LIU X.-d. Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems [J]. Journal of Microbiological Methods 70 1 (2007) 165-178
    • (2007) Journal of Microbiological Methods , vol.70 , Issue.1 , pp. 165-178
    • YIN, H.-q.1    CAO, L.-h.2    QIU, G.-z.3    WANG, D.-z.4    LAURIE, K.5    ZHOU, J.-z.6    DAI, Z.-m.7    LIU, X.-d.8
  • 30
    • 3242773890 scopus 로고    scopus 로고
    • Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays [J]
    • RHEE S.K., LIU X.-d., WU L.-y., CHONG S.C., WAN X.-f., and ZHOU J.-z. Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays [J]. Applied and Environmental Microbiology 70 7 (2004) 4303-4317
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.7 , pp. 4303-4317
    • RHEE, S.K.1    LIU, X.-d.2    WU, L.-y.3    CHONG, S.C.4    WAN, X.-f.5    ZHOU, J.-z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.