메뉴 건너뛰기




Volumn 30, Issue 16, 2011, Pages 3298-3308

Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish

Author keywords

piRNA; piRNA biogenesis; Piwi; Tdrd1; zebrafish

Indexed keywords

6 N,N' DIMETHYLARGININE; ARGININE; MOLECULAR SCAFFOLD; PIWI INTERACTING RNA; PIWI PROTEIN; PROTEIN; PROTEIN TDRD1; PROTEIN ZILI; PROTEIN ZIWI; UNCLASSIFIED DRUG; CHAPERONE; DIMETHYLARGININE; DRUG DERIVATIVE; RNA BINDING PROTEIN; SMALL INTERFERING RNA; TDRD1 PROTEIN, ZEBRAFISH; ZEBRAFISH PROTEIN; ZILI PROTEIN, ZEBRAFISH; ZIWI PROTEIN, ZEBRAFISH;

EID: 80053583080     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2011.228     Document Type: Article
Times cited : (61)

References (62)
  • 2
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA (2001) Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11: 1017-1027
    • (2001) Curr Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5    Gvozdev, V.A.6
  • 4
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 6
    • 0036828639 scopus 로고    scopus 로고
    • The Argonaute family: Tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
    • Carmell MA, Xuan Z, Zhang MQ, Hannon GJ (2002) The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev 16: 2733-2742
    • (2002) Genes Dev , vol.16 , pp. 2733-2742
    • Carmell, M.A.1    Xuan, Z.2    Zhang, M.Q.3    Hannon, G.J.4
  • 7
    • 14044268180 scopus 로고    scopus 로고
    • Drosophila valois encodes a divergent WD protein that is required for Vasa localization and Oskar protein accumulation
    • Cavey M, Hijal S, Zhang X, Suter B (2005) Drosophila valois encodes a divergent WD protein that is required for Vasa localization and Oskar protein accumulation. Development 132: 459-468
    • (2005) Development , vol.132 , pp. 459-468
    • Cavey, M.1    Hijal, S.2    Zhang, X.3    Suter, B.4
  • 10
    • 23344444863 scopus 로고    scopus 로고
    • Tudor domains bind symmetrical dimethylated arginines
    • Cote J, Richard S (2005) Tudor domains bind symmetrical dimethylated arginines. J Biol Chem 280: 28476-28483
    • (2005) J Biol Chem , vol.280 , pp. 28476-28483
    • Cote, J.1    Richard, S.2
  • 11
    • 0032443562 scopus 로고    scopus 로고
    • A novel class of evolutionarily conserved genes defined by Piwi are essential for stem cell self-renewal
    • Cox DN, Chao A, Baker J, Chang L, Qiao D, Lin H (1998) A novel class of evolutionarily conserved genes defined by Piwi are essential for stem cell self-renewal. Genes Dev 12: 3715-3727
    • (1998) Genes Dev , vol.12 , pp. 3715-3727
    • Cox, D.N.1    Chao, A.2    Baker, J.3    Chang, L.4    Qiao, D.5    Lin, H.6
  • 12
    • 0033966406 scopus 로고    scopus 로고
    • Piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells
    • Cox DN, Chao A, Lin H (2000) Piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development 127: 503-514
    • (2000) Development , vol.127 , pp. 503-514
    • Cox, D.N.1    Chao, A.2    Lin, H.3
  • 13
    • 0036083480 scopus 로고    scopus 로고
    • Miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis
    • Deng W, Lin H (2002) Miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. Dev Cell 2: 819-830
    • (2002) Dev Cell , vol.2 , pp. 819-830
    • Deng, W.1    Lin, H.2
  • 14
    • 0026659735 scopus 로고
    • Induction of germ cell formation by oskar
    • Ephrussi A, Lehmann R (1992) Induction of germ cell formation by oskar. Nature 358: 387-392
    • (1992) Nature , vol.358 , pp. 387-392
    • Ephrussi, A.1    Lehmann, R.2
  • 15
    • 62649142373 scopus 로고    scopus 로고
    • Structure and ligand binding of the extended Tudor domain of D. melanogaster Tudor-SN
    • Friberg A, Corsini L, Mourao A, Sattler M (2009) Structure and ligand binding of the extended Tudor domain of D. melanogaster Tudor-SN. J Mol Biol 387: 921-934
    • (2009) J Mol Biol , vol.387 , pp. 921-934
    • Friberg, A.1    Corsini, L.2    Mourao, A.3    Sattler, M.4
  • 16
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: An expanding universe
    • Ghildiyal M, Zamore PD (2009) Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 17
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA (2006) A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442: 199-202
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 19
    • 0034925616 scopus 로고    scopus 로고
    • Aubergine encodes a Drosophila polar granule component required for pole cell formation and related to eIF2C
    • Harris AN, Macdonald PM (2001) Aubergine encodes a Drosophila polar granule component required for pole cell formation and related to eIF2C. Development 128: 2823-2832
    • (2001) Development , vol.128 , pp. 2823-2832
    • Harris, A.N.1    MacDonald, P.M.2
  • 20
    • 34447291602 scopus 로고    scopus 로고
    • The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
    • Horwich MD, Li C, Matranga C, Vagin V, Farley G, Wang P, Zamore PD (2007) The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC. Curr Biol 17: 1265-1272
    • (2007) Curr Biol , vol.17 , pp. 1265-1272
    • Horwich, M.D.1    Li, C.2    Matranga, C.3    Vagin, V.4    Farley, G.5    Wang, P.6    Zamore, P.D.7
  • 21
    • 33845609223 scopus 로고    scopus 로고
    • Tudor-related proteins TDRD1/MTR-1, TDRD6 and TDRD7/TRAP: Domain composition, intracellular localization, and function in male germ cells in mice
    • Hosokawa M, Shoji M, Kitamura K, Tanaka T, Noce T, Chuma S, Nakatsuji N (2007) Tudor-related proteins TDRD1/MTR-1, TDRD6 and TDRD7/TRAP: domain composition, intracellular localization, and function in male germ cells in mice. Dev Biol 301: 38-52
    • (2007) Dev Biol , vol.301 , pp. 38-52
    • Hosokawa, M.1    Shoji, M.2    Kitamura, K.3    Tanaka, T.4    Noce, T.5    Chuma, S.6    Nakatsuji, N.7
  • 22
    • 54349089563 scopus 로고    scopus 로고
    • Zili is required for germ cell differentiation and meiosis in zebrafish
    • Houwing S, Berezikov E, Ketting RF (2008) Zili is required for germ cell differentiation and meiosis in zebrafish. EMBO J 27: 2702-2711
    • (2008) EMBO J , vol.27 , pp. 2702-2711
    • Houwing, S.1    Berezikov, E.2    Ketting, R.F.3
  • 24
    • 67649344774 scopus 로고    scopus 로고
    • The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes
    • Kawaoka S, Hayashi N, Suzuki Y, Abe H, Sugano S, Tomari Y, Shimada T, Katsuma S (2009) The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. RNA 15: 1258-1264
    • (2009) RNA , vol.15 , pp. 1258-1264
    • Kawaoka, S.1    Hayashi, N.2    Suzuki, Y.3    Abe, H.4    Sugano, S.5    Tomari, Y.6    Shimada, T.7    Katsuma, S.8
  • 25
    • 0036682990 scopus 로고    scopus 로고
    • RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E
    • Kennerdell JR, Yamaguchi S, Carthew RW (2002) RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E. Genes Dev 16: 1884-1889
    • (2002) Genes Dev , vol.16 , pp. 1884-1889
    • Kennerdell, J.R.1    Yamaguchi, S.2    Carthew, R.W.3
  • 27
    • 34247259831 scopus 로고    scopus 로고
    • Mouse Piwi-interacting RNAs are 20-O-methylated at their 30 termini
    • Kirino Y, Mourelatos Z (2007) Mouse Piwi-interacting RNAs are 20-O-methylated at their 30 termini. Nat Struct Mol Biol 14: 347-348
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 347-348
    • Kirino, Y.1    Mourelatos, Z.2
  • 30
    • 2942541260 scopus 로고    scopus 로고
    • Sexual dimorphic expression pattern of a splice variant of zebrafish vasa during gonadal development
    • Krovel AV, Olsen LC (2004) Sexual dimorphic expression pattern of a splice variant of zebrafish vasa during gonadal development. Dev Biol 271: 190-197
    • (2004) Dev Biol , vol.271 , pp. 190-197
    • Krovel, A.V.1    Olsen, L.C.2
  • 32
    • 70350568326 scopus 로고    scopus 로고
    • Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi
    • Lau NC, Ohsumi T, Borowsky M, Kingston RE, Blower MD (2009) Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi. EMBO J 28: 2945-2958
    • (2009) EMBO J , vol.28 , pp. 2945-2958
    • Lau, N.C.1    Ohsumi, T.2    Borowsky, M.3    Kingston, R.E.4    Blower, M.D.5
  • 35
    • 34249849029 scopus 로고    scopus 로고
    • Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster
    • Lim AK, Kai T (2007) Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster. Proc Natl Acad Sci USA 104: 6714-6719
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 6714-6719
    • Lim, A.K.1    Kai, T.2
  • 36
    • 68549128834 scopus 로고    scopus 로고
    • PiRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline
    • Lim AK, Tao L, Kai T (2009) piRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline. J Cell Biol 186: 333-342
    • (2009) J Cell Biol , vol.186 , pp. 333-342
    • Lim, A.K.1    Tao, L.2    Kai, T.3
  • 37
    • 77956271553 scopus 로고    scopus 로고
    • Structural basis for methylarginine-dependent recognition of Aubergine by Tudor
    • Liu H, Wang JY, Huang Y, Li Z, Gong W, Lehmann R, Xu RM (2010a) Structural basis for methylarginine-dependent recognition of Aubergine by Tudor. Genes Dev 24: 1876-1881
    • (2010) Genes Dev , vol.24 , pp. 1876-1881
    • Liu, H.1    Wang, J.Y.2    Huang, Y.3    Li, Z.4    Gong, W.5    Lehmann, R.6    Xu, R.M.7
  • 39
    • 79955366604 scopus 로고    scopus 로고
    • PAPI, a novel Tudor-domain protein, complexes with AGO3, Me31b and Tral in the nuage to silence transposition
    • Liu L, Qi H, Wang J, Lin H (2011) PAPI, a novel Tudor-domain protein, complexes with AGO3, Me31b and Tral in the nuage to silence transposition. Development 138: 1863-1873
    • (2011) Development , vol.138 , pp. 1863-1873
    • Liu, L.1    Qi, H.2    Wang, J.3    Lin, H.4
  • 43
    • 77957793321 scopus 로고    scopus 로고
    • An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila
    • Olivieri D, Sykora MM, Sachidanandam R, Mechtler K, Brennecke J (2010) An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. EMBO J 29: 3301-3317
    • (2010) EMBO J , vol.29 , pp. 3301-3317
    • Olivieri, D.1    Sykora, M.M.2    Sachidanandam, R.3    Mechtler, K.4    Brennecke, J.5
  • 44
    • 34249309547 scopus 로고    scopus 로고
    • Zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline
    • Pane A, Wehr K, Schupbach T (2007) zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline. Dev Cell 12: 851-862
    • (2007) Dev Cell , vol.12 , pp. 851-862
    • Pane, A.1    Wehr, K.2    Schupbach, T.3
  • 45
    • 77951288138 scopus 로고    scopus 로고
    • Repression of retroelements in Drosophila germline via piRNA pathway by the Tudor domain protein Tejas
    • Patil VS, Kai T (2010) Repression of retroelements in Drosophila germline via piRNA pathway by the Tudor domain protein Tejas. Curr Biol 20: 724-730
    • (2010) Curr Biol , vol.20 , pp. 724-730
    • Patil, V.S.1    Kai, T.2
  • 46
    • 0034643020 scopus 로고    scopus 로고
    • P granules in the germ cells of Caenorhabditis elegans adults are associated with clusters of nuclear pores and contain RNA
    • Pitt JN, Schisa JA, Priess JR (2000) P granules in the germ cells of Caenorhabditis elegans adults are associated with clusters of nuclear pores and contain RNA. Dev Biol 219: 315-333
    • (2000) Dev Biol , vol.219 , pp. 315-333
    • Pitt, J.N.1    Schisa, J.A.2    Priess, J.R.3
  • 47
    • 79952792594 scopus 로고    scopus 로고
    • The Yb body, a major site for Piwi-associated RNA biogenesis and a gateway for Piwi expression and transport to the nucleus in somatic cells
    • Qi H, Watanabe T, Ku HY, Liu N, Zhong M, Lin H (2011) The Yb body, a major site for Piwi-associated RNA biogenesis and a gateway for Piwi expression and transport to the nucleus in somatic cells. J Biol Chem 286: 3789-3797
    • (2011) J Biol Chem , vol.286 , pp. 3789-3797
    • Qi, H.1    Watanabe, T.2    Ku, H.Y.3    Liu, N.4    Zhong, M.5    Lin, H.6
  • 48
    • 67349141725 scopus 로고    scopus 로고
    • Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile
    • Reuter M, Chuma S, Tanaka T, Franz T, Stark A, Pillai RS (2009) Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile. Nat Struct Mol Biol 16: 639-646
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 639-646
    • Reuter, M.1    Chuma, S.2    Tanaka, T.3    Franz, T.4    Stark, A.5    Pillai, R.S.6
  • 51
    • 33747369856 scopus 로고    scopus 로고
    • Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
    • Saito K, Nishida KM, Mori T, Kawamura Y, Miyoshi K, Nagami T, Siomi H, Siomi MC (2006) Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev 20: 2214-2222
    • (2006) Genes Dev , vol.20 , pp. 2214-2222
    • Saito, K.1    Nishida, K.M.2    Mori, T.3    Kawamura, Y.4    Miyoshi, K.5    Nagami, T.6    Siomi, H.7    Siomi, M.C.8
  • 52
    • 34347378274 scopus 로고    scopus 로고
    • Pimet, the Drosophila homolog of HEN1, mediates 20-O-methylation of Piwiinteracting RNAs at their 30 ends
    • Saito K, Sakaguchi Y, Suzuki T, Siomi H, Siomi MC (2007) Pimet, the Drosophila homolog of HEN1, mediates 20-O-methylation of Piwiinteracting RNAs at their 30 ends. Genes Dev 21: 1603-1608
    • (2007) Genes Dev , vol.21 , pp. 1603-1608
    • Saito, K.1    Sakaguchi, Y.2    Suzuki, T.3    Siomi, H.4    Siomi, M.C.5
  • 54
    • 77950488501 scopus 로고    scopus 로고
    • How does the royal family of Tudor rule the PIWI-interacting RNA pathway?
    • Siomi MC, Mannen T, Siomi H (2010) How does the royal family of Tudor rule the PIWI-interacting RNA pathway? Genes Dev 24: 636-646
    • (2010) Genes Dev , vol.24 , pp. 636-646
    • Siomi, M.C.1    Mannen, T.2    Siomi, H.3
  • 55
    • 66149145780 scopus 로고    scopus 로고
    • The Yb protein defines a novel organelle and regulates male germline stem cell self-renewal in Drosophila melanogaster
    • Szakmary A, Reedy M, Qi H, Lin H (2009) The Yb protein defines a novel organelle and regulates male germline stem cell self-renewal in Drosophila melanogaster. J Cell Biol 185: 613-627
    • (2009) J Cell Biol , vol.185 , pp. 613-627
    • Szakmary, A.1    Reedy, M.2    Qi, H.3    Lin, H.4
  • 56
    • 24344456467 scopus 로고    scopus 로고
    • Tudor and its domains: Germ cell formation from a Tudor perspective
    • Thomson T, Lasko P (2005) Tudor and its domains: germ cell formation from a Tudor perspective. Cell Res 15: 281-291
    • (2005) Cell Res , vol.15 , pp. 281-291
    • Thomson, T.1    Lasko, P.2
  • 57
    • 79955497151 scopus 로고    scopus 로고
    • P granules extend the nuclear pore complex environment in the C. elegans germ line
    • Updike DL, Hachey SJ, Kreher J, Strome S (2011) P granules extend the nuclear pore complex environment in the C. elegans germ line. J Cell Biol 192: 939-948
    • (2011) J Cell Biol , vol.192 , pp. 939-948
    • Updike, D.L.1    Hachey, S.J.2    Kreher, J.3    Strome, S.4
  • 58
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD (2006) A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324
    • (2006) Science , vol.313 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5    Zamore, P.D.6
  • 60
    • 65049090424 scopus 로고    scopus 로고
    • Tdrd6 is required for spermiogenesis, chromatoid body architecture, and regulation of miRNA expression
    • Vasileva A, Tiedau D, Firooznia A, Muller-Reichert T, Jessberger R (2009) Tdrd6 is required for spermiogenesis, chromatoid body architecture, and regulation of miRNA expression. Curr Biol 19: 630-639
    • (2009) Curr Biol , vol.19 , pp. 630-639
    • Vasileva, A.1    Tiedau, D.2    Firooznia, A.3    Muller-Reichert, T.4    Jessberger, R.5
  • 61
    • 65049088735 scopus 로고    scopus 로고
    • Mili interacts with tudor domain-containing protein 1 in regulating spermatogenesis
    • Wang J, Saxe JP, Tanaka T, Chuma S, Lin H (2009) Mili interacts with tudor domain-containing protein 1 in regulating spermatogenesis. Curr Biol 19: 640-644
    • (2009) Curr Biol , vol.19 , pp. 640-644
    • Wang, J.1    Saxe, J.P.2    Tanaka, T.3    Chuma, S.4    Lin, H.5
  • 62
    • 79952375230 scopus 로고    scopus 로고
    • TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice
    • Yabuta Y, Ohta H, Abe T, Kurimoto K, Chuma S, Saitou M (2011) TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice. J Cell Biol 192: 781-795
    • (2011) J Cell Biol , vol.192 , pp. 781-795
    • Yabuta, Y.1    Ohta, H.2    Abe, T.3    Kurimoto, K.4    Chuma, S.5    Saitou, S.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.