-
2
-
-
70350482286
-
Evolution of biomolecular networks: lessons from metabolic and protein interactions
-
Yamada T, Bork P, (2009) Evolution of biomolecular networks: lessons from metabolic and protein interactions. Nat Rev Mol Cell Biol 10: 791-803.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 791-803
-
-
Yamada, T.1
Bork, P.2
-
3
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
-
4
-
-
34249041230
-
Exploring genetic interactions and networks with yeast
-
Boone C, Bussey H, Andrews BJ, (2007) Exploring genetic interactions and networks with yeast. Nat Rev Genet 8: 437-449.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 437-449
-
-
Boone, C.1
Bussey, H.2
Andrews, B.J.3
-
5
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, et al. (2010) The genetic landscape of a cell. Science 327: 425-431.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
-
6
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Durbin RM, Abecasis GR, Altshuler DL, Auton A, Brooks LD, et al. (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Durbin, R.M.1
Abecasis, G.R.2
Altshuler, D.L.3
Auton, A.4
Brooks, L.D.5
-
7
-
-
33846528944
-
Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies
-
Haarer B, Viggiano S, Hibbs MA, Troyanskaya OG, Amberg DC, (2007) Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies. Genes Dev 21: 148-159.
-
(2007)
Genes Dev
, vol.21
, pp. 148-159
-
-
Haarer, B.1
Viggiano, S.2
Hibbs, M.A.3
Troyanskaya, O.G.4
Amberg, D.C.5
-
8
-
-
0036177862
-
Transcription factor haploinsufficiency: when half a loaf is not enough
-
Seidman JG, Seidman C, (2002) Transcription factor haploinsufficiency: when half a loaf is not enough. J Clin Invest 109: 451-455.
-
(2002)
J Clin Invest
, vol.109
, pp. 451-455
-
-
Seidman, J.G.1
Seidman, C.2
-
9
-
-
2542432915
-
Haploinsufficiency for tumour suppressor genes: when you don't need to go all the way
-
Santarosa M, Ashworth A, (2004) Haploinsufficiency for tumour suppressor genes: when you don't need to go all the way. Biochim Biophys Acta 1654: 105-122.
-
(2004)
Biochim Biophys Acta
, vol.1654
, pp. 105-122
-
-
Santarosa, M.1
Ashworth, A.2
-
10
-
-
32644435114
-
Early aging-associated phenotypes in Bub3/Rae1 haploinsufficient mice
-
Baker DJ, Jeganathan KB, Malureanu L, Perez-Terzic C, Terzic A, et al. (2006) Early aging-associated phenotypes in Bub3/Rae1 haploinsufficient mice. J Cell Biol 172: 529-540.
-
(2006)
J Cell Biol
, vol.172
, pp. 529-540
-
-
Baker, D.J.1
Jeganathan, K.B.2
Malureanu, L.3
Perez-Terzic, C.4
Terzic, A.5
-
11
-
-
23744484194
-
Genetic analysis of Pten and Tsc2 functional interactions in the mouse reveals asymmetrical haploinsufficiency in tumor suppression
-
Ma L, Teruya-Feldstein J, Behrendt N, Chen Z, Noda T, et al. (2005) Genetic analysis of Pten and Tsc2 functional interactions in the mouse reveals asymmetrical haploinsufficiency in tumor suppression. Genes Dev 19: 1779-1786.
-
(2005)
Genes Dev
, vol.19
, pp. 1779-1786
-
-
Ma, L.1
Teruya-Feldstein, J.2
Behrendt, N.3
Chen, Z.4
Noda, T.5
-
12
-
-
33646578801
-
ASPP2 is a haploinsufficient tumor suppressor that cooperates with p53 to suppress tumor growth
-
Vives V, Su J, Zhong S, Ratnayaka I, Slee E, et al. (2006) ASPP2 is a haploinsufficient tumor suppressor that cooperates with p53 to suppress tumor growth. Genes Dev 20: 1262-1267.
-
(2006)
Genes Dev
, vol.20
, pp. 1262-1267
-
-
Vives, V.1
Su, J.2
Zhong, S.3
Ratnayaka, I.4
Slee, E.5
-
13
-
-
27944468750
-
Spore number control and breeding in Saccharomyces cerevisiae: a key role for a self-organizing system
-
Taxis C, Keller P, Kavagiou Z, Jensen LJ, Colombelli J, et al. (2005) Spore number control and breeding in Saccharomyces cerevisiae: a key role for a self-organizing system. J Cell Biol 171: 627-640.
-
(2005)
J Cell Biol
, vol.171
, pp. 627-640
-
-
Taxis, C.1
Keller, P.2
Kavagiou, Z.3
Jensen, L.J.4
Colombelli, J.5
-
14
-
-
0025008805
-
Purification of profilin from Saccharomyces cerevisiae and analysis of profilin-deficient cells
-
Haarer BK, Lillie SH, Adams AEM, Magdolen V, Bandlow W, et al. (1990) Purification of profilin from Saccharomyces cerevisiae and analysis of profilin-deficient cells. J Cell Biol 110: 105-114.
-
(1990)
J Cell Biol
, vol.110
, pp. 105-114
-
-
Haarer, B.K.1
Lillie, S.H.2
Adams, A.E.M.3
Magdolen, V.4
Bandlow, W.5
-
15
-
-
18744404214
-
Review: postchaperonin tubulin folding cofactors and their role in microtubule dynamics
-
Lopez-Fanarraga M, Avila J, Guasch A, Coll M, Zabala JC, (2001) Review: postchaperonin tubulin folding cofactors and their role in microtubule dynamics. J Struct Biol 135: 219-229.
-
(2001)
J Struct Biol
, vol.135
, pp. 219-229
-
-
Lopez-Fanarraga, M.1
Avila, J.2
Guasch, A.3
Coll, M.4
Zabala, J.C.5
-
16
-
-
0002366784
-
The genetics of the yeast cytoskeleton
-
In: Broach JR, Pringle JR, Jones EW, editors, New York, Cold Spring Harbor Laboratory Press
-
Botstein D, Amberg DC, Huffaker T, Mulholland J, Adams A, et al. (1997) The genetics of the yeast cytoskeleton. In: Broach JR, Pringle JR, Jones EW, editors. The Molecular and Cellular Biology of the Yeast Saccharomyces Cell Cycle and Cell Biology New York Cold Spring Harbor Laboratory Press pp. 1-90.
-
(1997)
The Molecular and Cellular Biology of the Yeast Saccharomyces Cell Cycle and Cell Biology
, pp. 1-90
-
-
Botstein, D.1
Amberg, D.C.2
Huffaker, T.3
Mulholland, J.4
Adams, A.5
-
17
-
-
34249748355
-
Stable preanaphase spindle positioning requires Bud6p and an apparent interaction between the spindle pole bodies and the neck
-
Haarer BK, Helfant AH, Nelson SA, Cooper JA, Amberg DC, (2007) Stable preanaphase spindle positioning requires Bud6p and an apparent interaction between the spindle pole bodies and the neck. Eukaryot Cell 6: 797-807.
-
(2007)
Eukaryot Cell
, vol.6
, pp. 797-807
-
-
Haarer, B.K.1
Helfant, A.H.2
Nelson, S.A.3
Cooper, J.A.4
Amberg, D.C.5
-
18
-
-
33750310112
-
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
-
Sealfon RS, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG, (2006) GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. BMC Bioinformatics 7: 443.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 443
-
-
Sealfon, R.S.1
Hibbs, M.A.2
Huttenhower, C.3
Myers, C.L.4
Troyanskaya, O.G.5
-
19
-
-
0013203966
-
FunSpec: a web-based cluster interpreter for yeast
-
Robinson MD, Grigull J, Mohammad N, Hughes TR, (2002) FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics 3: 35.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
20
-
-
7944239067
-
Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II
-
Hofmann WA, Stojiljkovic L, Fuchsova B, Vargas GM, Mavrommatis E, et al. (2004) Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II. Nat Cell Biol 6: 1094-1101.
-
(2004)
Nat Cell Biol
, vol.6
, pp. 1094-1101
-
-
Hofmann, W.A.1
Stojiljkovic, L.2
Fuchsova, B.3
Vargas, G.M.4
Mavrommatis, E.5
-
21
-
-
33645285000
-
Molecular functions of nuclear actin in transcription
-
Percipalle P, Visa N, (2006) Molecular functions of nuclear actin in transcription. J Cell Biol 172: 967-971.
-
(2006)
J Cell Biol
, vol.172
, pp. 967-971
-
-
Percipalle, P.1
Visa, N.2
-
22
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conjugates by the proteasome
-
Finley D, (2009) Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu Rev Biochem 78: 477-513.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
23
-
-
0030737501
-
Identification of the yeast 20S proteasome catalytic centers and subunit interactions required for active-site formation
-
Arendt CS, Hochstrasser M, (1997) Identification of the yeast 20S proteasome catalytic centers and subunit interactions required for active-site formation. Proc Natl Acad Sci U S A 94: 7156-7161.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 7156-7161
-
-
Arendt, C.S.1
Hochstrasser, M.2
-
24
-
-
0030774890
-
The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing
-
Heinemeyer W, Fischer M, Krimmer T, Stachon U, Wolf DH, (1997) The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing. J Biol Chem 272: 25200-25209.
-
(1997)
J Biol Chem
, vol.272
, pp. 25200-25209
-
-
Heinemeyer, W.1
Fischer, M.2
Krimmer, T.3
Stachon, U.4
Wolf, D.H.5
-
25
-
-
0030897031
-
Structure of 20S proteasome from yeast at 2.4 Å resolution
-
Groll M, Ditzel L, Lowe J, Stock D, Bochtler M, et al. (1997) Structure of 20S proteasome from yeast at 2.4 Å resolution. Nature 386: 463-471.
-
(1997)
Nature
, vol.386
, pp. 463-471
-
-
Groll, M.1
Ditzel, L.2
Lowe, J.3
Stock, D.4
Bochtler, M.5
-
26
-
-
54049107641
-
Some assembly required: dedicated chaperones in eukaryotic proteasome biogenesis
-
Kusmierczyk AR, Hochstrasser M, (2008) Some assembly required: dedicated chaperones in eukaryotic proteasome biogenesis. Biol Chem 389: 1143-1151.
-
(2008)
Biol Chem
, vol.389
, pp. 1143-1151
-
-
Kusmierczyk, A.R.1
Hochstrasser, M.2
-
27
-
-
43049146539
-
Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae
-
Ben-Aroya S, Coombes C, Kwok T, O'Donnell KA, Boeke JD, et al. (2008) Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae. Mol Cell 30: 248-258.
-
(2008)
Mol Cell
, vol.30
, pp. 248-258
-
-
Ben-Aroya, S.1
Coombes, C.2
Kwok, T.3
O'Donnell, K.A.4
Boeke, J.D.5
-
28
-
-
0029033981
-
Inhibition of proteasome activities and subunit-specific amino-terminal threonine modification by lactacystin
-
Fenteany G, Standaert RF, Lane WS, Choi S, Corey EJ, et al. (1995) Inhibition of proteasome activities and subunit-specific amino-terminal threonine modification by lactacystin. Science 268: 726-731.
-
(1995)
Science
, vol.268
, pp. 726-731
-
-
Fenteany, G.1
Standaert, R.F.2
Lane, W.S.3
Choi, S.4
Corey, E.J.5
-
29
-
-
0000870917
-
Selective inhibitors of the proteasome-dependent and vacuolar pathways of protein degradation in Saccharomyces cerevisiae
-
Lee DH, Goldberg AL, (1996) Selective inhibitors of the proteasome-dependent and vacuolar pathways of protein degradation in Saccharomyces cerevisiae. J Biol Chem 271: 27280-27284.
-
(1996)
J Biol Chem
, vol.271
, pp. 27280-27284
-
-
Lee, D.H.1
Goldberg, A.L.2
-
30
-
-
27744495040
-
A putative stimulatory role for activator turnover in gene expression
-
Lipford JR, Smith GT, Chi Y, Deshaies RJ, (2005) A putative stimulatory role for activator turnover in gene expression. Nature 438: 113-116.
-
(2005)
Nature
, vol.438
, pp. 113-116
-
-
Lipford, J.R.1
Smith, G.T.2
Chi, Y.3
Deshaies, R.J.4
-
31
-
-
78149313167
-
Combined chemical and genetic approach to inhibit proteolysis by the proteasome
-
Collins GA, Gomez TA, Deshaies RJ, Tansey WP, Combined chemical and genetic approach to inhibit proteolysis by the proteasome. Yeast 27: 965-974.
-
Yeast
, vol.27
, pp. 965-974
-
-
Collins, G.A.1
Gomez, T.A.2
Deshaies, R.J.3
Tansey, W.P.4
-
32
-
-
0030724422
-
Roles of ubiquitin-mediated proteolysis in cell cycle control
-
Hershko A, (1997) Roles of ubiquitin-mediated proteolysis in cell cycle control. Curr Opin Cell Biol 9: 788-799.
-
(1997)
Curr Opin Cell Biol
, vol.9
, pp. 788-799
-
-
Hershko, A.1
-
33
-
-
0033791447
-
Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes
-
Verma R, Chen S, Feldman R, Schieltz D, Yates J, et al. (2000) Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes. Mol Biol Cell 11: 3425-3439.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 3425-3439
-
-
Verma, R.1
Chen, S.2
Feldman, R.3
Schieltz, D.4
Yates, J.5
-
34
-
-
18844407538
-
Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast
-
Deutschbauer AM, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, et al. (2005) Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics 169: 1915-1925.
-
(2005)
Genetics
, vol.169
, pp. 1915-1925
-
-
Deutschbauer, A.M.1
Jaramillo, D.F.2
Proctor, M.3
Kumm, J.4
Hillenmeyer, M.E.5
-
35
-
-
0031170858
-
Visualization of prosomes (MCP-proteasomes), intermediate filament and actin networks by "instantaneous fixation" preserving the cytoskeleton
-
Arcangeletti C, Sutterlin R, Aebi U, De Conto F, Missorini S, et al. (1997) Visualization of prosomes (MCP-proteasomes), intermediate filament and actin networks by "instantaneous fixation" preserving the cytoskeleton. J Struct Biol 119: 35-58.
-
(1997)
J Struct Biol
, vol.119
, pp. 35-58
-
-
Arcangeletti, C.1
Sutterlin, R.2
Aebi, U.3
De Conto, F.4
Missorini, S.5
-
36
-
-
0028346790
-
Distribution of prosome proteins and their relationship with the cytoskeleton in oogenesis of Xenopus laevis
-
Ryabova LV, Virtanen I, Olink-Coux M, Scherrer K, Vassetzky SG, (1994) Distribution of prosome proteins and their relationship with the cytoskeleton in oogenesis of Xenopus laevis. Mol Reprod Dev 37: 195-203.
-
(1994)
Mol Reprod Dev
, vol.37
, pp. 195-203
-
-
Ryabova, L.V.1
Virtanen, I.2
Olink-Coux, M.3
Scherrer, K.4
Vassetzky, S.G.5
-
37
-
-
0033918858
-
Specific types of prosomes distribute differentially between intermediate and actin filaments in epithelial, fibroblastic and muscle cells
-
Arcangeletti C, De Conto F, Sutterlin R, Pinardi F, Missorini S, et al. (2000) Specific types of prosomes distribute differentially between intermediate and actin filaments in epithelial, fibroblastic and muscle cells. Eur J Cell Biol 79: 423-437.
-
(2000)
Eur J Cell Biol
, vol.79
, pp. 423-437
-
-
Arcangeletti, C.1
De Conto, F.2
Sutterlin, R.3
Pinardi, F.4
Missorini, S.5
-
38
-
-
0031586013
-
Prosome cytodistribution relative to desmin and actin filaments in dividing C2.7 myoblasts and during myotube formation in vitro
-
De Conto F, Missorini S, Arcangeletti C, Pinardi F, Montarras D, et al. (1997) Prosome cytodistribution relative to desmin and actin filaments in dividing C2.7 myoblasts and during myotube formation in vitro. Exp Cell Res 233: 99-117.
-
(1997)
Exp Cell Res
, vol.233
, pp. 99-117
-
-
De Conto, F.1
Missorini, S.2
Arcangeletti, C.3
Pinardi, F.4
Montarras, D.5
-
39
-
-
0032909639
-
Dynamic distribution and formation of a para-sarcomeric banding pattern of prosomes during myogenic differentiation of satellite cells in vitro
-
Foucrier J, Grand MC, De Conto F, Bassaglia Y, Geraud G, et al. (1999) Dynamic distribution and formation of a para-sarcomeric banding pattern of prosomes during myogenic differentiation of satellite cells in vitro. J Cell Sci 112 (Pt 7): 989-1001.
-
(1999)
J Cell Sci
, vol.112
, Issue.Pt 7
, pp. 989-1001
-
-
Foucrier, J.1
Grand, M.C.2
De Conto, F.3
Bassaglia, Y.4
Geraud, G.5
-
40
-
-
0035872241
-
Prosomes form sarcomere-like banding patterns in skeletal, cardiac, and smooth muscle cells
-
Foucrier J, Bassaglia Y, Grand MC, Rothen B, Perriard JC, et al. (2001) Prosomes form sarcomere-like banding patterns in skeletal, cardiac, and smooth muscle cells. Exp Cell Res 266: 193-200.
-
(2001)
Exp Cell Res
, vol.266
, pp. 193-200
-
-
Foucrier, J.1
Bassaglia, Y.2
Grand, M.C.3
Rothen, B.4
Perriard, J.C.5
-
41
-
-
40949117574
-
A multimeric assembly factor controls the formation of alternative 20S proteasomes
-
Kusmierczyk AR, Kunjappu MJ, Funakoshi M, Hochstrasser M, (2008) A multimeric assembly factor controls the formation of alternative 20S proteasomes. Nat Struct Mol Biol 15: 237-244.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 237-244
-
-
Kusmierczyk, A.R.1
Kunjappu, M.J.2
Funakoshi, M.3
Hochstrasser, M.4
-
42
-
-
77953291910
-
Dissection of the assembly pathway of the proteasome lid in Saccharomyces cerevisiae
-
Fukunaga K, Kudo T, Toh-e A, Tanaka K, Saeki Y, (2010) Dissection of the assembly pathway of the proteasome lid in Saccharomyces cerevisiae. Biochem Biophys Res Commun 396: 1048-1053.
-
(2010)
Biochem Biophys Res Commun
, vol.396
, pp. 1048-1053
-
-
Fukunaga, K.1
Kudo, T.2
Toh-e, A.3
Tanaka, K.4
Saeki, Y.5
-
43
-
-
0031772419
-
Three-dimensional imaging of the yeast actin-cytoskeleton through the budding cell-cycle
-
Amberg DC, (1998) Three-dimensional imaging of the yeast actin-cytoskeleton through the budding cell-cycle. Molec Biol Cell 9: 3259-3262.
-
(1998)
Molec Biol Cell
, vol.9
, pp. 3259-3262
-
-
Amberg, D.C.1
-
44
-
-
34547123362
-
Biochemical and genetic analyses provide insight into the structural and mechanistic properties of actin filament disassembly by the Aip1p-cofilin complex in Saccharomyces cerevisiae
-
Clark MG, Amberg DC, (2007) Biochemical and genetic analyses provide insight into the structural and mechanistic properties of actin filament disassembly by the Aip1p-cofilin complex in Saccharomyces cerevisiae. Genetics 176: 1527-1539.
-
(2007)
Genetics
, vol.176
, pp. 1527-1539
-
-
Clark, M.G.1
Amberg, D.C.2
-
45
-
-
0036276195
-
Purification of yeast actin and actin-associated proteins
-
In: Guthrie C, Fink GR, editors, London, Academin Press
-
Goode BL, (2002) Purification of yeast actin and actin-associated proteins. In: Guthrie C, Fink GR, editors. Methods in Enzymology; Guide to Yeast Genetics and Molecular Biology, Part C London Academin Press pp. 433-441.
-
(2002)
Methods in Enzymology; Guide to Yeast Genetics and Molecular Biology, Part C
, pp. 433-441
-
-
Goode, B.L.1
-
47
-
-
0031927996
-
26S proteasome structure revealed by three-dimensional electron microscopy
-
Walz J, Erdmann A, Kania M, Typke D, Koster AJ, et al. (1998) 26S proteasome structure revealed by three-dimensional electron microscopy. J Struct Biol 121: 19-29.
-
(1998)
J Struct Biol
, vol.121
, pp. 19-29
-
-
Walz, J.1
Erdmann, A.2
Kania, M.3
Typke, D.4
Koster, A.J.5
|