-
1
-
-
42149148977
-
Marine chemosynthetic symbioses
-
In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH and Stackebrandt E, Third Edition. A Handbook on the Biology of Bacteria. Springer: New York
-
Cavanaugh CM, McKiness ZP, Newton ILG, Stewart FJ. (2006). Marine chemosynthetic symbioses. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH and Stackebrandt E (eds). The Prokaryotes. Third Edition. A Handbook on the Biology of Bacteria. Springer: New York. pp 475-507.
-
(2006)
The Prokaryotes
, pp. 475-507
-
-
Cavanaugh, C.M.1
McKiness, Z.P.2
Newton, I.L.G.3
Stewart, F.J.4
-
2
-
-
2642664520
-
Evolutionary relationships of deep-sea hydrothermal vent and cold-water seep clams (Bivalvia: Vesicomyidae): Results from the mitochondrial cytochrome oxidase subunit I
-
doi:10.1007/s002270050234
-
Peek A, Gustafson R, Lutz R, Vrijenhoek R. Evolutionary relationships of deep-sea hydrothermal vent and cold-water seep clams (Bivalvia: Vesicomyidae): Results from the mitochondrial cytochrome oxidase subunit I. Mar Biol 1997; 130:151-161. doi:10.1007/s002270050234
-
(1997)
Mar Biol
, vol.130
, pp. 151-161
-
-
Peek, A.1
Gustafson, R.2
Lutz, R.3
Vrijenhoek, R.4
-
3
-
-
0000437315
-
The giant white clam from the Galapagos Rift, Calyptogena magnifica n. sp. (Bivalvia; Vesicomyidae)
-
Boss KJ, Turner RD. The giant white clam from the Galapagos Rift, Calyptogena magnifica n. sp. (Bivalvia; Vesicomyidae). Malacologia 1980; 20:161-194.
-
(1980)
Malacologia
, vol.20
, pp. 161-194
-
-
Boss, K.J.1
Turner, R.D.2
-
4
-
-
0020700360
-
Symbiotic Chemoautotrophic Bacteria in Marine-Invertebrates from Sulfide-Rich Habitats
-
doi:10.1038/302058a0
-
Cavanaugh CM. Symbiotic Chemoautotrophic Bacteria in Marine-Invertebrates from Sulfide-Rich Habitats. Nature 1983; 302:58-61. doi:10.1038/302058a0
-
(1983)
Nature
, vol.302
, pp. 58-61
-
-
Cavanaugh, C.M.1
-
5
-
-
0006787166
-
Primary Production in Deep-Sea Hydrothermal Vent Organisms - Roles of Sulfide-Oxidizing Bacteria
-
doi:10.1016/0968-0004(82)90088-3
-
Felbeck H, Somero GN. Primary Production in Deep-Sea Hydrothermal Vent Organisms - Roles of Sulfide-Oxidizing Bacteria. Trends Biochem Sci 1982; 7:201-204. doi:10.1016/0968-0004(82)90088-3
-
(1982)
Trends Biochem Sci
, vol.7
, pp. 201-204
-
-
Felbeck, H.1
Somero, G.N.2
-
6
-
-
0024234192
-
Variations in the hydrothermalvent clam Calyptogena magnifica at the Rose Garden vent on the Galapagos Spreading Center
-
doi:10.1016/0198-0149(88)90051-9
-
Fisher CR, Childress JJ, Arp AJ, Brooks JM, Distel DL, Dugan JA, Felbeck H, Fritz LW, Hessler RR, Johnson KS, et al. Variations in the hydrothermalvent clam Calyptogena magnifica at the Rose Garden vent on the Galapagos Spreading Center. Deep-Sea Res 1988; 35:1811-1831. doi:10.1016/0198-0149(88)90051-9
-
(1988)
Deep-Sea Res
, vol.35
, pp. 1811-1831
-
-
Fisher, C.R.1
Childress, J.J.2
Arp, A.J.3
Brooks, J.M.4
Distel, D.L.5
Dugan, J.A.6
Felbeck, H.7
Fritz, L.W.8
Hessler, R.R.9
Johnson, K.S.10
-
7
-
-
34247876090
-
Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii
-
PubMed doi:10.1016/j.cub.2007.04.039
-
Kuwahara H, Yoshida T, Takaki Y, Shimamura S, Nishi S, Harada M, Matsuyama K, Takishita K, Kawato M, Uematsu K, et al. Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii. Curr Biol 2007; 17:881-886. PubMed doi:10.1016/j.cub.2007.04.039
-
(2007)
Curr Biol
, vol.17
, pp. 881-886
-
-
Kuwahara, H.1
Yoshida, T.2
Takaki, Y.3
Shimamura, S.4
Nishi, S.5
Harada, M.6
Matsuyama, K.7
Takishita, K.8
Kawato, M.9
Uematsu, K.10
-
8
-
-
60549115337
-
Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts
-
PubMed doi:10.1186/1471-2164-9-585
-
Newton IL, Girguis PR, Cavanaugh CM. Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts. BMC Genomics 2008; 9:585. PubMed doi:10.1186/1471-2164-9-585
-
(2008)
BMC Genomics
, vol.9
, pp. 585
-
-
Newton, I.L.1
Girguis, P.R.2
Cavanaugh, C.M.3
-
9
-
-
33847118118
-
The Calyptogena magnifica chemoautotrophic symbiont genome
-
PubMed doi:10.1126/science.1138438
-
Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, et al. The Calyptogena magnifica chemoautotrophic symbiont genome. Science 2007; 315:998-1000. PubMed doi:10.1126/science.1138438
-
(2007)
Science
, vol.315
, pp. 998-1000
-
-
Newton, I.L.1
Woyke, T.2
Auchtung, T.A.3
Dilly, G.F.4
Dutton, R.J.5
Fisher, M.C.6
Fontanez, K.M.7
Lau, E.8
Stewart, F.J.9
Richardson, P.M.10
-
10
-
-
0037392945
-
Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica
-
PubMed doi:10.1128/AEM.69.4.2058-2064.2003
-
Hurtado LA, Mateos M, Lutz RA, Vrijenhoek RC. Coupling of bacterial endosymbiont and host mitochondrial genomes in the hydrothermal vent clam Calyptogena magnifica. Appl Environ Microbiol 2003; 69:2058-2064. PubMed doi:10.1128/AEM.69.4.2058-2064.2003
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2058-2064
-
-
Hurtado, L.A.1
Mateos, M.2
Lutz, R.A.3
Vrijenhoek, R.C.4
-
11
-
-
0032544040
-
Cospeciation of chemoautotrophic bacteria and deep sea clams
-
PubMed doi:10.1073/pnas.95.17.9962
-
Peek AS, Feldman RA, Lutz RA, Vrijenhoek RC. Cospeciation of chemoautotrophic bacteria and deep sea clams. Proc Natl Acad Sci USA 1998; 95:9962-9966. PubMed doi:10.1073/pnas.95.17.9962
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 9962-9966
-
-
Peek, A.S.1
Feldman, R.A.2
Lutz, R.A.3
Vrijenhoek, R.C.4
-
12
-
-
40849142148
-
Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis
-
PubMed doi:10.1093/molbev/msn010
-
Stewart FJ, Young CR, Cavanaugh CM. Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis. Mol Biol Evol 2008; 25:673-687. PubMed doi:10.1093/molbev/msn010
-
(2008)
Mol Biol Evol
, vol.25
, pp. 673-687
-
-
Stewart, F.J.1
Young, C.R.2
Cavanaugh, C.M.3
-
13
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
PubMed doi:10.1038/75556
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000; 25:25-29. PubMed doi:10.1038/75556
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
14
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
PubMed doi:10.1093/nar/27.23.4636
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 1999; 27:4636-4641. PubMed doi:10.1093/nar/27.23.4636
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
15
-
-
11244328060
-
The Pathway Tools software
-
PubMed
-
Karp PD, Paley S, Romero P. The Pathway Tools software. Bioinformatics 2002; 18(Suppl 1):S225-S232. PubMed
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Karp, P.D.1
Paley, S.2
Romero, P.3
-
16
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
PubMed doi:10.1093/nar/gkm900
-
Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, et al. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res 2007; 36:D623-D631. PubMed doi:10.1093/nar/gkm900
-
(2007)
Nucleic Acids Res
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
-
17
-
-
27444444566
-
For better or worse: Genomic consequences of intracellular mutualism and parasitism
-
PubMed doi:10.1016/j.gde.2005.09.013
-
Wernegreen JJ. For better or worse: genomic consequences of intracellular mutualism and parasitism. Curr Opin Genet Dev 2005; 15:572-583.PubMed doi:10.1016/j.gde.2005.09.013
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 572-583
-
-
Wernegreen, J.J.1
-
18
-
-
0037007113
-
Extreme genome reduction in Buchnera spp.: Toward the minimal genome needed for symbiotic life
-
PubMed doi:10.1073/pnas.062067299
-
Gil R, Sabater-Munoz B, Latorre A, Silva FJ, Moya A. Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life. Proc Natl Acad Sci USA 2002; 99:4454-4458. PubMed doi:10.1073/pnas.062067299
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4454-4458
-
-
Gil, R.1
Sabater-Munoz, B.2
Latorre, A.3
Silva, F.J.4
Moya, A.5
-
19
-
-
0032516147
-
Gene transfer to the nucleus and the evolution of chloroplasts
-
PubMed doi:10.1038/30234
-
Martin W, Stoebe B, Goremykin V, Hapsmann S, Hasegawa M, Kowallik KV. Gene transfer to the nucleus and the evolution of chloroplasts. Nature 1998; 393:162-165. PubMed doi:10.1038/30234
-
(1998)
Nature
, vol.393
, pp. 162-165
-
-
Martin, W.1
Stoebe, B.2
Goremykin, V.3
Hapsmann, S.4
Hasegawa, M.5
Kowallik, K.V.6
-
20
-
-
33845505324
-
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2
-
PubMed doi:10.1371/journal.pbio.0040383
-
Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, DavisCR, et al. The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol 2006; 4:e383. PubMed doi:10.1371/journal.pbio.0040383
-
(2006)
PLoS Biol
, vol.e383
, pp. 4
-
-
Scott, K.M.1
Sievert, S.M.2
Abril, F.N.3
Ball, L.A.4
Barrett, C.J.5
Blake, R.A.6
Boller, A.J.7
Chain, P.S.8
Clark, J.A.9
Davis, C.R.10
-
21
-
-
0027218069
-
Pyrophosphate-dependent phosphofructo-1-kinase complements fructose 1,6-bisphosphatase but not phosphofructokinase deficiency in Escherichia coli
-
PubMed
-
Kemp RG, Tripathi RL. Pyrophosphate-dependent phosphofructo-1-kinase complements fructose 1,6-bisphosphatase but not phosphofructokinase deficiency in Escherichia coli. J Bacteriol 1993; 175:5723-5724. PubMed
-
(1993)
J Bacteriol
, vol.175
, pp. 5723-5724
-
-
Kemp, R.G.1
Tripathi, R.L.2
-
22
-
-
0025217043
-
Comparative structure, function and regulation of isocitrate lyase, an important assimilatory enzyme
-
PubMed doi:10.1016/0305-0491(90)90002-B
-
Vanni P, Giachetti E, Pinzauti G, McFadden BA. Comparative structure, function and regulation of isocitrate lyase, an important assimilatory enzyme. Comp Biochem Physiol B 1990; 95:431-458. PubMed doi:10.1016/0305-0491(90)90002-B
-
(1990)
Comp Biochem Physiol B
, vol.95
, pp. 431-458
-
-
Vanni, P.1
Giachetti, E.2
Pinzauti, G.3
McFadden, B.A.4
-
23
-
-
13444262374
-
EcoCyc: A comprehensive database resource for Escherichia coli
-
doi:10.1093/nar/gki108
-
Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Res 2004; 33:D334-D337. doi:10.1093/nar/gki108
-
(2004)
Nucleic Acids Res
, vol.33
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
Paulsen, I.T.6
Peralta-Gil, M.7
Karp, P.D.8
|