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Volumn 12, Issue , 2011, Pages

Discovering biological connections between experimental conditions based on common patterns of differential gene expression

Author keywords

[No Author keywords available]

Indexed keywords

AFFYMETRIX MICROARRAYS; BIOLOGICAL CONDITIONS; COMPUTATIONAL APPROACH; DIFFERENTIAL EXPRESSIONS; DIFFERENTIAL GENE EXPRESSIONS; EXPERIMENTAL CONDITIONS; GENE EXPRESSION DATA; GENE EXPRESSION SIGNATURES;

EID: 80053378461     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-381     Document Type: Article
Times cited : (20)

References (63)
  • 2
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease
    • 10.1126/science.1132939, 17008526
    • Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, Wrobel MJ, Lerner J, Brunet JP, Subramanian A, Ross KN, et al. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 2006, 313(5795):1929-1935. 10.1126/science.1132939, 17008526.
    • (2006) Science , vol.313 , Issue.5795 , pp. 1929-1935
    • Lamb, J.1    Crawford, E.D.2    Peck, D.3    Modell, J.W.4    Blat, I.C.5    Wrobel, M.J.6    Lerner, J.7    Brunet, J.P.8    Subramanian, A.9    Ross, K.N.10
  • 3
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • 10.1126/science.286.5439.531, 10521349
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999, 286(5439):531-537. 10.1126/science.286.5439.531, 10521349.
    • (1999) Science , vol.286 , Issue.5439 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6    Coller, H.7    Loh, M.L.8    Downing, J.R.9    Caligiuri, M.A.10
  • 4
    • 33847749502 scopus 로고    scopus 로고
    • Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer
    • 10.1038/nm1556, 17334370
    • Spira A, Beane JE, Shah V, Steiling K, Liu G, Schembri F, Gilman S, Dumas YM, Calner P, Sebastiani P, et al. Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer. Nat Med 2007, 13(3):361-366. 10.1038/nm1556, 17334370.
    • (2007) Nat Med , vol.13 , Issue.3 , pp. 361-366
    • Spira, A.1    Beane, J.E.2    Shah, V.3    Steiling, K.4    Liu, G.5    Schembri, F.6    Gilman, S.7    Dumas, Y.M.8    Calner, P.9    Sebastiani, P.10
  • 6
    • 75649084233 scopus 로고    scopus 로고
    • A gene expression signature of CD34+ cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib
    • 10.1182/blood-2009-03-210732, 2808155, 19837975
    • McWeeney SK, Pemberton LC, Loriaux MM, Vartanian K, Willis SG, Yochum G, Wilmot B, Turpaz Y, Pillai R, Druker BJ, et al. A gene expression signature of CD34+ cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib. Blood 2010, 115(2):315-325. 10.1182/blood-2009-03-210732, 2808155, 19837975.
    • (2010) Blood , vol.115 , Issue.2 , pp. 315-325
    • McWeeney, S.K.1    Pemberton, L.C.2    Loriaux, M.M.3    Vartanian, K.4    Willis, S.G.5    Yochum, G.6    Wilmot, B.7    Turpaz, Y.8    Pillai, R.9    Druker, B.J.10
  • 7
    • 33751384465 scopus 로고    scopus 로고
    • GATHER: a systems approach to interpreting genomic signatures
    • 10.1093/bioinformatics/btl483, 17000751
    • Chang JT, Nevins JR. GATHER: a systems approach to interpreting genomic signatures. Bioinformatics 2006, 22(23):2926-2933. 10.1093/bioinformatics/btl483, 17000751.
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2926-2933
    • Chang, J.T.1    Nevins, J.R.2
  • 10
    • 35748950713 scopus 로고    scopus 로고
    • Exploring the functional landscape of gene expression: directed search of large microarray compendia
    • 10.1093/bioinformatics/btm403, 17724061
    • Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG. Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinformatics 2007, 23(20):2692-2699. 10.1093/bioinformatics/btm403, 17724061.
    • (2007) Bioinformatics , vol.23 , Issue.20 , pp. 2692-2699
    • Hibbs, M.A.1    Hess, D.C.2    Myers, C.L.3    Huttenhower, C.4    Li, K.5    Troyanskaya, O.G.6
  • 11
    • 36549027355 scopus 로고    scopus 로고
    • GSEA-P: a desktop application for Gene Set Enrichment Analysis
    • 10.1093/bioinformatics/btm369, 17644558
    • Subramanian A, Kuehn H, Gould J, Tamayo P, Mesirov JP. GSEA-P: a desktop application for Gene Set Enrichment Analysis. Bioinformatics 2007, 23(23):3251-3253. 10.1093/bioinformatics/btm369, 17644558.
    • (2007) Bioinformatics , vol.23 , Issue.23 , pp. 3251-3253
    • Subramanian, A.1    Kuehn, H.2    Gould, J.3    Tamayo, P.4    Mesirov, J.P.5
  • 12
    • 62349088493 scopus 로고    scopus 로고
    • GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed
    • 10.1186/1471-2105-9-548, 2629779, 19094235
    • Chen R, Mallelwar R, Thosar A, Venkatasubrahmanyam S, Butte AJ. GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed. BMC Bioinformatics 2008, 9:548. 10.1186/1471-2105-9-548, 2629779, 19094235.
    • (2008) BMC Bioinformatics , vol.9 , pp. 548
    • Chen, R.1    Mallelwar, R.2    Thosar, A.3    Venkatasubrahmanyam, S.4    Butte, A.J.5
  • 13
    • 70349685075 scopus 로고    scopus 로고
    • GEM-TREND: a web tool for gene expression data mining toward relevant network discovery
    • 10.1186/1471-2164-10-411, 2748096, 19728865
    • Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y. GEM-TREND: a web tool for gene expression data mining toward relevant network discovery. BMC Genomics 2009, 10:411. 10.1186/1471-2164-10-411, 2748096, 19728865.
    • (2009) BMC Genomics , vol.10 , pp. 411
    • Feng, C.1    Araki, M.2    Kunimoto, R.3    Tamon, A.4    Makiguchi, H.5    Niijima, S.6    Tsujimoto, G.7    Okuno, Y.8
  • 15
    • 74049151165 scopus 로고    scopus 로고
    • Web-based interrogation of gene expression signatures using EXALT
    • 10.1186/1471-2105-10-420, 2799423, 20003458
    • Wu J, Qiu Q, Xie L, Fullerton J, Yu J, Shyr Y, George AL, Yi Y. Web-based interrogation of gene expression signatures using EXALT. BMC Bioinformatics 2009, 10:420. 10.1186/1471-2105-10-420, 2799423, 20003458.
    • (2009) BMC Bioinformatics , vol.10 , pp. 420
    • Wu, J.1    Qiu, Q.2    Xie, L.3    Fullerton, J.4    Yu, J.5    Shyr, Y.6    George, A.L.7    Yi, Y.8
  • 16
    • 79953158644 scopus 로고    scopus 로고
    • Discovery of molecular mechanisms of traditional Chinese medicinal formula Si-Wu-Tang using gene expression microarray and connectivity map
    • Wen Z, Wang Z, Wang S, Ravula R, Yang L, Xu J, Wang C, Zuo Z, Chow MS, Shi L, et al. Discovery of molecular mechanisms of traditional Chinese medicinal formula Si-Wu-Tang using gene expression microarray and connectivity map. PLoS One 6(3):e18278.
    • PLoS One , vol.6 , Issue.3
    • Wen, Z.1    Wang, Z.2    Wang, S.3    Ravula, R.4    Yang, L.5    Xu, J.6    Wang, C.7    Zuo, Z.8    Chow, M.S.9    Shi, L.10
  • 18
    • 79251628180 scopus 로고    scopus 로고
    • Expression-based in silico screening of candidate therapeutic compounds for lung adenocarcinoma
    • Wang G, Ye Y, Yang X, Liao H, Zhao C, Liang S. Expression-based in silico screening of candidate therapeutic compounds for lung adenocarcinoma. PLoS One 6(1):e14573.
    • PLoS One , vol.6 , Issue.1
    • Wang, G.1    Ye, Y.2    Yang, X.3    Liao, H.4    Zhao, C.5    Liang, S.6
  • 20
    • 1242338758 scopus 로고    scopus 로고
    • Selective estrogen receptor modulators: discrimination of agonistic versus antagonistic activities by gene expression profiling in breast cancer cells
    • 10.1158/0008-5472.CAN-03-3326, 14973112
    • Frasor J, Stossi F, Danes JM, Komm B, Lyttle CR, Katzenellenbogen BS. Selective estrogen receptor modulators: discrimination of agonistic versus antagonistic activities by gene expression profiling in breast cancer cells. Cancer Res 2004, 64(4):1522-1533. 10.1158/0008-5472.CAN-03-3326, 14973112.
    • (2004) Cancer Res , vol.64 , Issue.4 , pp. 1522-1533
    • Frasor, J.1    Stossi, F.2    Danes, J.M.3    Komm, B.4    Lyttle, C.R.5    Katzenellenbogen, B.S.6
  • 21
    • 43049090857 scopus 로고    scopus 로고
    • Estrogen Receptors alpha and beta as determinants of gene expression: influence of ligand, dose, and chromatin binding
    • 10.1210/me.2007-0356, 2366177, 18258689
    • Chang EC, Charn TH, Park SH, Helferich WG, Komm B, Katzenellenbogen JA, Katzenellenbogen BS. Estrogen Receptors alpha and beta as determinants of gene expression: influence of ligand, dose, and chromatin binding. Mol Endocrinol 2008, 22(5):1032-1043. 10.1210/me.2007-0356, 2366177, 18258689.
    • (2008) Mol Endocrinol , vol.22 , Issue.5 , pp. 1032-1043
    • Chang, E.C.1    Charn, T.H.2    Park, S.H.3    Helferich, W.G.4    Komm, B.5    Katzenellenbogen, J.A.6    Katzenellenbogen, B.S.7
  • 22
    • 49649111492 scopus 로고    scopus 로고
    • Genome-wide analysis of aromatase inhibitor-resistant, tamoxifen-resistant, and long-term estrogen-deprived cells reveals a role for estrogen receptor
    • 10.1158/0008-5472.CAN-08-0303, 18559539
    • Masri S, Phung S, Wang X, Wu X, Yuan YC, Wagman L, Chen S. Genome-wide analysis of aromatase inhibitor-resistant, tamoxifen-resistant, and long-term estrogen-deprived cells reveals a role for estrogen receptor. Cancer Res 2008, 68(12):4910-4918. 10.1158/0008-5472.CAN-08-0303, 18559539.
    • (2008) Cancer Res , vol.68 , Issue.12 , pp. 4910-4918
    • Masri, S.1    Phung, S.2    Wang, X.3    Wu, X.4    Yuan, Y.C.5    Wagman, L.6    Chen, S.7
  • 23
    • 34547114483 scopus 로고    scopus 로고
    • Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis
    • 10.1210/en.2006-1692, 17510236
    • Burney RO, Talbi S, Hamilton AE, Vo KC, Nyegaard M, Nezhat CR, Lessey BA, Giudice LC. Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis. Endocrinology 2007, 148(8):3814-3826. 10.1210/en.2006-1692, 17510236.
    • (2007) Endocrinology , vol.148 , Issue.8 , pp. 3814-3826
    • Burney, R.O.1    Talbi, S.2    Hamilton, A.E.3    Vo, K.C.4    Nyegaard, M.5    Nezhat, C.R.6    Lessey, B.A.7    Giudice, L.C.8
  • 24
    • 32644434143 scopus 로고    scopus 로고
    • Molecular phenotyping of human endometrium distinguishes menstrual cycle phases and underlying biological processes in normo-ovulatory women
    • Talbi S, Hamilton AE, Vo KC, Tulac S, Overgaard MT, Dosiou C, Le Shay N, Nezhat CN, Kempson R, Lessey BA, et al. Molecular phenotyping of human endometrium distinguishes menstrual cycle phases and underlying biological processes in normo-ovulatory women. Endocrinology 2006, 147(3):1097-1121.
    • (2006) Endocrinology , vol.147 , Issue.3 , pp. 1097-1121
    • Talbi, S.1    Hamilton, A.E.2    Vo, K.C.3    Tulac, S.4    Overgaard, M.T.5    Dosiou, C.6    Le Shay, N.7    Nezhat, C.N.8    Kempson, R.9    Lessey, B.A.10
  • 25
    • 0033594491 scopus 로고    scopus 로고
    • P63 is a p53 homologue required for limb and epidermal morphogenesis
    • 10.1038/19531, 10227293
    • Mills AA, Zheng B, Wang XJ, Vogel H, Roop DR, Bradley A. p63 is a p53 homologue required for limb and epidermal morphogenesis. Nature 1999, 398(6729):708-713. 10.1038/19531, 10227293.
    • (1999) Nature , vol.398 , Issue.6729 , pp. 708-713
    • Mills, A.A.1    Zheng, B.2    Wang, X.J.3    Vogel, H.4    Roop, D.R.5    Bradley, A.6
  • 26
    • 0033594485 scopus 로고    scopus 로고
    • P63 is essential for regenerative proliferation in limb, craniofacial and epithelial development
    • 10.1038/19539, 10227294
    • Yang A, Schweitzer R, Sun D, Kaghad M, Walker N, Bronson RT, Tabin C, Sharpe A, Caput D, Crum C, et al. p63 is essential for regenerative proliferation in limb, craniofacial and epithelial development. Nature 1999, 398(6729):714-718. 10.1038/19539, 10227294.
    • (1999) Nature , vol.398 , Issue.6729 , pp. 714-718
    • Yang, A.1    Schweitzer, R.2    Sun, D.3    Kaghad, M.4    Walker, N.5    Bronson, R.T.6    Tabin, C.7    Sharpe, A.8    Caput, D.9    Crum, C.10
  • 27
    • 33847067125 scopus 로고    scopus 로고
    • P63-associated disorders
    • 10.4161/cc.6.3.3796, 17224651
    • Rinne T, Brunner HG, van Bokhoven H. p63-associated disorders. Cell Cycle 2007, 6(3):262-268. 10.4161/cc.6.3.3796, 17224651.
    • (2007) Cell Cycle , vol.6 , Issue.3 , pp. 262-268
    • Rinne, T.1    Brunner, H.G.2    van Bokhoven, H.3
  • 28
    • 33747872417 scopus 로고    scopus 로고
    • Loss of p63 leads to increased cell migration and up-regulation of genes involved in invasion and metastasis
    • 10.1158/0008-5472.CAN-06-2020, 16885358
    • Barbieri CE, Tang LJ, Brown KA, Pietenpol JA. Loss of p63 leads to increased cell migration and up-regulation of genes involved in invasion and metastasis. Cancer Res 2006, 66(15):7589-7597. 10.1158/0008-5472.CAN-06-2020, 16885358.
    • (2006) Cancer Res , vol.66 , Issue.15 , pp. 7589-7597
    • Barbieri, C.E.1    Tang, L.J.2    Brown, K.A.3    Pietenpol, J.A.4
  • 29
    • 33646429798 scopus 로고    scopus 로고
    • Gene expression analyses reveal molecular relationships among 20 regions of the human CNS
    • 10.1007/s10048-006-0032-6, 16572319
    • Roth RB, Hevezi P, Lee J, Willhite D, Lechner SM, Foster AC, Zlotnik A. Gene expression analyses reveal molecular relationships among 20 regions of the human CNS. Neurogenetics 2006, 7(2):67-80. 10.1007/s10048-006-0032-6, 16572319.
    • (2006) Neurogenetics , vol.7 , Issue.2 , pp. 67-80
    • Roth, R.B.1    Hevezi, P.2    Lee, J.3    Willhite, D.4    Lechner, S.M.5    Foster, A.C.6    Zlotnik, A.7
  • 30
    • 33644685968 scopus 로고    scopus 로고
    • Differential expression of a gene signature for scavenger/lectin receptors by endothelial cells and macrophages in human lymph node sinuses, the primary sites of regional metastasis
    • 10.1002/path.1921, 16440291
    • Martens JH, Kzhyshkowska J, Falkowski-Hansen M, Schledzewski K, Gratchev A, Mansmann U, Schmuttermaier C, Dippel E, Koenen W, Riedel F, et al. Differential expression of a gene signature for scavenger/lectin receptors by endothelial cells and macrophages in human lymph node sinuses, the primary sites of regional metastasis. J Pathol 2006, 208(4):574-589. 10.1002/path.1921, 16440291.
    • (2006) J Pathol , vol.208 , Issue.4 , pp. 574-589
    • Martens, J.H.1    Kzhyshkowska, J.2    Falkowski-Hansen, M.3    Schledzewski, K.4    Gratchev, A.5    Mansmann, U.6    Schmuttermaier, C.7    Dippel, E.8    Koenen, W.9    Riedel, F.10
  • 31
    • 51049111671 scopus 로고    scopus 로고
    • Gene expression changes in an animal melanoma model correlate with aggressiveness of human melanoma metastases
    • 10.1158/1541-7786.MCR-07-0344, 2756991, 18505921
    • Xu L, Shen SS, Hoshida Y, Subramanian A, Ross K, Brunet JP, Wagner SN, Ramaswamy S, Mesirov JP, Hynes RO. Gene expression changes in an animal melanoma model correlate with aggressiveness of human melanoma metastases. Mol Cancer Res 2008, 6(5):760-769. 10.1158/1541-7786.MCR-07-0344, 2756991, 18505921.
    • (2008) Mol Cancer Res , vol.6 , Issue.5 , pp. 760-769
    • Xu, L.1    Shen, S.S.2    Hoshida, Y.3    Subramanian, A.4    Ross, K.5    Brunet, J.P.6    Wagner, S.N.7    Ramaswamy, S.8    Mesirov, J.P.9    Hynes, R.O.10
  • 32
    • 49649103221 scopus 로고    scopus 로고
    • The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis
    • 10.1186/1755-8794-1-13, 2408576, 18442402
    • Riker AI, Enkemann SA, Fodstad O, Liu S, Ren S, Morris C, Xi Y, Howell P, Metge B, Samant RS, et al. The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis. BMC Med Genomics 2008, 1:13. 10.1186/1755-8794-1-13, 2408576, 18442402.
    • (2008) BMC Med Genomics , vol.1 , pp. 13
    • Riker, A.I.1    Enkemann, S.A.2    Fodstad, O.3    Liu, S.4    Ren, S.5    Morris, C.6    Xi, Y.7    Howell, P.8    Metge, B.9    Samant, R.S.10
  • 33
    • 17144420079 scopus 로고    scopus 로고
    • Letrozole-, anastrozole-, and tamoxifen-responsive genes in MCF-7aro cells: a microarray approach
    • Itoh T, Karlsberg K, Kijima I, Yuan YC, Smith D, Ye J, Chen S. Letrozole-, anastrozole-, and tamoxifen-responsive genes in MCF-7aro cells: a microarray approach. Mol Cancer Res 2005, 3(4):203-218.
    • (2005) Mol Cancer Res , vol.3 , Issue.4 , pp. 203-218
    • Itoh, T.1    Karlsberg, K.2    Kijima, I.3    Yuan, Y.C.4    Smith, D.5    Ye, J.6    Chen, S.7
  • 36
    • 20044363080 scopus 로고    scopus 로고
    • Gene expression signature predicts lymphatic metastasis in squamous cell carcinoma of the oral cavity
    • 10.1038/sj.onc.1208285, 15558013
    • O'Donnell RK, Kupferman M, Wei SJ, Singhal S, Weber R, O'Malley B, Cheng Y, Putt M, Feldman M, Ziober B, et al. Gene expression signature predicts lymphatic metastasis in squamous cell carcinoma of the oral cavity. Oncogene 2005, 24(7):1244-1251. 10.1038/sj.onc.1208285, 15558013.
    • (2005) Oncogene , vol.24 , Issue.7 , pp. 1244-1251
    • O'Donnell, R.K.1    Kupferman, M.2    Wei, S.J.3    Singhal, S.4    Weber, R.5    O'Malley, B.6    Cheng, Y.7    Putt, M.8    Feldman, M.9    Ziober, B.10
  • 40
    • 48649108698 scopus 로고    scopus 로고
    • P63 Expression in olfactory neuroblastoma and other small cell tumors of the sinonasal tract
    • 10.1309/TEDD2FCWH8W0H4HA, 18628089
    • Bourne TD, Bellizzi AM, Stelow EB, Loy AH, Levine PA, Wick MR, Mills SE. p63 Expression in olfactory neuroblastoma and other small cell tumors of the sinonasal tract. Am J Clin Pathol 2008, 130(2):213-218. 10.1309/TEDD2FCWH8W0H4HA, 18628089.
    • (2008) Am J Clin Pathol , vol.130 , Issue.2 , pp. 213-218
    • Bourne, T.D.1    Bellizzi, A.M.2    Stelow, E.B.3    Loy, A.H.4    Levine, P.A.5    Wick, M.R.6    Mills, S.E.7
  • 42
    • 27144532355 scopus 로고    scopus 로고
    • Alternative epithelial markers in sarcomatoid carcinomas of the head and neck, lung, and bladder-p63, MOC-31, and TTF-1
    • 10.1038/modpathol.3800451, 15976812
    • Lewis JS, Ritter JH, El-Mofty S. Alternative epithelial markers in sarcomatoid carcinomas of the head and neck, lung, and bladder-p63, MOC-31, and TTF-1. Mod Pathol 2005, 18(11):1471-1481. 10.1038/modpathol.3800451, 15976812.
    • (2005) Mod Pathol , vol.18 , Issue.11 , pp. 1471-1481
    • Lewis, J.S.1    Ritter, J.H.2    El-Mofty, S.3
  • 43
    • 1242307857 scopus 로고    scopus 로고
    • P63-driven nuclear accumulation of beta-catenin is not a frequent event in human neoplasms
    • 10.1078/0344-0338-00497, 14989490
    • Reis-Filho JS, Simpson PT, Fulford LG, Martins A, Schmitt FC. P63-driven nuclear accumulation of beta-catenin is not a frequent event in human neoplasms. Pathol Res Pract 2003, 199(12):785-793. 10.1078/0344-0338-00497, 14989490.
    • (2003) Pathol Res Pract , vol.199 , Issue.12 , pp. 785-793
    • Reis-Filho, J.S.1    Simpson, P.T.2    Fulford, L.G.3    Martins, A.4    Schmitt, F.C.5
  • 44
    • 67651108842 scopus 로고    scopus 로고
    • The expression of p63 and p53 in keratoacanthoma and intraepidermal and invasive neoplasms of the skin
    • 10.1016/j.prp.2009.01.010, 19577853
    • Sakiz D, Turkmenoglu TT, Kabukcuoglu F. The expression of p63 and p53 in keratoacanthoma and intraepidermal and invasive neoplasms of the skin. Pathol Res Pract 2009, 205(9):589-594. 10.1016/j.prp.2009.01.010, 19577853.
    • (2009) Pathol Res Pract , vol.205 , Issue.9 , pp. 589-594
    • Sakiz, D.1    Turkmenoglu, T.T.2    Kabukcuoglu, F.3
  • 45
    • 0032420358 scopus 로고    scopus 로고
    • Ah receptor agonists as endocrine disruptors: antiestrogenic activity and mechanisms
    • Safe S, Wang F, Porter W, Duan R, McDougal A. Ah receptor agonists as endocrine disruptors: antiestrogenic activity and mechanisms. Toxicol Lett 1998, (102-103):343-347.
    • (1998) Toxicol Lett , Issue.102-103 , pp. 343-347
    • Safe, S.1    Wang, F.2    Porter, W.3    Duan, R.4    McDougal, A.5
  • 46
    • 1342288026 scopus 로고    scopus 로고
    • Affy--analysis of Affymetrix GeneChip data at the probe level
    • 10.1093/bioinformatics/btg405, 14960456
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20(3):307-315. 10.1093/bioinformatics/btg405, 14960456.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 50
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207, 99122, 11752295
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30(1):207-210. 10.1093/nar/30.1.207, 99122, 11752295.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 51
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249, 12925520
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249, 12925520.
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5    Scherf, U.6    Speed, T.P.7
  • 52
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Soc Ser B 1995, 57(1):289-300.
    • (1995) J Roy Statist Soc Ser B , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 53
    • 34250652449 scopus 로고    scopus 로고
    • Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series
    • 10.1158/1078-0432.CCR-06-2765, 17545524
    • Desmedt C, Piette F, Loi S, Wang Y, Lallemand F, Haibe-Kains B, Viale G, Delorenzi M, Zhang Y, d'Assignies MS, et al. Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series. Clin Cancer Res 2007, 13(11):3207-3214. 10.1158/1078-0432.CCR-06-2765, 17545524.
    • (2007) Clin Cancer Res , vol.13 , Issue.11 , pp. 3207-3214
    • Desmedt, C.1    Piette, F.2    Loi, S.3    Wang, Y.4    Lallemand, F.5    Haibe-Kains, B.6    Viale, G.7    Delorenzi, M.8    Zhang, Y.9    d'Assignies, M.S.10
  • 54
    • 26444546442 scopus 로고    scopus 로고
    • An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
    • 10.1073/pnas.0506230102, 1197273, 16141321
    • Miller LD, Smeds J, George J, Vega VB, Vergara L, Ploner A, Pawitan Y, Hall P, Klaar S, Liu ET, et al. An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. Proc Natl Acad Sci USA 2005, 102(38):13550-13555. 10.1073/pnas.0506230102, 1197273, 16141321.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.38 , pp. 13550-13555
    • Miller, L.D.1    Smeds, J.2    George, J.3    Vega, V.B.4    Vergara, L.5    Ploner, A.6    Pawitan, Y.7    Hall, P.8    Klaar, S.9    Liu, E.T.10
  • 56
    • 76049104235 scopus 로고    scopus 로고
    • PD 0332991, a selective cyclin D kinase 4/6 inhibitor, preferentially inhibits proliferation of luminal estrogen receptor-positive human breast cancer cell lines in vitro
    • 10.1186/bcr2419, 2790859, 19874578
    • Finn RS, Dering J, Conklin D, Kalous O, Cohen DJ, Desai AJ, Ginther C, Atefi M, Chen I, Fowst C, et al. PD 0332991, a selective cyclin D kinase 4/6 inhibitor, preferentially inhibits proliferation of luminal estrogen receptor-positive human breast cancer cell lines in vitro. Breast Cancer Res 2009, 11(5):R77. 10.1186/bcr2419, 2790859, 19874578.
    • (2009) Breast Cancer Res , vol.11 , Issue.5
    • Finn, R.S.1    Dering, J.2    Conklin, D.3    Kalous, O.4    Cohen, D.J.5    Desai, A.J.6    Ginther, C.7    Atefi, M.8    Chen, I.9    Fowst, C.10
  • 59
    • 33845209913 scopus 로고    scopus 로고
    • A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
    • 10.1016/j.ccr.2006.10.008, 2730521, 17157791
    • Neve RM, Chin K, Fridlyand J, Yeh J, Baehner FL, Fevr T, Clark L, Bayani N, Coppe JP, Tong F, et al. A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Cancer Cell 2006, 10(6):515-527. 10.1016/j.ccr.2006.10.008, 2730521, 17157791.
    • (2006) Cancer Cell , vol.10 , Issue.6 , pp. 515-527
    • Neve, R.M.1    Chin, K.2    Fridlyand, J.3    Yeh, J.4    Baehner, F.L.5    Fevr, T.6    Clark, L.7    Bayani, N.8    Coppe, J.P.9    Tong, F.10
  • 60
    • 12344302247 scopus 로고    scopus 로고
    • Characterization of a novel cell line established from a patient with Herceptin-resistant breast cancer
    • Tanner M, Kapanen AI, Junttila T, Raheem O, Grenman S, Elo J, Elenius K, Isola J. Characterization of a novel cell line established from a patient with Herceptin-resistant breast cancer. MolCancer Ther 2004, 3(12):1585-1592.
    • (2004) MolCancer Ther , vol.3 , Issue.12 , pp. 1585-1592
    • Tanner, M.1    Kapanen, A.I.2    Junttila, T.3    Raheem, O.4    Grenman, S.5    Elo, J.6    Elenius, K.7    Isola, J.8
  • 61
    • 0031767109 scopus 로고    scopus 로고
    • Inhibition of cell proliferation by 17beta-estradiol and heregulin beta1 in estrogen receptor negative human breast carcinoma cell lines
    • Yoo JY, Lessor T, Hamburger AW. Inhibition of cell proliferation by 17beta-estradiol and heregulin beta1 in estrogen receptor negative human breast carcinoma cell lines. Breast Cancer ResTreat 1998, 51(1):71-81.
    • (1998) Breast Cancer ResTreat , vol.51 , Issue.1 , pp. 71-81
    • Yoo, J.Y.1    Lessor, T.2    Hamburger, A.W.3
  • 63
    • 84888282903 scopus 로고    scopus 로고
    • Wellcome Trust Sanger Institute, Cancer Genome Project, Cell Line Identity Typing
    • Wellcome Trust Sanger Institute, Cancer Genome Project, Cell Line Identity Typing. , http://www.sanger.ac.uk/genetics/CGP/Genotyping/synlinestable.shtml


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