Preditcing protein subcellular location by AdaBoost.M1 algorithm

2011 2nd International Conference on Artificial Intelligence, Management Science and Electronic Commerce, AIMSEC 2011 - Proceedings

Volumn , Issue , 2011, Pages 3168-3171

  Fan, Haifeng ^a   Wang, Haixing ^a  

^a HENAN POLYTECHNIC UNIVERSITY   (China)

Author keywords

AdaBoost.M1; Bioinformatic; Protein subcellular location; PseAAC

Indexed keywords

ADABOOST ALGORITHM; ADABOOST.M1; AMINO ACID COMPOSITIONS; BIOLOGICAL FUNCTIONS; DATA SETS; IMPROVED ALGORITHM; MOLECULAR AND CELLULAR BIOLOGIES; MULTI-CLASS; PROTEIN SUBCELLULAR LOCATION; PSEAAC;

ADAPTIVE BOOSTING; ALGORITHMS; AMINO ACIDS; ARTIFICIAL INTELLIGENCE; BIOINFORMATICS; CYTOLOGY; ELECTRONIC COMMERCE; FORECASTING; MANAGEMENT SCIENCE;

PROTEINS;

EID: 80053268777     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/AIMSEC.2011.6011378     Document Type: Conference Paper

References (17)

1. Hao Lin, Hui Ding, Feng-Biao Guo, An-Ying Zhang and Jian Huang. (2008) Protein pept. Lett., 15., 739-744.
2. Hao Lin, Hao Wang, Hui Ding, Ying-Li Chen.(2009). dsa., 57, 321.
3. Bairoch A, Apweiler R The SWISS-PROT protein sequence databank and its supplement TrEMBL. Nucleic Acids Res. 2000, 25: 31-36
4. Cedano J, Aloy P, JA, P'erez-Pons Querol E. "Relation betweenamino acid composition and cellular location of proteins". J Mol Biol. 1997 266: 594-600.
5. Nakashima, H. & Nishikawa, K. "Discrimination of intracellular and extracellular proteins using amino acid composition and residuepairfrequencies". J. Mol. Biol. 1994, 238, 54-61
6. Chou KC, Elrod DW. "Prediction of membrane protein types and subcellular locations". Proteins Struct Function Genet. 1999, 34: 137-153
7. Chou KC, "Prediction of protein cellular attributes using pseudo amino acid composition". Proteins Struct Function Genet, Vol. 44, 60, 2001, 43: 246-255.
8. Matthews BW. "Comparison of the predicted and observed sec-ondary structure of T4 phage lysozyme". Biochim Biophys Acta. 1975, 405: 442-451
9. Chou KC, Zhang CT. "Review: Prediction of protein structural classes". Crit Rev Biochem Mol Biol. 1995, 30: 275-349.
10. Chou KC. "Review: Progress in protein structural class predictionand its impact to bioinformatics and proteomics". Curr Protein Pept Sci. 2005, 6: 423-436.
11. H. B. Shen. "Using ensemble classifier to identify membrane protein types". Amino Acids. 2007. 32: 483-448.
12. Chou JJ, Zhang CT. "A joint prediction of the folding types of 1490 human proteins from their genetic codons". J Theor Biol. 1993, 161: 251-262.
13. Chou KC, Zhang CT. "Predicting protein folding types by distance functions that make allowances for amino acid interactions". J Biol Chem. 1994, 269: 22014-22020.
14. Chou PY. "Prediction of protein structural classes from amino acid composition. In: Fasman GD (ed) Prediction of protein structure and the principles of protein conformation". PlenumPress, New York. 1989, pp 549-586.
15. Bing Niu, Yu-Dong Cai, Wen-Cong Lu, Guo-Zheng Li, Kuo-Chen Chou. "predicting Proteins Structural Class with AdaBoost Learner." Protein& Peptide Letters. 2006, 13, 489-492.
16. Freund, Y. and Schapire, R. (1997) J. Computer and System Sciences, 55, 119-139.
17. Schapire, R. E. and Singer, Y. (1999) Machine Learning, 37, 297-336