-
1
-
-
77950456761
-
4.0-Å resolution cryo-em structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement
-
Cong Y., Baker M.L., Jakana J., Woolford D., Miller E.J., Reissmann S., Kumar R.N., Redding-Johanson A.M., Batth T., Mukhopadhyay A., Ludtke S.J., Frydman J., Chiu W. 4.0-Å resolution cryo-em structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proceedings of the National Academy of Sciences USA 2010, 107:4967-4972.
-
(2010)
Proceedings of the National Academy of Sciences USA
, vol.107
, pp. 4967-4972
-
-
Cong, Y.1
Baker, M.L.2
Jakana, J.3
Woolford, D.4
Miller, E.J.5
Reissmann, S.6
Kumar, R.N.7
Redding-Johanson, A.M.8
Batth, T.9
Mukhopadhyay, A.10
Ludtke, S.J.11
Frydman, J.12
Chiu, W.13
-
2
-
-
0002170585
-
The theoretical resolution limit of the electron microscope
-
Scherzer O. The theoretical resolution limit of the electron microscope. Journal of Applied Physics 1949, 20:20.
-
(1949)
Journal of Applied Physics
, vol.20
, pp. 20
-
-
Scherzer, O.1
-
4
-
-
0026566945
-
A brief look at imaging and contrast transfer
-
Wade R.H. A brief look at imaging and contrast transfer. Ultramicroscopy 1992, 46:145-156.
-
(1992)
Ultramicroscopy
, vol.46
, pp. 145-156
-
-
Wade, R.H.1
-
7
-
-
84892793245
-
-
Transmission Electron Microscopy: A Textbook for Materials Science, second ed.
-
D.B. Williams, C.B. Carter, Transmission Electron Microscopy: A Textbook for Materials Science, second ed., 2009.
-
(2009)
-
-
Williams, D.B.1
Carter, C.B.2
-
8
-
-
0033377664
-
EMAN: semiautomated software for high-resolution single-particle reconstructions
-
Ludtke S.J., Baldwin P.R., Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstructions. Journal of Structural Biology 1999, 128:82-97.
-
(1999)
Journal of Structural Biology
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
9
-
-
0343052627
-
A spectral estimation approach to contrast transfer function detection in electron microscopy
-
Fernández J.J., Sanjurjo J.R., Carazo J.M. A spectral estimation approach to contrast transfer function detection in electron microscopy. Ultramicroscopy 1997, 68:267-295.
-
(1997)
Ultramicroscopy
, vol.68
, pp. 267-295
-
-
Fernández, J.J.1
Sanjurjo, J.R.2
Carazo, J.M.3
-
10
-
-
0030960710
-
Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome
-
Zhu J., Penczek P.A., Schröder R., Frank J. Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome. Journal of Structural Biology 1997, 118:197-219.
-
(1997)
Journal of Structural Biology
, vol.118
, pp. 197-219
-
-
Zhu, J.1
Penczek, P.A.2
Schröder, R.3
Frank, J.4
-
11
-
-
0035782663
-
Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination
-
Saad A., Ludtke S.J., Jakana J., Rixon F.J., Tsuruta H., Chiu W. Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. Journal of Structural Biology 2001, 133:32-42.
-
(2001)
Journal of Structural Biology
, vol.133
, pp. 32-42
-
-
Saad, A.1
Ludtke, S.J.2
Jakana, J.3
Rixon, F.J.4
Tsuruta, H.5
Chiu, W.6
-
12
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell J.A., Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. Journal of Structural Biology 2003, 142:334-347.
-
(2003)
Journal of Structural Biology
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
13
-
-
0345701398
-
A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment
-
Veláquez-Muriel J.A., Sorzano C.O.S., Fernńdez J.J., Carazo J.M. A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment. Ultramicroscopy 2003, 96:17-35.
-
(2003)
Ultramicroscopy
, vol.96
, pp. 17-35
-
-
Veláquez-Muriel, J.A.1
Sorzano, C.O.S.2
Fernńdez, J.J.3
Carazo, J.M.4
-
14
-
-
0344120730
-
Automated determination of parameters describing power spectra of micrograph images in electron microscopy
-
Huang Z., Baldwin P.R., Mullapudi S., Penczek P.A. Automated determination of parameters describing power spectra of micrograph images in electron microscopy. Journal of Structural Biology 2003, 144:79-94.
-
(2003)
Journal of Structural Biology
, vol.144
, pp. 79-94
-
-
Huang, Z.1
Baldwin, P.R.2
Mullapudi, S.3
Penczek, P.A.4
-
15
-
-
35048832803
-
Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function
-
Sorzano C.O.S., Jonic S., Núñez-Ramírez R., Boisset N., Carazo J.M. Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function. Journal of Structural Biology 2007, 160:249-262.
-
(2007)
Journal of Structural Biology
, vol.160
, pp. 249-262
-
-
Sorzano, C.O.S.1
Jonic, S.2
Núñez-Ramírez, R.3
Boisset, N.4
Carazo, J.M.5
-
16
-
-
61449100438
-
Estimating contrast transfer function and associated parameters by constrained non-linear optimization
-
Yang C., Jiang W., Chen D.H., Adiga U., Ng E.G., Chiu W. Estimating contrast transfer function and associated parameters by constrained non-linear optimization. Journal of Microscopy 2009, 233:391-403.
-
(2009)
Journal of Microscopy
, vol.233
, pp. 391-403
-
-
Yang, C.1
Jiang, W.2
Chen, D.H.3
Adiga, U.4
Ng, E.G.5
Chiu, W.6
-
17
-
-
0016688080
-
Molecular structure determination by electron microscopy of unstained crystalline specimens
-
Unwin P.N., Henderson R. Molecular structure determination by electron microscopy of unstained crystalline specimens. Journal of Molecular Biology 1975, 94:425-440.
-
(1975)
Journal of Molecular Biology
, vol.94
, pp. 425-440
-
-
Unwin, P.N.1
Henderson, R.2
-
18
-
-
0029916485
-
A new generation of the IMAGIC image processing system
-
van Heel M., Harauz G., Orlova E.V., Schmidt R., Schatz M. A new generation of the IMAGIC image processing system. Journal of Structural Biology 1996, 116:17-24.
-
(1996)
Journal of Structural Biology
, vol.116
, pp. 17-24
-
-
van Heel, M.1
Harauz, G.2
Orlova, E.V.3
Schmidt, R.4
Schatz, M.5
-
19
-
-
58049204808
-
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs
-
Shaikh T.R., Gao H., Baxter W.T., J Asturias F., Boisset N., Leith A., Frank J. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nature Protocols 2008, 3:1941-1974.
-
(2008)
Nature Protocols
, vol.3
, pp. 1941-1974
-
-
Shaikh, T.R.1
Gao, H.2
Baxter, W.T.3
J Asturias, F.4
Boisset, N.5
Leith, A.6
Frank, J.7
-
20
-
-
5144235316
-
XMIPP: a new generation of an open-source image processing package for electron microscopy
-
Sorzano C.O.S., Marabini R., Velázquez-Muriel J.A., Bilbao-Castro J.R., Scheres S.H.W., Carazo J.M., Pascual-Montano A. XMIPP: a new generation of an open-source image processing package for electron microscopy. Journal of Structural Biology 2004, 148:194-204.
-
(2004)
Journal of Structural Biology
, vol.148
, pp. 194-204
-
-
Sorzano, C.O.S.1
Marabini, R.2
Velázquez-Muriel, J.A.3
Bilbao-Castro, J.R.4
Scheres, S.H.W.5
Carazo, J.M.6
Pascual-Montano, A.7
-
21
-
-
33845332754
-
EMAN2: an extensible image processing suite for electron microscopy
-
Tang G.L., Peng L., Baldwin P.R., Mann D.S., Jiang W., Rees I., Ludtke S.J. EMAN2: an extensible image processing suite for electron microscopy. Journal of Structural Biology 2007, 157:38-46.
-
(2007)
Journal of Structural Biology
, vol.157
, pp. 38-46
-
-
Tang, G.L.1
Peng, L.2
Baldwin, P.R.3
Mann, D.S.4
Jiang, W.5
Rees, I.6
Ludtke, S.J.7
-
22
-
-
20144378098
-
ACE: Automated CTF estimation
-
Mallick S.P., Carragher B., Potter C.S., Kriegman D.J. ACE: Automated CTF estimation. Ultramicroscopy 2005, 104:8-29.
-
(2005)
Ultramicroscopy
, vol.104
, pp. 8-29
-
-
Mallick, S.P.1
Carragher, B.2
Potter, C.S.3
Kriegman, D.J.4
-
23
-
-
33845407142
-
A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas
-
Jonic S., Sorzano C.O.S., Cottevieille M., Larquet E., Boisset N. A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas. Journal of Structural Biology 2007, 157:156-167.
-
(2007)
Journal of Structural Biology
, vol.157
, pp. 156-167
-
-
Jonic, S.1
Sorzano, C.O.S.2
Cottevieille, M.3
Larquet, E.4
Boisset, N.5
-
24
-
-
0021158241
-
Time-resolved low-dose microscopy of glutamine synthetase molecules
-
Kunath W., Weiss K., Sack-Kongehl H., Kessel M., Zeitler E. Time-resolved low-dose microscopy of glutamine synthetase molecules. Ultramicroscopy 1984, 13:241-252.
-
(1984)
Ultramicroscopy
, vol.13
, pp. 241-252
-
-
Kunath, W.1
Weiss, K.2
Sack-Kongehl, H.3
Kessel, M.4
Zeitler, E.5
-
25
-
-
0021786909
-
Quantitative analysis of image contrast in electron micrographs of beam-sensitive crystals
-
Henderson R., Glaeser R.M. Quantitative analysis of image contrast in electron micrographs of beam-sensitive crystals. Ultramicroscopy 1985, 16:139-150.
-
(1985)
Ultramicroscopy
, vol.16
, pp. 139-150
-
-
Henderson, R.1
Glaeser, R.M.2
-
26
-
-
33845644105
-
Stroboscopic image capture: reducing the dose per frame by a factor of 30 does not prevent beam-induced specimen movement in paraffin
-
Typke D., Gilpin C.J., Downing K.H., Glaeser R.M. Stroboscopic image capture: reducing the dose per frame by a factor of 30 does not prevent beam-induced specimen movement in paraffin. Ultramicroscopy 2007, 107:106-115.
-
(2007)
Ultramicroscopy
, vol.107
, pp. 106-115
-
-
Typke, D.1
Gilpin, C.J.2
Downing, K.H.3
Glaeser, R.M.4
-
27
-
-
79955565763
-
Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate
-
Karuppasamy M., Karimi Nejadasl F., Vulovic M., Koster A.J., Ravelli R.B.G. Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate. Journal of Synchrotron Radiation 2011, 18:398-412.
-
(2011)
Journal of Synchrotron Radiation
, vol.18
, pp. 398-412
-
-
Karuppasamy, M.1
Karimi Nejadasl, F.2
Vulovic, M.3
Koster, A.J.4
Ravelli, R.B.G.5
-
28
-
-
37349002528
-
A dose-rate effect in single-particle electron microscopy
-
Chen J.Z., Sachse C., Xu C., Mielke T., Spahn C.M.T., Grigorieff N. A dose-rate effect in single-particle electron microscopy. Journal of Structural Biology 2008, 161:92-100.
-
(2008)
Journal of Structural Biology
, vol.161
, pp. 92-100
-
-
Chen, J.Z.1
Sachse, C.2
Xu, C.3
Mielke, T.4
Spahn, C.M.T.5
Grigorieff, N.6
-
29
-
-
67650544797
-
Detective quantum efficiency of electron area detectors in electron microscopy
-
McMullan G., Chen S., Henderson R., Faruqi A.R. Detective quantum efficiency of electron area detectors in electron microscopy. Ultramicroscopy 2009, 109:1126-1143.
-
(2009)
Ultramicroscopy
, vol.109
, pp. 1126-1143
-
-
McMullan, G.1
Chen, S.2
Henderson, R.3
Faruqi, A.R.4
-
30
-
-
70349970912
-
Enhanced imaging in low dose electron microscopy using electron counting
-
McMullan G., Clark A., Turchetta R., Faruqi A.R. Enhanced imaging in low dose electron microscopy using electron counting. Ultramicroscopy 2009, 109:1411-1416.
-
(2009)
Ultramicroscopy
, vol.109
, pp. 1411-1416
-
-
McMullan, G.1
Clark, A.2
Turchetta, R.3
Faruqi, A.R.4
-
31
-
-
0001510472
-
The treatment of errors in the isomorphous replacement method
-
Blow D.M., Crick F.H.C. The treatment of errors in the isomorphous replacement method. Acta Crystallographica 1959, 12:794-802.
-
(1959)
Acta Crystallographica
, vol.12
, pp. 794-802
-
-
Blow, D.M.1
Crick, F.H.C.2
-
33
-
-
0032540273
-
Three-dimensional structure of bovine NADH: ubiquinone oxidoreductase (complex I) at 22 Å in ice
-
Grigorieff N. Three-dimensional structure of bovine NADH: ubiquinone oxidoreductase (complex I) at 22 Å in ice. Journal of Molecular Biology 1998, 277:1033-1046.
-
(1998)
Journal of Molecular Biology
, vol.277
, pp. 1033-1046
-
-
Grigorieff, N.1
-
35
-
-
51549093939
-
Radial averages of astigmatic TEM images
-
Fernando K.V. Radial averages of astigmatic TEM images. Journal of Structural Biology 2008, 164:49-59.
-
(2008)
Journal of Structural Biology
, vol.164
, pp. 49-59
-
-
Fernando, K.V.1
-
36
-
-
0015335578
-
A study on heavy/light atom discrimination in bright field electron microscopy using the computer
-
Frank J. A study on heavy/light atom discrimination in bright field electron microscopy using the computer. Biophysics Journal 1972, 12:484-511.
-
(1972)
Biophysics Journal
, vol.12
, pp. 484-511
-
-
Frank, J.1
-
37
-
-
0039507411
-
Structure of purple membrane from Halobacterium halobium: recording, measurement and evaluation of electron micrographs at 3.5Å resolution
-
Henderson R., Baldwin J.M., Downing K.H., Lepault J., Zemlin F. Structure of purple membrane from Halobacterium halobium: recording, measurement and evaluation of electron micrographs at 3.5Å resolution. Ultramicroscopy 1986, 19:147-178.
-
(1986)
Ultramicroscopy
, vol.19
, pp. 147-178
-
-
Henderson, R.1
Baldwin, J.M.2
Downing, K.H.3
Lepault, J.4
Zemlin, F.5
-
38
-
-
0000873069
-
A method for the solution of certain problems in least-squares
-
Levenberg K. A method for the solution of certain problems in least-squares. Quarterly Applied Mathematics 1944, 2:164-168.
-
(1944)
Quarterly Applied Mathematics
, vol.2
, pp. 164-168
-
-
Levenberg, K.1
-
39
-
-
0000169232
-
An algorithm for least-squares estimation of nonlinear parameters
-
Marquardt D. An algorithm for least-squares estimation of nonlinear parameters. SIAM Journal Applied Mathematics 1963, 11:431-441.
-
(1963)
SIAM Journal Applied Mathematics
, vol.11
, pp. 431-441
-
-
Marquardt, D.1
-
40
-
-
33745843278
-
Lumbricus erythrocruorin at 3.5Å resolution: architecture of a megadalton respiratory complex
-
Royer W.E., Sharma H., Strand K., Knapp J.E., Bhyravbhatla B. Lumbricus erythrocruorin at 3.5Å resolution: architecture of a megadalton respiratory complex. Structure 2006, 14:1167-1177.
-
(2006)
Structure
, vol.14
, pp. 1167-1177
-
-
Royer, W.E.1
Sharma, H.2
Strand, K.3
Knapp, J.E.4
Bhyravbhatla, B.5
-
41
-
-
77955183209
-
Estimation of defocus and astigmatism in transmission electron microscopy
-
Vulovic M., Brandt P., Ravelli R.B.G., Koster A.J., van Vliet L.J., Rieger B. Estimation of defocus and astigmatism in transmission electron microscopy. Proceedings of the IEEE International Symposium on Biomedical Imaging 2010, 1121-1124.
-
(2010)
Proceedings of the IEEE International Symposium on Biomedical Imaging
, pp. 1121-1124
-
-
Vulovic, M.1
Brandt, P.2
Ravelli, R.B.G.3
Koster, A.J.4
van Vliet, L.J.5
Rieger, B.6
-
42
-
-
33646784015
-
CTF determination and correction in electron cryotomography
-
Fernández J.J., Li S., Crowther R.A. CTF determination and correction in electron cryotomography. Ultramicroscopy 2006, 106:587-596.
-
(2006)
Ultramicroscopy
, vol.106
, pp. 587-596
-
-
Fernández, J.J.1
Li, S.2
Crowther, R.A.3
-
43
-
-
51549084591
-
Sharpening high resolution information in single particle electron cryomicroscopy
-
Fernández J.J., Luque D., Castón J.R., Carrascosa J.L. Sharpening high resolution information in single particle electron cryomicroscopy. Journal of Structural Biology 2008, 164:170-175.
-
(2008)
Journal of Structural Biology
, vol.164
, pp. 170-175
-
-
Fernández, J.J.1
Luque, D.2
Castón, J.R.3
Carrascosa, J.L.4
|