Single-molecule force spectroscopy of multimodular proteins: A new method to extract kinetic unfolding parameters

Journal of Advanced Microscopy Research

Volumn 6, Issue 1, 2011, Pages 1-6

  Benedetti, Fabrizio ^a   Sekatskii, Sergey K ^a   Dietler, Giovanni ^a  

^a EPFL   (Switzerland)

Author keywords

Atomic force microscopy; Force spectroscopy; Kinetic parameters; Protein elasticity; Protein unfolding

Indexed keywords

EXPERIMENTAL DATA; FORCE SPECTROSCOPY; LINEAR DEPENDENCE; LOADING CONDITION; MODIFIED EQUATION; MULTI-MODULAR; PROTEIN UNFOLDING; SINGLE MOLECULE FORCE SPECTROSCOPY; SINGLE-MOLECULE; UNFOLDING PROCESS;

ATOMIC FORCE MICROSCOPY; ELASTICITY; EXPERIMENTS; KINETIC PARAMETERS; KINETICS; LOADING; MOLECULES; PROBABILITY DISTRIBUTIONS;

PROTEINS;

EID: 80053094681     PISSN: 21567573     EISSN: 21567581     Source Type: Journal    
DOI: 10.1166/jamr.2011.1047     Document Type: Article

References (24)

1. J. Zlatanova, S. M. Lindsay, and S. H. Leuba, Prog. Biophys. Mol. Bio. 74, 37 (2000).
2. J. W. Weisel, H. Shuman, and R. I. Litvinov, Curr. Opin. Struc. Biol. 13, 227 (2003).
3. C. K. Lee, Y. M. Wang, L. S. Huang, and S. M. Lin, Micron 38, 446 (2007).
4. C. Cecconi, E. A. Shank, C. Bustamante, and S. Marqusee, Science 309, 2057 (2005).
5. E. A. Shank, C. Cecconi, J. W. Dill, S. Marqusee, and C. Bustamante, Nature 465, 637 (2010).
6. A. Garg, Phys. Rev. B 51, 15592 (1995).
7. C. Friedsam, A. K. Wehle, F. Kuhner, and H. E. Gaub, J. Phys.-Condens. Mat. 15, S1709 (2003).
8. G. I. Bell, Science 200, 618 (1978).
9. M. Carrion-Vazquez, A. F. Oberhauser, S. B. Fowler, P. E. Marszalek, S. E. Broedel, J. Clarke, and J. M. Fernandez, P. Natl. Acad. Sci. USA 96, 3694 (1999).
10. D. B. Staple, S. H. Payne, A. L. C. Reddin, and H. J. Kreuzer, Phys. Rev. Lett. 101, 248301 (2008).
11. D. J. Brockwell, G. S. Beddard, E. Paci, D. K. West, P. D. Olmsted, D. A. Smith, and S. E. Radford, Biophys. J. 89, 506 (2005).
12. G. Yoon, H. J. Park, S. Na, and K. Eom, J. Comput. Chem. 30, 873 (2009).
13. D. B. Staple, S. H. Payne, A. L. C. Reddin, and H. J. Kreuzer, Phys. Biol. 6 (2009).
14. R. Rounsevell, J. R. Forman, and J. Clarke, Methods 34, 100 (2004).
15. H. Dietz and M. Rief, Phys. Rev. Lett. 100, 098101 (2008).
16. Y. Cao and H. B. Li, Nat. Mater. 6, 109 (2007).
17. Y. Cao, C. Lam, M. J. Wang, and H. B. Li, Angew. Chem. Int. Edit. 45, 642 (2006).
18. H. Li, Org. Biomol. Chem. 5, 3399 (2007).
19. E. L. Florin, M. Rief, H. Lehmann, M. Ludwig, C. Dornmair, V. T. Moy, and H. E. Gaub, Biosens. Bioelectron. 10, 895 (1995).
20. B. Ohler, Veeco Application Note, available at www.veeco.com/library/ appnotes.php.
21. M. Sandal, F. Valle, I. Tessari, S. Mammi, E. Bergantino, F. Musiani, M. Brucale, L. Bubacco, and B. Samorì, PLos Biol. 6, 99 (2008).
22. M. Sandal, F. Benedetti, M. Brucale, A. Gomez-Casado, and B. Samorì, Bioinformatics 25, 1428 (2009).
23. B. W. Silverman, Density Estimation for Statistics and Data Analysis, Chapman & Hall/CRC, Boca Raton (1986).
24. B. Efron and R. J. Tibshirani, An Introduction to the Bootstrap, Chapman & Hall/CRC, Boca Raton (1997).