-
2
-
-
0035719931
-
Amphipathic α helical antimicrobial peptides: A systematic study of the effects of structural and physical properties on biological activity
-
DOI 10.1046/j.0014-2956.2001.02494.x
-
A. Giangaspero, L. Sandri, and A. Tossi Amphipathic alpha helical antimicrobial peptides-a systematic study of the effects of structural and physical properties on biological activity Eur. J. Biochem. 268 21 2001 5589 5600 (Pubitemid 34183324)
-
(2001)
European Journal of Biochemistry
, vol.268
, Issue.21
, pp. 5589-5600
-
-
Giangaspero, A.1
Sandri, L.2
Tossi, A.3
-
3
-
-
0032719739
-
Structural features of helical antimicrobial peptides: Their potential to modulate activity on model membranes and biological cells
-
M. Dathe, and T. Wieprecht Structural features of helical antimicrobial peptides: their potential to modulate activity on model membranes and biological cells Biochem. Biophys. Acta 1462 1-2 1999 71 87
-
(1999)
Biochem. Biophys. Acta
, vol.1462
, Issue.12
, pp. 71-87
-
-
Dathe, M.1
Wieprecht, T.2
-
4
-
-
0030957823
-
Molecular basis for membrane phospholipid diversity: Why are there so many lipids?
-
DOI 10.1146/annurev.biochem.66.1.199
-
W. Dowhan Molecular basis for membrane phospholipid diversity: why are there so many lipids? Annu. Rev. Biochem. 66 1997 199 232 (Pubitemid 27274656)
-
(1997)
Annual Review of Biochemistry
, vol.66
, pp. 199-232
-
-
Dowhan, W.1
-
5
-
-
0025876649
-
Static and dynamic lipid asymmetry in cell membranes
-
P.F. Devaux Static and dynamic lipid asymmetry in cell membranes Biochemistry 30 1991 1163 1173
-
(1991)
Biochemistry
, vol.30
, pp. 1163-1173
-
-
Devaux, P.F.1
-
6
-
-
49749095609
-
Effect of antimicrobial peptides from Australian tree frogs on anionic phospholipid membranes
-
J.D. Gehman, F. Luc, K. Hall, T.H. Lee, M.P. Boland, T.L. Pukala, J.H. Bowie, M.I. Aguilar, and F. Separovic Effect of antimicrobial peptides from Australian tree frogs on anionic phospholipid membranes Biochemistry 47 2008 8557 8565
-
(2008)
Biochemistry
, vol.47
, pp. 8557-8565
-
-
Gehman, J.D.1
Luc, F.2
Hall, K.3
Lee, T.H.4
Boland, M.P.5
Pukala, T.L.6
Bowie, J.H.7
Aguilar, M.I.8
Separovic, F.9
-
7
-
-
45749113323
-
Aggregation of cateslytin β-sheets on negatively charged lipids promotes rigid membrane domains. A new mode of action for antimicrobial peptides?
-
DOI 10.1021/bi800448h
-
F. Jean-Francois, S. Castano, B. Desbat, B. Odaert, M. Roux, M.H. Metz-Boutigue, and E.J. Dufourc Aggregation of cateslytin beta-sheets on negatively charged lipids promotes rigid membrane domains. A new mode of action for antimicrobial peptides? Biochemistry 47 2008 6394 6402 (Pubitemid 351874231)
-
(2008)
Biochemistry
, vol.47
, Issue.24
, pp. 6394-6402
-
-
Jean-Francois, F.1
Castano, S.2
Desbat, B.3
Odaert, B.4
Roux, M.5
Metz-Boutigue, M.-H.6
Dufourc, E.J.7
-
8
-
-
0030738014
-
Interactions of an antimicrobial peptide, magainin 2, with outer and inner membranes of Gram-negative bacteria
-
DOI 10.1016/S0005-2736(97)00051-5, PII S0005273697000515
-
K. Matsuzaki, K. Sugishita, M. Harada, N. Fujii, and K. Miyajima Interactions of an antimicrobial peptide, magainin 2, with outer and inner membranes of Gram-negative bacteria Biochem. Biophys. Acta 1327 1997 119 130 (Pubitemid 27283405)
-
(1997)
Biochimica et Biophysica Acta - Biomembranes
, vol.1327
, Issue.1
, pp. 119-130
-
-
Matsuzaki, K.1
Sugishita, K.-I.2
Harada, M.3
Fujii, N.4
Miyajima, K.5
-
9
-
-
0033369108
-
Candidacidal activity of shortened synthetic analogs of amoebapores and NK-lysin
-
DOI 10.1007/s004300050113
-
J. Andrä, and M. Leippe Candidacidal activity of shortened synthetic analogs of amoebapores and NK-lysin Med. Microbiol. Immunol. 188 1999 117 124 (Pubitemid 30085357)
-
(1999)
Medical Microbiology and Immunology
, vol.188
, Issue.3
, pp. 117-124
-
-
Andra, J.1
Leippe, M.2
-
10
-
-
0037716304
-
Molecular basis for membrane selectivity of NK-2, a potent peptide antibiotic derived from NK-lysin
-
DOI 10.1016/S0005-2736(03)00115-9
-
H. Schröder-Borm, R. Willumeit, K. Brandenburg, and J. Andrä Molecular basis for membrane selectivity of NK-2, a potent peptide antibiotic derived from NK-lysin Biochim. Biophys. Acta-Biomembr. 1612 2003 164 171 (Pubitemid 36629570)
-
(2003)
Biochimica et Biophysica Acta - Biomembranes
, vol.1612
, Issue.2
, pp. 164-171
-
-
Schroder-Borm, H.1
Willumeit, R.2
Brandenburg, K.3
Andra, J.4
-
11
-
-
18944367737
-
Structural rearrangement of model membranes by the peptide antibiotic NK-2
-
DOI 10.1016/j.bbamem.2005.01.011, PII S0005273605000271
-
R. Willumeit, M. Kumpugdee, S.S. Funari, K. Lohner, B.P. Navas, K. Brandenburg, S. Linser, and J. Andrä Structural rearrangement of model membranes by the peptide antibiotic NK-2 Biochim. Biophys. Acta-Biomembr. 1669 2005 125 134 (Pubitemid 40704730)
-
(2005)
Biochimica et Biophysica Acta - Biomembranes
, vol.1669
, Issue.2
, pp. 125-134
-
-
Willumeit, R.1
Kumpugdee, M.2
Funari, S.S.3
Lohner, K.4
Navas, B.P.5
Brandenburg, K.6
Linser, S.7
Andra, J.8
-
13
-
-
73149118069
-
Relative free energy of binding between antimicrobial peptides and SDS or DPC micelles
-
A. Sayyed-Ahmad, H. Khandelia, and Y.N. Kaznessis Relative free energy of binding between antimicrobial peptides and SDS or DPC micelles Mol. Simul. 35 2009 986 997
-
(2009)
Mol. Simul.
, vol.35
, pp. 986-997
-
-
Sayyed-Ahmad, A.1
Khandelia, H.2
Kaznessis, Y.N.3
-
14
-
-
42949162627
-
Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces
-
DOI 10.1073/pnas.0707879105
-
D. Horinek, A. Serr, M. Geisler, T. Pirzer, S.Q.L.U. Slotta, J.A. Garrido, T.H.T. Scheibel, and R.R. Netz Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces Proc. Natl. Acad. Sci. U. S. A. 105 2008 2842 2847 (Pubitemid 351723631)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.8
, pp. 2842-2847
-
-
Horinek, D.1
Serr, A.2
Geisler, M.3
Pirzer, T.4
Slotta, U.5
Lud, S.Q.6
Garrido, J.A.7
Scheibel, T.8
Hugel, T.9
Netz, R.R.10
-
15
-
-
61549084018
-
Interaction between amyloid-beta (1-42) peptide and phospholipid bilayers: A molecular dynamics study
-
C.H. Davis, and M.L. Berkowitz Interaction between amyloid-beta (1-42) peptide and phospholipid bilayers: a molecular dynamics study Biophys. J. 96 2009 785 797
-
(2009)
Biophys. J.
, vol.96
, pp. 785-797
-
-
Davis, C.H.1
Berkowitz, M.L.2
-
16
-
-
41149175486
-
Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane
-
31913-1-31913-11
-
V. Vivcharuk, B. Tomberli, I.S. Tolokh, and C.G. Gray Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane Phys. Rev. E 77 2008 31913-1-31913-11
-
(2008)
Phys. Rev. e
, vol.77
-
-
Vivcharuk, V.1
Tomberli, B.2
Tolokh, I.S.3
Gray, C.G.4
-
17
-
-
70349944668
-
Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on POPG membrane
-
31911-1-31911-12
-
I.S. Tolokh, V. Vivcharuk, B. Tomberli, and C.G. Gray Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on POPG membrane Phys. Rev. E 80 2009 31911-1-31911-12
-
(2009)
Phys. Rev. e
, vol.80
-
-
Tolokh, I.S.1
Vivcharuk, V.2
Tomberli, B.3
Gray, C.G.4
-
18
-
-
77749304229
-
Free energy profile of the interaction between a monomer or a dimer of protegrin-1 in a specific binding orientation and a model lipid bilayer
-
V. Vivcharuk, and Y. Kaznessis Free energy profile of the interaction between a monomer or a dimer of protegrin-1 in a specific binding orientation and a model lipid bilayer J. Phys. Chem. B 114 2010 2790 2797
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 2790-2797
-
-
Vivcharuk, V.1
Kaznessis, Y.2
-
19
-
-
70449647113
-
Membrane association and selectivity of the antimicrobial peptide NK-2: A molecular dynamics simulation study
-
J. Pimthon, R. Willumeit, A. Lendlein, and D. Hofman Membrane association and selectivity of the antimicrobial peptide NK-2: a molecular dynamics simulation study J. Pept. Sci. 15 2009 654 667
-
(2009)
J. Pept. Sci.
, vol.15
, pp. 654-667
-
-
Pimthon, J.1
Willumeit, R.2
Lendlein, A.3
Hofman, D.4
-
21
-
-
34547474332
-
The MARTINI force field: Coarse grained model for biomolecular simulations
-
DOI 10.1021/jp071097f
-
S.J. Marrink, H.J. Risselada, S. Yefimov, and A.H. de Vries The MARTINI force field: coarse grained model for biomolecular simulations J. Phys. Chem. B 111 2007 7812 7824 (Pubitemid 47169693)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.27
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
De Vries, A.H.5
-
22
-
-
49449113010
-
The MARTINI coarse-grained force field: Extension to proteins
-
L. Monticelli, S. Kandasamy, X. Periole, R.G. Larson, D.P. Tieleman, and S.J. Marrink The MARTINI coarse-grained force field: extension to proteins J. Chem. Theory Comput. 4 2008 819 834
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.J.6
-
23
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
B. Hess, H. Bekker, H.J.C. Berendsen, and J.G.E.M. Fraaije LINCS: a linear constraint solver for molecular simulations J. Comp. Chem. 18 1997 1463 1472 (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
24
-
-
33750587438
-
Molecular-dynamics with coupling to an external bath
-
H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, A. Di Nola, and J.R. Haak Molecular-dynamics with coupling to an external bath J. Chem. Phys. 81 1984 3684 3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Di Nola, A.4
Haak, J.R.5
-
25
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4 2008 435 447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
26
-
-
35748967575
-
2H NMR experiments
-
DOI 10.1007/s00249-007-0192-9
-
L.S. Vermeer, B.L. de Groot, V. Reat, A. Milon, and J. Czaplicki Acyl chain order parameter profiles in phospholipid bilayers: computation from molecular dynamics simulations and comparison with 2H NMR experiments Eur. Biophys. J. 36 2007 919 931 (Pubitemid 350045041)
-
(2007)
European Biophysics Journal
, vol.36
, Issue.8
, pp. 919-931
-
-
Vermeer, L.S.1
De Groot, B.L.2
Reat, V.3
Milon, A.4
Czaplicki, J.5
-
27
-
-
0023732144
-
Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms
-
M. Nilges, G.M. Clore, and A.M. Gronenborn Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms FEBS Lett. 239 1988 129 136
-
(1988)
FEBS Lett.
, vol.239
, pp. 129-136
-
-
Nilges, M.1
Clore, G.M.2
Gronenborn, A.M.3
-
28
-
-
77950279200
-
Interaction of an antimicrobial peptide with membranes: Experiments and simulations with NKCS
-
Y. Gofman, S. Linser, A. Rzeszutek, D. Shental-Bechor, S. Funari, N. Ben-Tal, and R. Willumeit Interaction of an antimicrobial peptide with membranes: experiments and simulations with NKCS J. Phys. Chem. B 114 2010 4230 4237
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 4230-4237
-
-
Gofman, Y.1
Linser, S.2
Rzeszutek, A.3
Shental-Bechor, D.4
Funari, S.5
Ben-Tal, N.6
Willumeit, R.7
-
29
-
-
60749090161
-
All-atom molecular dynamics simulation studies of fully hydrated gel phase DPPG and DPPE bilayers
-
J. Pimthon, R. Willumeit, A. Lendlein, and D. Hofman All-atom molecular dynamics simulation studies of fully hydrated gel phase DPPG and DPPE bilayers J. Mol. Struct. 921 2009 38 50
-
(2009)
J. Mol. Struct.
, vol.921
, pp. 38-50
-
-
Pimthon, J.1
Willumeit, R.2
Lendlein, A.3
Hofman, D.4
-
30
-
-
34250315776
-
Molecular characterization of gel and liquid-crystalline structures of fully hydrated POPC and POPE bilayers
-
DOI 10.1021/jp0686339
-
S. Leemkujorn, and A.K. Sum Molecular characterization of gel and liquid-crystalline structures of fully hydrated POPC and POPE bilayers J. Phys. Chem. B 111 2007 6026 6033 (Pubitemid 46918233)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.21
, pp. 6026-6033
-
-
Leekumjorn, S.1
Sum, A.K.2
-
32
-
-
33646446451
-
Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains
-
N. Kucerka, S. Tristram-Nagle, and J.F. Nagle Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains J. Membr. Biol. 208 2005 193 202
-
(2005)
J. Membr. Biol.
, vol.208
, pp. 193-202
-
-
Kucerka, N.1
Tristram-Nagle, S.2
Nagle, J.F.3
-
33
-
-
0027251833
-
Area lipid of bilayers from NMR
-
J.F. Nagle Area lipid of bilayers from NMR Biophys. J. 64 1993 1476 1481
-
(1993)
Biophys. J.
, vol.64
, pp. 1476-1481
-
-
Nagle, J.F.1
-
34
-
-
0024378918
-
Hydration forces between phospholipid bilayers
-
R.P. Rand, and V.A. Parsegian Hydration forces between phospholipid bilayers Biochim. Biophys. Acta 988 1989 351 376
-
(1989)
Biochim. Biophys. Acta
, vol.988
, pp. 351-376
-
-
Rand, R.P.1
Parsegian, V.A.2
-
35
-
-
42449116949
-
Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides
-
DOI 10.1073/pnas.0710625105
-
M.T. Lee, W.C. Hung, F.C. Chen, and H.W. Huang Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides Proc. Natl. Acad. Sci. U. S. A. 105 2008 5087 5092 (Pubitemid 351738514)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.13
, pp. 5087-5092
-
-
Lee, M.-T.1
Hung, W.-C.2
Chen, F.-Y.3
Huang, H.W.4
-
39
-
-
0035828630
-
On the calculation of entropy from covariance matrices of the atomic fluctuations
-
DOI 10.1063/1.1401821
-
I. Andricioaei, and M. Karplus On the calculation of entropy from covariance matrices of the atomic fluctuations J. Chem. Phys. 115 2001 6289 6292 (Pubitemid 33046603)
-
(2001)
Journal of Chemical Physics
, vol.115
, Issue.14
, pp. 6289-6292
-
-
Andricioaei, I.1
Karplus, M.2
-
40
-
-
0142185062
-
Divalent calcium ions inhibit the penetration of protamine through the polysaccharide brush of the outer membrane of gram-negative bacteria
-
D.A. Pink, L.T. Hansen, T.A. Gill, B.E. Quinn, M.H. Jericho, and T.J. Beveridge Divalent calcium ions inhibit the penetration of protamine through the polysaccharide brush of the outer membrane of gram-negative bacteria Langmuir 19 2003 8852 8858
-
(2003)
Langmuir
, vol.19
, pp. 8852-8858
-
-
Pink, D.A.1
Hansen, L.T.2
Gill, T.A.3
Quinn, B.E.4
Jericho, M.H.5
Beveridge, T.J.6
-
41
-
-
77958463973
-
Antimicrobial peptides induce growth of phosphatidylglycerol domains in a model bacterial membrane
-
A.A. Polyansky, R. Ramaswamy, P.E. Volynsky, I.F. Sbalzarini, S.J. Marrink, and R.G. Efremov Antimicrobial peptides induce growth of phosphatidylglycerol domains in a model bacterial membrane J. Phys. Chem. Lett. 1 2010 3108 3111
-
(2010)
J. Phys. Chem. Lett.
, vol.1
, pp. 3108-3111
-
-
Polyansky, A.A.1
Ramaswamy, R.2
Volynsky, P.E.3
Sbalzarini, I.F.4
Marrink, S.J.5
Efremov, R.G.6
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