Interaction of an Antimicrobial Peptide with Membranes: Experiments and Simulations with NKCS

Journal of Physical Chemistry B

Volumn 114, Issue 12, 2010, Pages 4230-4237

  Gofman, Yana ^a   Linser, Sebastian ^a   Rzeszutek, Agnieszka ^a   Shental Bechor, Dalit ^b   Funari, Sergio S ^c   Ben Tal, Nir ^b   Willumeit, Regine ^a  

^a INSTITUTE OF MATERIALS RESEARCH   (Germany)

^b TEL AVIV UNIVERSITY   (Israel)

^c DESY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEXATION; COMPUTER SIMULATION; DICHROISM; DRUG INTERACTIONS; MONTE CARLO METHODS; PEPTIDES; POLYPEPTIDES;

AMPHIPATHIC; ANTIMICROBIAL PEPTIDE; ANTIMICROBIAL POTENCY; CIRCULAR DICHROISM SPECTRA; COMPLEX BEHAVIOR; HELICITIES; HELIX STRUCTURES; HEXAGONAL PHASE; HIGH AFFINITY; MEMBRANE AFFINITY; MEMBRANE SURFACE; MONTE CARLO SIMULATION; PHOSPHOETHANOLAMINE; TRANSITION TEMPERATURE;

MEMBRANES;

EID: 77950279200     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp909154y     Document Type: Article

References (61)

1. Cohen, M. L. Science 1992, 257, 1050-1055
2. Hamilton-Miller, J. M. Int. J. Antimicrob. Agents 2004, 23, 209-212
3. Powers, J. P.; Hancock, R. E. Peptides 2003, 24, 1681-1691
4. Bush, K.; Macielag, M.; Weidner-Wells, M. Curr. Opin. Microbiol. 2004, 7, 466-476
5. Shai, Y. Curr. Pharm. Des. 2002, 8, 715-725
6. Zasloff, M. Nature 2002, 415, 389-395
7. Epand, R. M.; Shai, Y.; Segrest, J. P.; Anantharamaiah, G. M. Biopolymers 1995, 37, 319-338
8. Shai, Y. Trends Biochem. Sci. 1995, 20, 460-464
9. Shai, Y.; Oren, Z. Peptides 2001, 22, 1629-1641
10. Matsuzaki, K. Biochim. Biophys. Acta 1999, 1462, 1-10.
11. Andra, J.; Leippe, M. Med. Microbiol. Immunol. 1999, 788, 117-124
12. Jacobs, T.; Brunn, H.; Gaworski, I.; Fleischer, B.; Leippe, M. Antimicrob. Agents Chemother. 2003, 47, 607-613
13. Olak, C.; Muenter, A.; Andra, J.; Brezesinski, G. J. Pept. Sci. 2008, 14, 510-517
14. Schroder-Borm, H.; Bakalova, R.; Andra, J. FEBS Lett. 2005, 579, 6128-6134
15. Willumeit, R.; Kumpugdee, M.; Funari, S. S.; Lohner, K.; Navas, B. P.; Brandenburg, K.; Linser, S.; Andra, J. Biochim. Biophys. Acta 2005, 1669, 125-134
16. Andra, J.; Monreal, D.; Martinez de Tejada, G.; Olak, C.; Brezesinski, G.; Gomez, S. S.; Goldmann, T.; Bartels, R.; Brandenburg, K.; Moriyon, I. J. Biol. Chem. 2007, 282, 14719-14728
17. Lohner, K.; Prenner, E. J. Biochim. Biophys. Acta 1999, 1462, 141-156
18. Haris, P. I.; Chapman, D. Biopolymers 1995, 37, 251-263
19. Ladokhin, A. S.; Selsted, M. E.; White, S. H. Biophys. J. 1997, 72, 794-805.
20. Salditt;, T.; Li, C.; Spaar, A. Biochim. Biophys. Acta 2006, 1758, 1483-1498
21. Bechinger, B. Biochim. Biophys. Acta 1999, 1462, 157-183
22. Papo, N.; Shai, Y. Biochemistry 2003, 42, 458-466
23. La Rocca, P.; Biggin, P. C.; Tieleman, D. P.; Sansom, M. S. Biochim. Biophys. Acta 1999, 1462, 185-200.
24. Forrest, L. R.; Sansom, M. S. Curr. Opin. Struct. Biol. 2000, 10, 174-181
25. Kessel, A.; Cafiso, D. S.; Ben-Tal, N. Biophys. J. 2000, 78, 571-583
26. Kessel, A.; Haliloglu, T.; Ben-Tal, N. Biophys. J. 2003, 85, 3687-3695
27. Milik, M.; Skolnick, J. Proteins 1993, 15, 10-25.
28. Baumgartner, A. Biophys. J. 1996, 71, 1248-1255
29. Efremov, R. G.; Nolde, D. E.; Vergoten, G.; Arseniev, A. S. Biophys. J. 1999, 76, 2448-2459
30. Ducarme, P.; Rahman, M.; Brasseur, R. Proteins 1998, 30, 357-371
31. Maddox, M. W.; Longo, M. L. Biophys. J. 2002, 82, 244-263
32. Veresov, V. G.; Davidovskii, A. I. Eur Biophys J 2007, 37, 19-33.
33. Tzlil, S.; Murray, D.; Ben-Shaul, A. Biophys. J. 2008, 95, 1745-1757
34. Wee, C. L.; Sansom, M. S.; Reich, S.; Akhmatskaya, E. J. Phys. Chem. B 2008, 112, 5710-5717
35. Kessel, A.; Shental-Bechor, D.; Haliloglu, T.; Ben-Tal, N. Biophys. J. 2003, 85, 3431-3444
36. Shental-Bechor, D.; Kirca, S.; Ben-Tal, N.; Haliloglu, T. Biophys. J. 2005, 88, 2391-2402
37. Shental-Bechor, D.; Haliloglu, T.; Ben-Tal, N. Biophys. J. 2007, 93, 1858-1871
38. Gordon-Grossman, M.; Gofman, Y.; Zimmermann, H.; Frydman, V.; Shai, Y.; Ben-Tal, N.; Goldfarb, D. J. Phys. Chem. B 2009, 113, 12687-12695
39. Wang, X.; Quinn, P. J. Biochim. Biophys. Acta 2002, 1564, 66-72.
40. Siegel, D. P. Biophys. J. 2006, 91, 608-618
41. van den Brink-van der Laan, E.; Killian, J. A.; de Kruijff, B Biochim. Biophys. Acta 2004, 1666, 275-288
42. Ames, G. F. J. Bacteriol. 1968, 95, 833-843
43. Bishop, D. G.; Rutberg, L.; Samuelsson, B. Eur. J. Biochem. 1967, 2, 448-453
44. Koch, H. U.; Haas, R.; Fischer, W. Eur. J. Biochem. 1984, 138, 357-363
45. Matsuzaki, K.; Sugishita, K.; Ishibe, N.; Ueha, M.; Nakata, S.; Miyajima, K.; Epand, R. M. Biochemistry 1998, 37, 11856-11863
46. Hallock, K. J.; Lee, D. K.; Ramamoorthy, A. Biophys. J. 2003, 84, 3052-3060
47. Szule, J. A.; Rand, R. P. Biophys. J. 2003, 85, 1702-1712
48. Angelova, A.; Ionov, R.; Koch, M. H.; Rapp, G. Arch. Biochem. Biophys. 2000, 378, 93-106.
49. Tytler, E. M.; Segrest, J. P.; Epand, R. M.; Nie, S. Q.; Epand, R. F.; Mishra, V. K.; Venkatachalapathi, Y. V.; Anantharamaiah, G. M. J. Biol. Chem. 1993, 268, 22112-22118
50. Petrey, D.; Xiang, Z.; Tang, C. L.; Xie, L.; Gimpelev, M.; Mitros, T.; Soto, C. S.; Goldsmith-Fischman, S.; Kernytsky, A.; Schlessinger, A.; Koh, I. Y.; Alexov, E.; Honig, B. Proteins 2003, 53, 430-435
51. Blondelle, S. E.; Houghten, R. A. Pept. Res. 1991, 4, 12-18
52. Hall, K.; Mozsolits, H.; Aguilar, M. I. Lett. Pept. Sci. 2003, 10, 475-485.
53. Cooper, M. A.; Hansson, A.; Lofas, S.; Williams, D. H. Anal. Biochem. 2000, 277, 196-205.
54. Real-Time Analysis of biomolecular interactions: applications of BIACORE; Nagata, K., Handa, H., Eds.; Springer Publishing Co.: New York, 2000.
55. Boulin, C.; Kempf, R.; Koch, M. H. J.; McLaughlin, S. M. Nucl. Instrum. Methods. 1986, 249, 399-407.
56. Vie, V.; Van Mau, N.; Chaloin, L.; Lesniewska, E.; Le Grimellec, C.; Heitz, F. Biophys. J. 2000, 78, 846-856
57. Ambroggio, E. E.; Separovic, F.; Bowie, J.; Fidelio, G. D. Biochim Biophys. Acta 2004, 1664, 31-37
58. Mozsolits, H.; Thomas, W. G.; Aguilar, M. I. J. Pept. Sci. 2003, 9, 77-89.
59. Fuller, N.; Rand, R. P. Biophys. J. 2001, 87, 243-254
60. Bechinger, B.; Lohner, K. Biochim. Biophys. Acta 2006, 1758, 1529-1539
61. Unger, T.; Oren, Z.; Shai, Y. Biochemistry 2001, 40, 6388-6397