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Volumn 107, Issue 1, 2011, Pages 55-67

Genome-wide identification and characterization of the cyclin gene family in Populus trichocarpa

Author keywords

Cyclins; Expression pattern; Phylogenetic analysis; Poplar

Indexed keywords

ARABIDOPSIS; CELL CYCLE; CYCLIN-DEPENDENT KINASE; CYCLINS; EXPRESSION PATTERNS; GENE FAMILIES; GENE FUNCTION; GENOME SEQUENCES; PHYLOGENETIC ANALYSIS; PHYLOGENETIC RELATIONSHIPS; POPLAR; POPULUS; PROTEIN MOTIFS; REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTION; SEMI-QUANTITATIVE;

EID: 80052791049     PISSN: 01676857     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11240-011-9957-z     Document Type: Article
Times cited : (17)

References (49)
  • 1
    • 70349861949 scopus 로고    scopus 로고
    • Effects of β-lactam antibiotics, auxins, and cytokinins on shoot regeneration from callus cultures of two hybridaspens, Populus tremuloides × P. tremula and P. xcanescens × P. gradidentata
    • Bosela MJ (2009) Effects of β-lactam antibiotics, auxins, and cytokinins on shoot regeneration from callus cultures of two hybridaspens, Populus tremuloides × P. tremula and P. xcanescens × P. gradidentata. Plant Cell Tissue Organ Cult 98: 249-261.
    • (2009) Plant Cell Tissue Organ Cult , vol.98 , pp. 249-261
    • Bosela, M.J.1
  • 2
    • 0029789637 scopus 로고    scopus 로고
    • The proteolysis of mitotic cyclins in mammalian cells persists from the end of mitosis until the onset of S phase
    • Brandeis M, Hunt T (1996) The proteolysis of mitotic cyclins in mammalian cells persists from the end of mitosis until the onset of S phase. EMBOJ 15: 5280-5289.
    • (1996) Emboj , vol.15 , pp. 5280-5289
    • Brandeis, M.1    Hunt, T.2
  • 3
    • 76149133633 scopus 로고    scopus 로고
    • Micropropagation of Populus trichocarpa 'Nisqually-1': the genotype deriving the Populus reference genome
    • Byung-guk K, Lori O, Dean K, Gerald AT, Zong MC (2009) Micropropagation of Populus trichocarpa 'Nisqually-1': the genotype deriving the Populus reference genome. Plant Cell Tissue Organ Cult 99: 251-257.
    • (2009) Plant Cell Tissue Organ Cult , vol.99 , pp. 251-257
    • Byung-Guk, K.1    Lori, O.2    Dean, K.3    Gerald, A.T.4    Zong, M.C.5
  • 4
    • 0034776576 scopus 로고    scopus 로고
    • Novel strategies to study the role of mutation and nucleic acid structure in evolution
    • Caetano-Anollés G (2001) Novel strategies to study the role of mutation and nucleic acid structure in evolution. Plant Cell Tissue Organ Cult 67: 115-132.
    • (2001) Plant Cell Tissue Organ Cult , vol.67 , pp. 115-132
    • Caetano-Anollés, G.1
  • 5
    • 0036246956 scopus 로고    scopus 로고
    • Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures
    • Caroline R, Magali L, Dirk I, Lieven DV (2002) Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures. Plant Cell Tissue Organ Cult 69: 167-176.
    • (2002) Plant Cell Tissue Organ Cult , vol.69 , pp. 167-176
    • Caroline, R.1    Magali, L.2    Dirk, I.3    Lieven, D.V.4
  • 6
    • 2442517979 scopus 로고    scopus 로고
    • Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    • Chaw SM, Chang CC, Chen HL, Li WH (2004) Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. J Mol Evol 58: 424-441.
    • (2004) J Mol Evol , vol.58 , pp. 424-441
    • Chaw, S.M.1    Chang, C.C.2    Chen, H.L.3    Li, W.H.4
  • 7
    • 33748699804 scopus 로고    scopus 로고
    • Patterns of B-type cyclin gene expression during adventitious rooting of micropropagated cork oak
    • Clélia N, Paul H, Sara A (2006) Patterns of B-type cyclin gene expression during adventitious rooting of micropropagated cork oak. Plant Cell Tissue Organ Cult 86: 367-374.
    • (2006) Plant Cell Tissue Organ Cult , vol.86 , pp. 367-374
    • Clélia, N.1    Paul, H.2    Sara, A.3
  • 9
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 10
    • 0020961333 scopus 로고
    • Cyclin: a protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division
    • Evans T, Rosenthal ET, Youngblom J, Distel D, Hunt T (1983) Cyclin: a protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division. Cell 33: 389-396.
    • (1983) Cell , vol.33 , pp. 389-396
    • Evans, T.1    Rosenthal, E.T.2    Youngblom, J.3    Distel, D.4    Hunt, T.5
  • 11
    • 0026089183 scopus 로고
    • Cyclin is degraded by the ubiquitin pathway
    • Glotzer M, Murray AW, Kirschner MW (1991) Cyclin is degraded by the ubiquitin pathway. Nature 349: 132-138.
    • (1991) Nature , vol.349 , pp. 132-138
    • Glotzer, M.1    Murray, A.W.2    Kirschner, M.W.3
  • 12
    • 34249774911 scopus 로고    scopus 로고
    • Genome-wide identification and expression analysis of rice cell cycle genes
    • Guo J, Song J, Wang F, Zhang XS (2007) Genome-wide identification and expression analysis of rice cell cycle genes. Plant Mol Biol 64: 349-360.
    • (2007) Plant Mol Biol , vol.64 , pp. 349-360
    • Guo, J.1    Song, J.2    Wang, F.3    Zhang, X.S.4
  • 13
    • 0032080930 scopus 로고    scopus 로고
    • Isolation and characterization of a functional A-type cyclin from maize
    • Hsieh WL, Wolniak SM (1998) Isolation and characterization of a functional A-type cyclin from maize. Plant Mol Biol 37: 121-129.
    • (1998) Plant Mol Biol , vol.37 , pp. 121-129
    • Hsieh, W.L.1    Wolniak, S.M.2
  • 15
    • 15444373117 scopus 로고    scopus 로고
    • Green light for the cell cycle
    • Inzé D (2005) Green light for the cell cycle. EMBO J 24: 657-662.
    • (2005) EMBO J , vol.24 , pp. 657-662
    • Inzé, D.1
  • 16
    • 0034866735 scopus 로고    scopus 로고
    • G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factors
    • Ito M, Araki S, Matsunaga S, Itoh T, Nishihama R, Machida Y, Doonan JH, Watanabe A (2001) G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factors. Plant Cell 13: 1891-1905.
    • (2001) Plant Cell , vol.13 , pp. 1891-1905
    • Ito, M.1    Araki, S.2    Matsunaga, S.3    Itoh, T.4    Nishihama, R.5    Machida, Y.6    Doonan, J.H.7    Watanabe, A.8
  • 17
    • 0042148926 scopus 로고
    • Cellular responses of leaf explants of Cocos nucifera L. in vitro
    • Jesty JHF, Francis D (1992) Cellular responses of leaf explants of Cocos nucifera L. in vitro. Plant Cell Tissue Organ Cult 28: 235-244.
    • (1992) Plant Cell Tissue Organ Cult , vol.28 , pp. 235-244
    • Jesty, J.H.F.1    Francis, D.2
  • 18
    • 0034979838 scopus 로고    scopus 로고
    • Cyclin/CDK complexes: their involvement in cell cyclin progression and mitotic division
    • John PCL, Mews M, Moore R (2001) Cyclin/CDK complexes: their involvement in cell cyclin progression and mitotic division. Protoplasma 216: 119-142.
    • (2001) Protoplasma , vol.216 , pp. 119-142
    • John, P.C.L.1    Mews, M.2    Moore, R.3
  • 19
    • 0029347188 scopus 로고
    • Distinct classes of mitotic cyclins are differentially expressed in the soybean shoot apex during the cell cycle
    • Kouchi H, Sekine M, Hata S (1995) Distinct classes of mitotic cyclins are differentially expressed in the soybean shoot apex during the cell cycle. Plant Cell 7: 1143-1155.
    • (1995) Plant Cell , vol.7 , pp. 1143-1155
    • Kouchi, H.1    Sekine, M.2    Hata, S.3
  • 21
    • 0031741136 scopus 로고    scopus 로고
    • Ectopic expression of cdc2/cdc28 kinase subunit Homo sapiens 1 Uncouples Cyclin B metabolism from the mitotic spindle cell cycle checkpoint
    • Mary LH, Ana IF, Mark WW, Antonio G (1998) Ectopic expression of cdc2/cdc28 kinase subunit Homo sapiens 1 Uncouples Cyclin B metabolism from the mitotic spindle cell cycle checkpoint. Mol Cell Biol 18: 6224-6237.
    • (1998) Mol Cell Biol , vol.18 , pp. 6224-6237
    • Mary, L.H.1    Ana, I.F.2    Mark, W.W.3    Antonio, G.4
  • 23
    • 0033768802 scopus 로고    scopus 로고
    • Therole and regulation of D-type cyclins in the plant cell cycle
    • Meijer M, Murray JAH (2000) Therole and regulation of D-type cyclins in the plant cell cycle. Plant Mol Biol 43: 621-633.
    • (2000) Plant Mol Biol , vol.43 , pp. 621-633
    • Meijer, M.1    Murray, J.A.H.2
  • 24
    • 0036829989 scopus 로고    scopus 로고
    • Cell cycle-regulated gene expression in Arabidopsis
    • Menges M, Hennig L, Gruissem W, Murray JA (2002) Cell cycle-regulated gene expression in Arabidopsis. J Biol Chem 277: 41987-42002.
    • (2002) J Biol Chem , vol.277 , pp. 41987-42002
    • Menges, M.1    Hennig, L.2    Gruissem, W.3    Murray, J.A.4
  • 25
    • 1342266280 scopus 로고    scopus 로고
    • Genome-wide gene expression in an Arabidopsis cell suspension
    • Menges M, Hennig L, Gruissem W, Murray JA (2003) Genome-wide gene expression in an Arabidopsis cell suspension. Plant Mol Biol 53: 423-442.
    • (2003) Plant Mol Biol , vol.53 , pp. 423-442
    • Menges, M.1    Hennig, L.2    Gruissem, W.3    Murray, J.A.4
  • 26
    • 37249019525 scopus 로고    scopus 로고
    • Genomic organization and evolutionary conservation of plant D-type cyclins
    • Menges M, Pavesi G, Morandini P, Bogre L, Murray JAH (2007) Genomic organization and evolutionary conservation of plant D-type cyclins. Plant Physiol 145: 1558-1576.
    • (2007) Plant Physiol , vol.145 , pp. 1558-1576
    • Menges, M.1    Pavesi, G.2    Morandini, P.3    Bogre, L.4    Murray, J.A.H.5
  • 27
    • 64549103427 scopus 로고    scopus 로고
    • Comparative analysis of microbial genomes to study unique and expanded gene families in Mycobacterium tuberculosis
    • Mulder N, Rabiu H, Jamieson G, Vuppu V (2009) Comparative analysis of microbial genomes to study unique and expanded gene families in Mycobacterium tuberculosis. Infect Genet Evol 9: 314-321.
    • (2009) Infect Genet Evol , vol.9 , pp. 314-321
    • Mulder, N.1    Rabiu, H.2    Jamieson, G.3    Vuppu, V.4
  • 28
    • 70350278612 scopus 로고    scopus 로고
    • Regulation of expression of D3-type cyclins and ADP-glucose pyrophosphorylase genes by sugar, cytokinin and ABA in sweet potato (Ipomoea batatas Lam.)
    • Nagata T, Saitou K (2009) Regulation of expression of D3-type cyclins and ADP-glucose pyrophosphorylase genes by sugar, cytokinin and ABA in sweet potato (Ipomoea batatas Lam.). Plant Prod Sci 12: 434-442.
    • (2009) Plant Prod Sci , vol.12 , pp. 434-442
    • Nagata, T.1    Saitou, K.2
  • 29
    • 0036671611 scopus 로고    scopus 로고
    • Phosphorylation of retinoblastoma-related protein by the cyclinD/cyclin-dependent kinase complex is activated at the G1/S-phase transition in tobacco
    • Nakagami H, Kawamura K, Sugisaka K, Sekine M, Shinmyo A (2002) Phosphorylation of retinoblastoma-related protein by the cyclinD/cyclin-dependent kinase complex is activated at the G1/S-phase transition in tobacco. Plant Cell 14: 1847-1857.
    • (2002) Plant Cell , vol.14 , pp. 1847-1857
    • Nakagami, H.1    Kawamura, K.2    Sugisaka, K.3    Sekine, M.4    Shinmyo, A.5
  • 30
  • 31
    • 0029317904 scopus 로고
    • Cyclin-dependent protein kinases: key regulators of the eukaryotic cell cycle
    • Nigg EA (1995) Cyclin-dependent protein kinases: key regulators of the eukaryotic cell cycle. BioEssays 17: 471-480.
    • (1995) BioEssays , vol.17 , pp. 471-480
    • Nigg, E.A.1
  • 32
    • 0025916625 scopus 로고
    • Conserved structural motifs in cyclins identified by sequence-analysis
    • Nugent JH, Alfa CE, Young T, Hyams JS (1991) Conserved structural motifs in cyclins identified by sequence-analysis. J Cell Sci 99: 669-674.
    • (1991) J Cell Sci , vol.99 , pp. 669-674
    • Nugent, J.H.1    Alfa, C.E.2    Young, T.3    Hyams, J.S.4
  • 33
    • 0025246110 scopus 로고
    • Universal control mechanism regulating onset of M-phase
    • Nurse P (1990) Universal control mechanism regulating onset of M-phase. Nature 344: 503-508.
    • (1990) Nature , vol.344 , pp. 503-508
    • Nurse, P.1
  • 35
    • 0036163745 scopus 로고    scopus 로고
    • Regulation of cyclin-CDK activity in mammalian cells
    • Obaya AJ, Sedivy JM (2002) Regulation of cyclin-CDK activity in mammalian cells. Cell Mol Life Sci 59: 126-142.
    • (2002) Cell Mol Life Sci , vol.59 , pp. 126-142
    • Obaya, A.J.1    Sedivy, J.M.2
  • 36
    • 0032300175 scopus 로고    scopus 로고
    • Cell cycle-dependent proteolysis in plants: identification of the destruction box pathway and metaphase arrest produced by the proteasome inhibitor MG132
    • Pascal G, Marie CC, Yves P, Aude D, Jacqueline F (1998) Cell cycle-dependent proteolysis in plants: identification of the destruction box pathway and metaphase arrest produced by the proteasome inhibitor MG132. Plant Cell 10: 2063-2075.
    • (1998) Plant Cell , vol.10 , pp. 2063-2075
    • Pascal, G.1    Marie, C.C.2    Yves, P.3    Aude, D.4    Jacqueline, F.5
  • 37
    • 0029000579 scopus 로고
    • Cyclins and cyclin-dependent kinases: a biochemical view
    • Pines J (1995) Cyclins and cyclin-dependent kinases: a biochemical view. Biochem J 308: 697-711.
    • (1995) Biochem J , vol.308 , pp. 697-711
    • Pines, J.1
  • 38
    • 2542626016 scopus 로고    scopus 로고
    • Differential stability of Arabidopsis D-type cyclins: CYCD3; 1 is a highly unstable protein degraded by a proteasome-dependent mechanism
    • Planchais S, Samland AK, Murray JAH (2004) Differential stability of Arabidopsis D-type cyclins: CYCD3; 1 is a highly unstable protein degraded by a proteasome-dependent mechanism. Plant J 38: 616-625.
    • (2004) Plant J , vol.38 , pp. 616-625
    • Planchais, S.1    Samland, A.K.2    Murray, J.A.H.3
  • 39
    • 0033598830 scopus 로고    scopus 로고
    • The protein kinases of Caenorhabditis elegans: a model for signal transductionin multicellular organisms
    • Plowman GD, Sudarsanam S, Bingham J, Whyte D, Hunter T (1999) The protein kinases of Caenorhabditis elegans: a model for signal transductionin multicellular organisms. Proc Natl Acad Sci USA 96: 13603-13610.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 13603-13610
    • Plowman, G.D.1    Sudarsanam, S.2    Bingham, J.3    Whyte, D.4    Hunter, T.5
  • 40
    • 0029301446 scopus 로고
    • Identification of a cell cycle-related gene, cyclin, in Nicotiana tabacum (L.)
    • Qin LX, Richard L, Perennes C, Gadal P, Bergounioux C (1995) Identification of a cell cycle-related gene, cyclin, in Nicotiana tabacum (L.). Plant Physiol 108: 425-426.
    • (1995) Plant Physiol , vol.108 , pp. 425-426
    • Qin, L.X.1    Richard, L.2    Perennes, C.3    Gadal, P.4    Bergounioux, C.5
  • 41
    • 0028239065 scopus 로고
    • Cloning of four cyclins from maize indicates that higher plants have three structurally distinct groups of mitotic cyclins
    • Renaudin JP, Colasanti J, Rime H, Yuan Z et al (1994) Cloning of four cyclins from maize indicates that higher plants have three structurally distinct groups of mitotic cyclins. Proc Natl Acad Sci USA 91: 7375-7379.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 7375-7379
    • Renaudin, J.P.1    Colasanti, J.2    Rime, H.3    Yuan, Z.4
  • 43
    • 0029107653 scopus 로고
    • A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif
    • Soni R, Carmichael JP, Shah ZH, Murray JAH (1995) A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif. Plant Cell 7: 85-103.
    • (1995) Plant Cell , vol.7 , pp. 85-103
    • Soni, R.1    Carmichael, J.P.2    Shah, Z.H.3    Murray, J.A.H.4
  • 45
    • 33646477736 scopus 로고    scopus 로고
    • Hepatitis B surface antigen expression in transgenic tobacco (Nicotiana tabacum) plants using four different expression cassettes
    • Sunil Kumar GB, Srinivas L, Ganapathi TR, Bapat VA (2006) Hepatitis B surface antigen expression in transgenic tobacco (Nicotiana tabacum) plants using four different expression cassettes. Plant Cell Tissue Organ Culture 84: 315-323.
    • (2006) Plant Cell Tissue Organ Culture , vol.84 , pp. 315-323
    • Sunil Kumar, G.B.1    Srinivas, L.2    Ganapathi, T.R.3    Bapat, V.A.4
  • 46
    • 34547781750 scopus 로고    scopus 로고
    • MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 49
    • 3042527699 scopus 로고    scopus 로고
    • Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins
    • Wang G, Kong H, Sun Y, Zhang X, Zhang W, Altman N, de Pamphilis CW, Ma H (2004) Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins. Plant Physiol 135: 1084-1099.
    • (2004) Plant Physiol , vol.135 , pp. 1084-1099
    • Wang, G.1    Kong, H.2    Sun, Y.3    Zhang, X.4    Zhang, W.5    Altman, N.6    de Pamphilis, C.W.7    Ma, H.8


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