Molecular analysis of eight SFB alleles and a new SFB-like gene in Prunus pseudocerasus and Prunus speciosa

Tree Genetics and Genomes

Volumn 7, Issue 5, 2011, Pages 891-902

  Gu, Chao ^a   Wu, Jun ^a   Zhang, Shu Jun ^a   Yang, Ya Nan ^a   Wu, Hua Qing ^a   Khan, M Awais ^b   Zhang, Shao Ling ^a   Liu, Qing Zhong ^c  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c Shandong Provincial Key Laboratory of Fruit Tree Biotechnology Breeding   (China)

Author keywords

CAPS; Physical distance; Prunus pseudocerasus; Prunus speciosa; Self incompatibility; SFB; TAIL PCR

Indexed keywords

PRUNUS; PRUNUS PSEUDOCERASUS;

EID: 80052759844     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-011-0382-6     Document Type: Article

References (41)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389.
3. Anderson MA, Cornish EC, Mau SL, Williams EG, Hoggart R, Bonig I, Grego B, Simpson R, Roche PJ, Haley JD (1986) Cloning of cDNA for a stylar glycoprotein associated with expression of self-incompatibility in Nicotiana alata. Nature 321: 38-44.
4. Chung BY, Simons C, Firth AE, Brown CM, Hellens RP (2006) Effect of 5′UTR introns on gene expression in Arabidopsis thaliana. BMC Genomics 7: 120.
5. De Nettancourt D (2001) Incompatibility and incongruity in wild and cultivated plants. Springer, Berlin.
6. Deshaies RJ (1999) SCF and Cullin/Ring H2-based ubiquitin ligases. Annu Rev Cell Dev Biol 15: 435-467.
7. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry 19: 11-15.
8. Entani T, Iwano M, Shiba H, Che FS, Isogai A, Takayama S (2003) Comparative analysis of the self-incompatibility (S-) locus region of Prunus mume: identification of a pollen-expressed F-box gene with allelic diversity. Genes Cells 8: 203-213.
9. Gu C, Zhang SL, Huang SX, Heng W, Liu QZ, Wu HQ, Wu J (2010) Identification of S-genotypes in Chinese cherry cultivars (Prunus pseudocerasus LindI.). Tree Genet Genomes 6: 579-590.
10. Huang SX, Wu HQ, Li YR, Wu J, Zhang SJ, Heng W, Zhang SL (2008) Competitive interaction between two functional S-haplotypes confer self-compatibility on tetraploid Chinese cherry (Prunus pseudocerasus Lindl. CV. Nanjing Chuisi). Plant Cell Rep 27: 1075-1085.
11. Ikeda K, Igic B, Ushijima K, Yamane H, Hauck NR, Nakano R, Sassa H, Iezzoni AF, Kohn JR, Tao R (2004) Primary structural features of the S haplotype-specific F-box protein, SFB, in Prunus. Sex Plant Reprod 16: 235-243.
12. Ikeda K, Ushijima K, Yamane H, Tao R, Hauck N, Sebolt AM, Iezzoni AF (2005) Linkage and physical distances between S-haplotype S-RNase and SFB genes in sweet cherry. Sex Plant Reprod 17: 289-296.
13. Kato S, Iwata H, Tsumura Y, Mukai Y (2007) Distribution of S-alleles in island populations of flowering cherry, Prunus lannesiana var. speciosa. Genes Genet Syst 82: 65-75.
14. Lai Z, Ma W, Han B, Liang L, Zhang Y, Hong G, Xue Y (2002) An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol Biol 50: 29-42.
15. Li Q, Yin H, Li D, Zhu H, Zhang Y, Zhu W (2007) Isolation and characterization of CMO gene promoter from halophyte Suaeda liaotungensis K. J Genet Genomics 34: 355-361.
16. McClure BA, Haring V, Ebert PR, Anderson MA, Simpson RJ, Sakiyama F, Clarke AE (1989) Style self-incompatibility gene products of Nicotlana alata are ribonucleases. Nature 342: 955-957.
17. Moriya Y, Yamamoto K, Okada K, Iwanami H, Bessho H, Nakanishi T, Takasaki T (2007) Development of a CAPS marker system for genotyping European pear cultivars harboring 17 S alleles. Plant Cell Rep 26: 345-354.
18. Newbigin E, Paape T, Kohn JR (2008) RNase-based self-incompatibility: puzzled by pollen S. Plant Cell 20: 2286-2292.
19. Romero C, Vilanova S, Burgos L, Martinez-Calvo J, Vicente M, Llacer G, Badenes ML (2004) Analysis of the S-locus structure in Prunus armeniaca L. Identification of S-haplotype specific S-RNase and F-box genes. Plant Mol Biol 56: 145-157.
20. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
21. Sassa H, Nishio T, Kowyama Y, Hirano H, Koba T, Ikehashi H (1996) Self-incompatibility (S) alleles of the Rosaceae encode members of a distinct class of the T 2/S ribonuclease superfamily. Mol Gen Genet 250: 547-557.
22. Sonneveld T, Robbins TP, Bošković, R, Tobutt KR (2001) Cloning of six cherry self-incompatibility alleles and development of allele-specific PCR detection. Theor Appl Genet 102: 1046-1055.
23. Sonneveld T, Tobutt KR, Vaughan SP, Robbins TP (2005) Loss of pollen-S function in two self-compatible selections of Prunus avium is associated with deletion/mutation of an S haplotype-specific F-box gene. Plant Cell 17: 37-51.
24. Šurbanovski N, Tobutt KR, Konstantinović M, Maksimović V, Sargent DJ, Stevanović V, Bošković RI (2007) Self-incompatibility of Prunus tenella and evidence that reproductively isolated species of Prunus have different SFB alleles coupled with an identical S-RNase allele. Plant J 50: 723-734.
25. Sutherland BG, Tobutt KR, Robbins TP (2008) Trans-specific S-RNase and SFB alleles in Prunus self-incompatibility haplotypes. Mol Genet Genomics 279: 95-106.
26. Tao R, Yamane H, Sassa H, Mori H, Gradziel TM, Dandekar AM, Sugiura A (1997) Identification of stylar RNases associated with gametophytic self-incompatibility in almond (Prunus dulcis). Plant Cell Physiol 38: 304.
27. Thomson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
28. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876.
29. Tsukamoto T, Ando T, Watanabe H, Marchesi E, Kao TH (2005) Duplication of the S-locus F-box gene is associated with breakdown of pollen function in an S-haplotype identified in a natural population of self-incompatible Petunia axillaris. Plant Mol Biol 57: 141-153.
30. Ushijima K, Sassa H, Dandekar AM, Gradziel TM, Tao R, Hirano H (2003) Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism. Plant Cell 15: 771-781.
31. Ushijima K, Yamane H, Watari A, Kakehi E, Ikeda K, Hauck NR, Iezzoni AF, Tao R (2004) The S haplotype-specific F-box protein gene, SFB, is defective in self-compatible haplotypes of Prunus avium and P. mume. Plant J 39: 573-586.
32. Vaughan SP, Russell K, Sargent DJ, Tobutt KR (2006) Isolation of S-locus F-box alleles in Prunus avium and their application in a novel method to determine self-incompatibility genotype. Theor Appl Genet 112: 856-866.
33. Vieira J, Teles E, Santos RA, Vieira CP (2008) Recombination at Prunus S-locus region SLFL1 gene. Genetics 180: 483-491.
34. Vilanova S, Badenes ML, Burgos L, Martinez-Calvo J, Llacer G, Romero C (2006) Self-compatibility of two apricot selections is associated with two pollen-part mutations of different nature. Plant Physiol 142: 629.
35. Wang Y, Wang X, McCubbin AG, Kao TH (2003) Genetic mapping and molecular characterization of the self-incompatibility (S) locus in Petunia inflata. Plant Mol Biol 53: 565-580.
36. Wu J, Gu C, Zhang SL, Zhang SJ, Wu HQ, Heng W (2009) Identification of S-haplotype-specific S-RNase and SFB alleles in native Chinese apricot (Prunus armeniaca L.). J Hortic Sci Biotechnol 84: 645-652.
37. Xue Y, Carpenter R, Dickinson HG, Coen ES (1996) Origin of allelic diversity in Antirrhinum S locus RNases. Plant Cell 8: 805.
38. Yamane H, Ikeda K, Ushijima K, Sassa H, Tao R (2003a) A pollen-expressed gene for a novel protein with an F-box motif that is very tightly linked to a gene for S-RNase in two species of cherry, Prunus cerasus and P. avium. Plant Cell Physiol 44: 764.
39. Yamane H, Ushijima K, Sassa H, Tao R (2003b) The use of the S haplotype-specific F-box protein gene, SFB, as a molecular marker for S-haplotypes and self-compatibility in Japanese apricot (Prunus mume). Theor Appl Genet 107: 1357-1361.
40. Zhang SL, Huang SX, Kitashiba H, Nishio T (2007) Identification of S-haplotype-specific F-box gene in Japanese plum (Prunus salicina Lindl.). Sex Plant Reprod 20: 1-8.
41. Zhou J, Wang F, Ma W, Zhang Y, Han B, Xue Y (2003) Structural and transcriptional analysis of S-locus F-box genes in Antirrhinum. Sex Plant Reprod 16: 165-177.