메뉴 건너뛰기




Volumn 15, Issue 3, 2003, Pages 771-781

Structural and transcriptional analysis of the self-incompatibility locus of almond: Identification of a pollen-expressed F-box gene with haplotype-specific polymorphism

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; CYTOLOGY; GENES; PLANTS (BOTANY); RNA;

EID: 0242669337     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.009290     Document Type: Article
Times cited : (404)

References (51)
  • 2
    • 0030602813 scopus 로고    scopus 로고
    • SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box
    • Bai, C., Sen, P., Hofmann, K., Ma, L., Goebl, M., Harper, J.W., and Elledge, S.J. (1996). SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell 86, 263-274.
    • (1996) Cell , vol.86 , pp. 263-274
    • Bai, C.1    Sen, P.2    Hofmann, K.3    Ma, L.4    Goebl, M.5    Harper, J.W.6    Elledge, S.J.7
  • 3
    • 0030813028 scopus 로고    scopus 로고
    • An interspecific backcross of Lycopersicon esculentum L. hirsutum: Linkage analysis and a QTL study of sexual compatibility factors and floral traits
    • Bernacchi, D., and Tanksley, S.D. (1997). An interspecific backcross of Lycopersicon esculentum L. hirsutum: Linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 147, 861-877.
    • (1997) Genetics , vol.147 , pp. 861-877
    • Bernacchi, D.1    Tanksley, S.D.2
  • 4
    • 0031079653 scopus 로고    scopus 로고
    • The self-incompatibility (S) haplotypes of Brassica contain highly divergent and rearranged sequences of ancient origin
    • Boyes, D.C., Nasrallah, M.E., Vrebalov, J., and Nasrallah, J.B. (1997). The self-incompatibility (S) haplotypes of Brassica contain highly divergent and rearranged sequences of ancient origin. Plant Cell 9, 237-247.
    • (1997) Plant Cell , vol.9 , pp. 237-247
    • Boyes, D.C.1    Nasrallah, M.E.2    Vrebalov, J.3    Nasrallah, J.B.4
  • 5
    • 0035399775 scopus 로고    scopus 로고
    • Mating in mushrooms: Increasing the chances but prolonging the affair
    • Brown, A.J., and Casselton, L.A. (2001). Mating in mushrooms: Increasing the chances but prolonging the affair. Trends Genet. 17, 393-400.
    • (2001) Trends Genet. , vol.17 , pp. 393-400
    • Brown, A.J.1    Casselton, L.A.2
  • 6
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge, C., and Karlin, S. (1997). Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 8
    • 0026811981 scopus 로고
    • The flanking regions of two Petunia inflata S alleles are heterogeneous and repetitive sequences
    • Coleman, C.E., and Kao, T.-H. (1992). The flanking regions of two Petunia inflata S alleles are heterogeneous and repetitive sequences. Plant Mol. Biol. 18, 499-511.
    • (1992) Plant Mol. Biol. , vol.18 , pp. 499-511
    • Coleman, C.E.1    Kao, T.-H.2
  • 10
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • M.O. Dayhoff, ed (Washington, DC: National Biomedical Research Foundation)
    • Dayhoff, M.O., Schwartz, R.M., and Orcutt, B.C. (1979). A model of evolutionary change in proteins. In Atlas of Protein Sequence and Structure, Vol. 5, Suppl. 3, M.O. Dayhoff, ed (Washington, DC: National Biomedical Research Foundation), pp. 345-352.
    • (1979) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL. 3 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 12
    • 0033279836 scopus 로고    scopus 로고
    • SCF and cullin/RING H2-based ubiquitin ligases
    • Deshaies, R.J. (1999). SCF and cullin/RING H2-based ubiquitin ligases. Annu. Rev. Cell Dev. Biol. 15, 435-467.
    • (1999) Annu. Rev. Cell Dev. Biol. , vol.15 , pp. 435-467
    • Deshaies, R.J.1
  • 13
    • 0032803110 scopus 로고    scopus 로고
    • Pollen-expressed S-RNases are not involved in self-incompatibility in Lycopersicon peruvianum
    • Dodds, P.N., Ferguson, C., Clarke, A.E., and Newbigin, E. (1999). Pollen-expressed S-RNases are not involved in self-incompatibility in Lycopersicon peruvianum. Sex. Plant Reprod, 12, 76-87.
    • (1999) Sex. Plant Reprod. , vol.12 , pp. 76-87
    • Dodds, P.N.1    Ferguson, C.2    Clarke, A.E.3    Newbigin, E.4
  • 15
    • 0028297314 scopus 로고
    • The mating-type locus of Chlamydomonas reinhardtii contains highly rearranged DNA sequences
    • Ferris, P.J., and Goodenough, U.W. (1994). The mating-type locus of Chlamydomonas reinhardtii contains highly rearranged DNA sequences. Cell 76, 1135-1145.
    • (1994) Cell , vol.76 , pp. 1135-1145
    • Ferris, P.J.1    Goodenough, U.W.2
  • 16
    • 0024212067 scopus 로고
    • Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer
    • Frohman, M.A., Dush, M.K., and Martin, G.R. (1988). Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. USA 85, 8998-9002.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 8998-9002
    • Frohman, M.A.1    Dush, M.K.2    Martin, G.R.3
  • 17
    • 0037143725 scopus 로고    scopus 로고
    • The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis
    • Gagne, J.M., Downes, B.P., Shiu, S.-H., Durski, A.M., and Vierstra, R.D. (2002). The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc. Natl. Acad. Sci. USA 99, 11519-11524.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11519-11524
    • Gagne, J.M.1    Downes, B.P.2    Shiu, S.-H.3    Durski, A.M.4    Vierstra, R.D.5
  • 18
    • 0032814356 scopus 로고    scopus 로고
    • A molecular description of mutations affecting the pollen component of the Nicotiana alata S locus
    • Golz, J.F., Su, V., Clarke, A.E., and Newbigin, E. (1999). A molecular description of mutations affecting the pollen component of the Nicotiana alata S locus. Genetics 152, 1123-1135.
    • (1999) Genetics , vol.152 , pp. 1123-1135
    • Golz, J.F.1    Su, V.2    Clarke, A.E.3    Newbigin, E.4
  • 19
    • 0035909967 scopus 로고    scopus 로고
    • Genetic analysis of Nicotiana pollen-part mutants is consistent with the presence of an S-ribonuclease inhibitor at the S locus
    • Golz, J.F., Su, V., Oh, H.-Y., Kusaba, M., and Newbigin, E. (2001). Genetic analysis of Nicotiana pollen-part mutants is consistent with the presence of an S-ribonuclease inhibitor at the S locus. Proc. Natl. Acad. Sci. USA 98, 15372-15376.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 15372-15376
    • Golz, J.F.1    Su, V.2    Oh, H.-Y.3    Kusaba, M.4    Newbigin, E.5
  • 20
    • 0028465515 scopus 로고
    • Ribonuclease activity of Petunia inflata S proteins is essential for rejection of self-pollen
    • Huang, S., Lee, H.-S., Karunanandaa, B., and Kao, T.-H. (1994). Ribonuclease activity of Petunia inflata S proteins is essential for rejection of self-pollen. Plant Cell 6, 1021-1028.
    • (1994) Plant Cell , vol.6 , pp. 1021-1028
    • Huang, S.1    Lee, H.-S.2    Karunanandaa, B.3    Kao, T.-H.4
  • 22
    • 0002269029 scopus 로고
    • Primary structural features of the self-incompatibility protein in Solanaceae
    • Ioerger, T.R., Gohlke, J.R., Xu, B., and Kao, T.-H. (1991). Primary structural features of the self-incompatibility protein in Solanaceae. Sex. Plant Reprod. 4, 81-87.
    • (1991) Sex. Plant Reprod. , vol.4 , pp. 81-87
    • Ioerger, T.R.1    Gohlke, J.R.2    Xu, B.3    Kao, T.-H.4
  • 23
    • 0028190353 scopus 로고
    • A mutation in 'Non-pareil' almond conferring unilateral incompatibility
    • Kester, D.E., Micke, W.C., and Viveros, M. (1994). A mutation in 'Non-pareil' almond conferring unilateral incompatibility. J. Am. Soc. Hortic. Sci. 119, 1289-1292.
    • (1994) J. Am. Soc. Hortic. Sci. , vol.119 , pp. 1289-1292
    • Kester, D.E.1    Micke, W.C.2    Viveros, M.3
  • 24
    • 0035056575 scopus 로고    scopus 로고
    • Self-Incompatibility in the genus Arabidopsis: Characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana
    • Kusaba, M., Dwyer, K., Hendershot, J., Vrebalov, J., Nasrallah, J.B., and Nasrallah, M.E. (2001). Self-Incompatibility in the genus Arabidopsis: Characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana. Plant Cell 13, 627-643.
    • (2001) Plant Cell , vol.13 , pp. 627-643
    • Kusaba, M.1    Dwyer, K.2    Hendershot, J.3    Vrebalov, J.4    Nasrallah, J.B.5    Nasrallah, M.E.6
  • 25
    • 0035984358 scopus 로고    scopus 로고
    • An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum
    • Lai, Z., Ma, W., Han, B., Liang, L., Zhang, Y., Hong, G., and Xue, Y. (2002). An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol. Biol. 50, 29-42.
    • (2002) Plant Mol. Biol. , vol.50 , pp. 29-42
    • Lai, Z.1    Ma, W.2    Han, B.3    Liang, L.4    Zhang, Y.5    Hong, G.6    Xue, Y.7
  • 26
    • 0028084962 scopus 로고
    • S proteins control rejection of incompatible pollen in Petunia inflata
    • Lee, H.-S., Huang, S., and Kao, T.-H. (1994). S proteins control rejection of incompatible pollen in Petunia inflata. Nature 367, 560-563.
    • (1994) Nature , vol.367 , pp. 560-563
    • Lee, H.-S.1    Huang, S.2    Kao, T.-H.3
  • 27
    • 0031439164 scopus 로고    scopus 로고
    • An in vitro assay for assessing the effects of growth factors on Nicotiana alata pollen tubes
    • Lush, W.M., Opat, A.S., Nie, F., and Clarke, A.E. (1997). An in vitro assay for assessing the effects of growth factors on Nicotiana alata pollen tubes. Sex. Plant Reprod. 10, 351-357.
    • (1997) Sex. Plant Reprod. , vol.10 , pp. 351-357
    • Lush, W.M.1    Opat, A.S.2    Nie, F.3    Clarke, A.E.4
  • 28
    • 0034609836 scopus 로고    scopus 로고
    • S-RNase uptake by compatible pollen tubes in gametophytic self-incompatibility
    • Luu, D., Qin, X., Morse, D., and Cappadocia, M. (2000). S-RNase uptake by compatible pollen tubes in gametophytic self-incompatibility. Nature 407, 649-651.
    • (2000) Nature , vol.407 , pp. 649-651
    • Luu, D.1    Qin, X.2    Morse, D.3    Cappadocia, M.4
  • 29
    • 0035977011 scopus 로고    scopus 로고
    • Crystal structure at 1.5 Å resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility
    • Matsuura, T., Sakai, H., Unno, M., Ida, K., Sato, M., Sakiyama, F., and Norioka, S. (2001). Crystal structure at 1.5 Å resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility. J. Biol. Chem. 276, 45261-45269.
    • (2001) J. Biol. Chem. , vol.276 , pp. 45261-45269
    • Matsuura, T.1    Sakai, H.2    Unno, M.3    Ida, K.4    Sato, M.5    Sakiyama, F.6    Norioka, S.7
  • 30
    • 0031432860 scopus 로고    scopus 로고
    • Hypervariable domains of self-incompatibility RNases mediate allele-specific pollen recognition
    • Matton, D., Maes, O., Laublin, G., Xike, Q., Bertrand, C., Morse, D., and Cappadocia, M. (1997). Hypervariable domains of self-incompatibility RNases mediate allele-specific pollen recognition. Plant Cell 9, 1757-1766.
    • (1997) Plant Cell , vol.9 , pp. 1757-1766
    • Matton, D.1    Maes, O.2    Laublin, G.3    Xike, Q.4    Bertrand, C.5    Morse, D.6    Cappadocia, M.7
  • 31
    • 13044300892 scopus 로고    scopus 로고
    • Production of an S RNase with dual specificity suggests a novel hypothesis for the generation of new S alleles
    • Matton, D.P., Luu, D.T., Xike, Q., Laublin, G., O'Brien, M., Maes, O., Morse, D., and Cappadocia, M. (1999). Production of an S RNase with dual specificity suggests a novel hypothesis for the generation of new S alleles. Plant Cell 11, 2087-2097.
    • (1999) Plant Cell , vol.11 , pp. 2087-2097
    • Matton, D.P.1    Luu, D.T.2    Xike, Q.3    Laublin, G.4    O'Brien, M.5    Maes, O.6    Morse, D.7    Cappadocia, M.8
  • 32
    • 0029347145 scopus 로고
    • The S-locus of Nicotiana alata: Genomic organization and sequence analysis of two S-RNase alleles
    • Matton, D.P., Mau, S.L., Okamoto, S., Clarke, A.E., and Newbigin, E. (1995). The S-locus of Nicotiana alata: Genomic organization and sequence analysis of two S-RNase alleles. Plant Mol. Biol. 28, 847-858.
    • (1995) Plant Mol. Biol. , vol.28 , pp. 847-858
    • Matton, D.P.1    Mau, S.L.2    Okamoto, S.3    Clarke, A.E.4    Newbigin, E.5
  • 34
    • 0000820471 scopus 로고
    • Self-incompatibility in Nicotiana alata involves degradation of pollen rRNA
    • McClure, B.A., Gray, J.E., Anderson, M.A., and Clarke, A.E. (1990). Self-incompatibility in Nicotiana alata involves degradation of pollen rRNA. Nature 347, 757-760.
    • (1990) Nature , vol.347 , pp. 757-760
    • McClure, B.A.1    Gray, J.E.2    Anderson, M.A.3    Clarke, A.E.4
  • 36
    • 0030906082 scopus 로고    scopus 로고
    • A mutant S3 RNase of Petunia inflata lacking RNase activity has an allele-specific dominant negative effect on self-incompatibility interactions
    • McCubbin, A.G., Chung, Y.-Y., and Kao, T.-H. (1997). A mutant S3 RNase of Petunia inflata lacking RNase activity has an allele-specific dominant negative effect on self-incompatibility interactions. Plant Cell 9, 85-95.
    • (1997) Plant Cell , vol.9 , pp. 85-95
    • McCubbin, A.G.1    Chung, Y.-Y.2    Kao, T.-H.3
  • 37
    • 0034519205 scopus 로고    scopus 로고
    • Molecular recognition and response in pollen and pistil interactions
    • McCubbin, A.G., and Kao, T.-H. (2000). Molecular recognition and response in pollen and pistil interactions. Annu. Rev. Cell Dev. Biol. 16, 333-364.
    • (2000) Annu. Rev. Cell Dev. Biol. , vol.16 , pp. 333-364
    • McCubbin, A.G.1    Kao, T.-H.2
  • 38
    • 0033656859 scopus 로고    scopus 로고
    • Construction of a binary bacterial artificial chromosome library of Petunia inflata and the isolation of large genomic fragments linked to the self-incompatibility (S-) locus
    • McCubbin, A.G., Zuniga, C., and Kao, T.-H. (2000). Construction of a binary bacterial artificial chromosome library of Petunia inflata and the isolation of large genomic fragments linked to the self-incompatibility (S-) locus. Genome 43, 820-826.
    • (2000) Genome , vol.43 , pp. 820-826
    • McCubbin, A.G.1    Zuniga, C.2    Kao, T.-H.3
  • 39
    • 0028158230 scopus 로고
    • S-RNase expressed in transgenic Nicotiana causes S-allele-specific pollen rejection
    • Murfett, J., Atherton, T.L., Mou, B., Gasser, C.S., and McClure, B.A. (1994). S-RNase expressed in transgenic Nicotiana causes S-allele-specific pollen rejection. Nature 367, 563-566.
    • (1994) Nature , vol.367 , pp. 563-566
    • Murfett, J.1    Atherton, T.L.2    Mou, B.3    Gasser, C.S.4    McClure, B.A.5
  • 40
    • 0028301965 scopus 로고
    • Loss of a histidine residue at the active site of S-locus ribonuclease is associated with self-compatibility in Lycopersicon peruvianum
    • Royo, J., Kuntz, C., Kowyama, Y., Anderson, M., and Clarke, A.E. (1994). Loss of a histidine residue at the active site of S-locus ribonuclease is associated with self-compatibility in Lycopersicon peruvianum. Proc. Natl. Acad. Sci. USA 91, 6511-6514.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 6511-6514
    • Royo, J.1    Kuntz, C.2    Kowyama, Y.3    Anderson, M.4    Clarke, A.E.5
  • 42
    • 0030841229 scopus 로고    scopus 로고
    • Style-specific self-compatible mutation caused by deletion of the S-RNase gene in Japanese pear (Pyrus serotina)
    • Sassa, H., Hirano, H., Nishino, T., and Koba, T. (1997). Style-specific self-compatible mutation caused by deletion of the S-RNase gene in Japanese pear (Pyrus serotina). Plant J. 12, 223-227.
    • (1997) Plant J. , vol.12 , pp. 223-227
    • Sassa, H.1    Hirano, H.2    Nishino, T.3    Koba, T.4
  • 43
    • 0033228157 scopus 로고    scopus 로고
    • CapSelect: A highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs
    • Schmidt, M.W., and Mueller, M.W. (1999). CapSelect: A highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs. Nucleic Acids Res. 27, e31.
    • (1999) Nucleic Acids Res. , vol.27
    • Schmidt, M.W.1    Mueller, M.W.2
  • 46
    • 0031104987 scopus 로고    scopus 로고
    • Identification of stylar RNases associated with gametophytic self-incompatibility in almond (Prunus dulcis)
    • Tao, R., Yamane, H., Sassa, H., Mori, H., Gradziel, T.M., Dandekar, A.M., and Sugiura, A. (1997). Identification of stylar RNases associated with gametophytic self-incompatibility in almond (Prunus dulcis). Plant Cell Physiol. 38, 304-311.
    • (1997) Plant Cell Physiol. , vol.38 , pp. 304-311
    • Tao, R.1    Yamane, H.2    Sassa, H.3    Mori, H.4    Gradziel, T.M.5    Dandekar, A.M.6    Sugiura, A.7
  • 47
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997). The CLUSTAL X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 48
    • 0026776175 scopus 로고
    • The S locus of flowering plants: When self-rejection is self-interest
    • Thompson, R.D., and Kirch, H.H. (1992). The S locus of flowering plants: When self-rejection is self-interest. Trends Genet. 8, 381-387.
    • (1992) Trends Genet. , vol.8 , pp. 381-387
    • Thompson, R.D.1    Kirch, H.H.2
  • 49
    • 0025855236 scopus 로고
    • Investigation of a self-compatible mutation in Solanum tuberosum clones inhibiting S-allele activity in pollen differentially
    • Thompson, R.D., Uhrig, H., Hermsen, J.G.T., Salamini, F., and Kaufmann, H. (1991). Investigation of a self-compatible mutation in Solanum tuberosum clones inhibiting S-allele activity in pollen differentially. Mol. Gen. Genet. 226, 283-288.
    • (1991) Mol. Gen. Genet. , vol.226 , pp. 283-288
    • Thompson, R.D.1    Uhrig, H.2    Hermsen, J.G.T.3    Salamini, F.4    Kaufmann, H.5
  • 50
    • 0035023527 scopus 로고    scopus 로고
    • Characterization of the S-locus region of almond (Prunus dulcis): Analysis of a somaclonal mutant and a cosmid contig for an S haplotype
    • Ushijima, K., Sassa, H., Kusaba, M., Tao, R., Tamura, M., Gradziel, T.M., Dandekar, A.M., and Hirano, H. (2001). Characterization of the S-locus region of almond (Prunus dulcis): Analysis of a somaclonal mutant and a cosmid contig for an S haplotype. Genetics 158, 379-386.
    • (2001) Genetics , vol.158 , pp. 379-386
    • Ushijima, K.1    Sassa, H.2    Kusaba, M.3    Tao, R.4    Tamura, M.5    Gradziel, T.M.6    Dandekar, A.M.7    Hirano, H.8
  • 51
    • 0031765990 scopus 로고    scopus 로고
    • Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): Primary structural features and sequence diversity of the S-RNases in Rosaceae
    • Ushijima, K., Sassa, H., Tao, R., Yamane, H., Dandekar, A.M., Gradziel, T.M., and Hirano, H. (1998). Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): Primary structural features and sequence diversity of the S-RNases in Rosaceae. Mol. Gen. Genet. 260, 261-268.
    • (1998) Mol. Gen. Genet. , vol.260 , pp. 261-268
    • Ushijima, K.1    Sassa, H.2    Tao, R.3    Yamane, H.4    Dandekar, A.M.5    Gradziel, T.M.6    Hirano, H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.