Complete mitochondrial genome sequence of the phytopathogenic fungus Penicillium digitatum and comparative analysis of closely related species

FEMS Microbiology Letters

Volumn 323, Issue 1, 2011, Pages 29-34

  Sun, Xuepeng ^a   Li, Hongye ^a   Yu, Dongliang ^b  

^a ZHEJIANG UNIVERSITY   (China)

^b HANGZHOU NORMAL UNIVERSITY   (China)

Author keywords

Comparative genomics; mtDNA; Penicillium; Phytopathogen

Indexed keywords

MITOCHONDRIAL PROTEIN; PROTEIN ATP6; PROTEIN ATP8; PROTEIN ATP9; PROTEIN COX1; PROTEIN COX2; PROTEIN COX3; PROTEIN CYTB; PROTEIN NAD1; PROTEIN NAD2; PROTEIN NAD3; PROTEIN NAD4; PROTEIN NAD4L; PROTEIN NAD5; PROTEIN NAD6; PROTEIN RPS5; UNCLASSIFIED DRUG;

ARTICLE; ASPERGILLUS; ASPERGILLUS NIGER; ASPERGILLUS TUBINGENSIS; ATP9 GENE; COMPARATIVE STUDY; CONTROLLED STUDY; COX1 GENE; COX3 GENE; CYTB GENE; EXON; FUNGAL GENE; FUNGAL STRAIN; GENE SEQUENCE; GENETIC POLYMORPHISM; INTRON; MITOCHONDRIAL GENOME; NAD1 GENE; NAD2 GENE; NAD3 GENE; NAD6 GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PENICILLIUM CHRYSOGENUM; PENICILLIUM DIGITATUM; PENICILLIUM MARNEFFEI; PRIORITY JOURNAL; RNL GENE; RNS GENE;

ASPERGILLUS; CLUSTER ANALYSIS; DNA, FUNGAL; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; GENOME, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PENICILLIUM; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

ASPERGILLUS; FUNGI; PENICILLIUM; PENICILLIUM DIGITATUM;

EID: 80052751662     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2011.02358.x     Document Type: Article

References (18)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Delcher AL, Harmon D, Kasif S, White O & Salzberg SL (1999) Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27: 4636-4641.
3. Droby S, Cohen L, Daus A, Weiss B, Horev B, Chalutz E, Katz H, Keren-Tzur M & Shachnai A (1998) Commercial testing of aspire: a yeast preparation for the biological control of postharvest decay of citrus. Biol Control 12: 97-101.
4. El-Ghaouth A, Smilanick JL & Wilson CL (2000) Enhancement of the performance of Candida saitoana by the addition of glycolchitosan for the control of postharvest decay of apple and citrus fruit. Postharvest Biol Tech 19: 103-110.
5. Forster H, Kanetis L & Adaskaveg JE (2004) Spiral gradient dilution, a rapid method for determining growth responses and 50% effective concentration values in fungus-fungicide interactions. Phytopathology 94: 163-170.
6. Grasso V, Palermo S, Sierotzki H, Garibaldi A & Gisi U (2006) Cytochrome b gene structure and consequences for resistance to Qo inhibitor fungicides in plant pathogens. Pest Manag Sci 62: 465-472.
7. Juhasz A, Laday M, Gacser A, Kucsera J, Pfeiffer I, Kevei F & Hamari Z (2004) Mitochondrial DNA organisation of the mtDNA type 2b of Aspergillus tubingensis compared to the Aspergillus niger mtDNA type 1a. FEMS Microbiol Lett 241: 119-126.
8. Juhasz A, Pfeiffer I, Keszthelyi A, Kucsera J, Vagvolgyi C & Hamari Z (2008) Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b. FEMS Microbiol Lett 281: 51-57.
9. Kanetis L, Forster H & Adaskaveg JE (2007) Comparative efficacy of the new postharvest fungicides azoxystrobin, fludioxonil, and pyrimethanil for managing citrus green mold. Plant Dis 91: 1502-1511.
10. Lowe TM & Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
11. Macarisin D, Cohen L, Eick A, Rafael G, Belausov E, Wisniewski M & Droby S (2007) Penicillium digitatum suppresses production of hydrogen peroxide in host tissue during infection of citrus fruit. Phytopathology 97: 1491-1500.
12. McInerney JO (1998) GCUA: general codon usage analysis. Bioinformatics 14: 372-373.
13. Paquin B, Laforest MJ, Forget L, Roewer I, Wang Z, Longcore J & Lang BF (1997) The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr Genet 31: 380-395.
14. Sambrook J & Russell D (2001) Preparation and analysis of eukaryotic genomic DNA. Molecular Cloning: A Laboratory Manual. (Argentine J, ed), pp. 461-512. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
15. Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
16. Wang JY & Li HY (2008) Agrobacterium tumefaciens-mediated genetic transformation of the phytopathogenic fungus Penicillium digitatum. J Zhejiang Univ Sci B 9: 823-828.
17. Woo PC, Zhen H, Cai JJ et al. (2003) The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts. FEBS Lett 555: 469-477.
18. Zhang Z, Zhu Z, Ma Z & Li H (2009) A molecular mechanism of azoxystrobin resistance in Penicillium digitatum UV mutants and a PCR-based assay for detection of azoxystrobin-resistant strains in packing- or store-house isolates. Int J Food Microbiol 131: 157-161.