On the origin of the woody buckwheat Fagopyrum tibeticum (=Parapteropyrum tibeticum) in the Qinghai-Tibetan Plateau

Molecular Phylogenetics and Evolution

Volumn 61, Issue 2, 2011, Pages 515-520

  Tian, Xinmin ^a   Luo, Jian ^b   Wang, Ailan ^c   Mao, Kangshan ^a   Liu, Jianquan ^a  

^a LANZHOU UNIVERSITY   (China)

^b Tibet Agriculture and Animal Husbandry University   (China)

^c LUDONG UNIVERSITY   (China)

Author keywords

Atraphaxideae; Fagopyrum; Insular woodiness; Parapteropyrum; Phylogeny

Indexed keywords

CHLOROPLAST DNA; PLANT DNA; RIBOSOMAL SPACER DNA;

ARTICLE; ASIA; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; EVOLUTION; FAGOPYRUM; GENETICS; PHYLOGENY;

ASIA, CENTRAL; BIOLOGICAL EVOLUTION; CELL NUCLEUS; DNA, CHLOROPLAST; DNA, PLANT; DNA, RIBOSOMAL SPACER; FAGOPYRUM; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

FAGOPYRUM; MAGNOLIOPHYTA; POLYGONACEAE;

EID: 80052716966     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.07.001     Document Type: Article

References (62)

1. Ballard H.E., Sytsma K.J. Evolution and biogeography of the woody Hawaiian violets (Viola, Violaceae): arctic origins, herbaceous ancestry and bird dispersal. Evolution 2000, 54:1521-1532.
2. Bao B.J., Li A.R. A study of the genus Atraphaxis in China and the system of Atraphaxideae (Polygonaceae). Acta Phytotax. Sin. 1993, 31(2):127-139.
3. Böhle U.R., Hilger H.H., Martin W.F. Island colonization and evolution of the insular woody habit in Echium L. (Boraginaceae). Proc. Natl. Acad. Sci. USA 1996, 93:11740-11745.
4. Carlquist S. Hawaii, A Natural History: Geology, Climate, Native Flora and Fauna Above the Shoreline 1970, Pacific Tropical Botanical Garden, Lawai, HI.
5. Carlquist S. Island Biology 1974, Columbia Univ. Press, New York.
6. Carlquist S. Wood anatomy of Polygonaceae: analysis of a family with exceptional wood diversity. Bot. J. Linn. Soc. 2003, 141:25-51.
7. Chen Q.F. A study of resources of Fagopyrum (Polygonaceae) native to China. Bot. J. Linn. Soc. 1999, 130:53-64.
8. Darwin C. The Origin of Species by Means of Natural Selection 1859, John Murray, London.
9. Doyle J.J., Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
10. Drummond A.J., Ho S.Y., Rawlence N., Rambaut A. A Rough Guide to BEAST 1.4 2007, University of Auckland, Auckland, New Zealand.
11. Farris J.S., Kallersjo M., Kluge A.G., Bult C. Testing significance of incongruence. Cladistics 1995, 10:315-319.
12. Fay M.F., Swensen S.M., Chase M.W. Taxonomic affinities of Medusagyne oppositifolia (Medusagynaceae). Kew Bull. 1997, 52:111-120.
13. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
14. Friesen N., Fritsch R.M., Pollner S., Blattner F.R. Molecular and morphological evidence for an origin of the aberrant genus Milula within Himalayan species of Allium (Alliaceae). Mol. Phylogenet. Evol. 2000, 17:209-218.
15. Givnish T.J. Adaptive radiation of plants on oceanic islands: classical patterns, molecular data, new insights. Evolution on Islands 1998, 281-304. Oxford Univ. Press, Oxford, UK. P. Grant (Ed.).
16. Givnish T.J., Kendra M.C., Mast A.R., Paterson T.B., Theim T.J., Hipp A.L., Henss J.M., Smith J.F., Kenneth R., Wood K.R., Sytsma K.J. Origin, adaptive radiation and diversification of the Hawaiian lobeliads (Asterales: Campanulaceae). Proc. Roy. Soc. B 2009, 276:407-416.
17. Guindon S., Cascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
18. Harrison T.M., Copeland P., Kidd W.S.F., Yin A. Raising Tibet. Science 1992, 255:1663-1670.
19. Hong S.P. Pollen morphology of Parapteropyrum and some putatively related genera (Polygonaceae-Atraphaxideae). Grana 1995, 34:153-159.
20. Hong S.P. Systematic significance of tepal surface morphology in tribes Persicarieae and Polygoneae (Polygonaceae). Bot. J. Linn. Soc. 1998, 127:91-116.
21. Huelsenbeck J.P., Rannala B. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 1997, 276:227-232.
22. Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
23. Hughes C., Eastwood R. Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proc. Natl. Acad. Sci. USA 2006, 103:10334-10339.
24. Kadereit J.W. Molecules and morphology, phylogenetics and genetics. Bot. Acta 1994, 107:369-373.
25. Lamb-Frye A.S., Kron K.A. RbcL phylogeny and character evolution in Polygonaceae. Syst. Bot. 2003, 28(2):326-332.
26. Li A.R. Parapteropyrum A. J. Li-Unum genus novum Polygonacearum sinicum. Acta Phytotax. Sin. 1981, 19:330-331.
27. Li A.R. Flora Republicae Popularis Sinicae 1998, Science Press, Beijing.
28. Li J.J., Shi Y.F., Li B.Y. Uplift of the Qinghai-Xizang (Tibet) Plateau and Global Change 1995, Lanzhou University Press, Lanzhou.
29. Liedo M.D., Crespo M.B., Cameron K.M., Fay M.F., Chase M.W. Systematics of Plumbaginaceae based upon cladistic analysis of rbcL sequence data. Syst. Bot. 1998, 23:21-29.
30. Liu J.Q., Chen Z.D., Lu A.M. The phylogenetic relationships of the Qinghai-Tibet endemic Sinadoxa, revealed by the ITS data. Acta Phytotax. Sin. 2000, 42:656-658.
31. Liu J.Q., Wang Y.J., Wang A.L., Hideaki O., Abbott R.J. Radiation and diversification within the Ligularia-Cremanthodium-Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau. Mol. Phylogenet. Evol. 2006, 38:31-49.
32. Maddison, W.P., Maddison, D.R. 2004. Mesquite: A Modular System for Evolutionary Analysis, Version 1.01. (accessed April 2004). http://mesquiteproject.org.
33. Mao Z.M., Yang G., Wang C.G. Studies on chromosome number and anatomy of young branches of Calligonum of Xinjiang in relation to the evolution of some species of the genus. Acta Phytotax. Sin. 1983, 21:44-48.
34. Ohnishi O. Search for the wild ancestor of buckwheat I. Description of new Fagopyrum (Polygonaceae) species and their distribution in China and the Himalayan hills. Fagopyrum 1998, 15:18-28.
35. Ohnishi O., Matsuoka Y. Search for the wild ancestor of buckwheat II. Taxonomy of Fagopyrum (Polygonaceae) species based on morphology, isozymes and cpDNA variability. Genes Genet. Syst. 1996, 71:383-390.
36. Ohsako T., Ohnishi O. Intra- and interspecific phylogeny of wild Fagopyrum (Polygonaceae) species based on nucleotide sequences of noncoding regions in chloroplast DNA. Am. J. Bot. 2000, 87:573-582.
37. Panero J.L., Francisco-Ortega J., Jansen R.K., Santos-Guerra A. Molecular evidence for multiple origins of woodiness and a New World biogeographic connection of the Macaronesian Island endemic Pericallis (Asteraceae: Senecioneae). Proc. Natl. Acad. Sci. USA 1999, 96(24):13886-13891.
38. Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-881.
39. Pryer K.M., Schneider H., Smith A.R., Cranfill R., Wolf P.G., Hunt J.S., Sipes S.D. Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature 2001, 409:618-622.
40. Richardson J.E., Pennington R.T., Pennington T.D., Hollingsworth P.M. Rapid diversification of a species-rich genus of neotropical rain forest trees. Science 2001, 293:2242-2245.
41. Saiki R.K., Celfand D.H., Stoffel S., Scharf S.J., Higuchi R., Horn G.T., Mullis K.B., Erlich H.H.A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 1988, 239:487-491.
42. Sanchez A., Schuster T.M., Kron K.A. A large-scale phylogeny of Polygonaceae based on molecular data. Int. J. Plant Sci. 2009, 1708:1044-1055.
43. Sanchez A., Schuster T.M., Burke J.M., Kron K.A. Taxonomy of Polygonoideae (Polygonaceae): a new tribal classification. Taxon 2011, 60:151-160.
44. Shi Y.F., Li J.J., Li B.Y. Uplift and Environmental Changes of Qinghai-Tibetan Plateau in the Late Cenozoic 1998, Guangdong Science and Technology Press, Guangzhou.
45. Spicer R.A., Harris N.B.W., Widdowson M., Herman A.B., Guo S., Valdes P.J., Wolfe J.A., Kelley S.P. Constant elevation of southern Tibet over the past 15 million years. Nature 2003, 421:622-624.
46. Sun H. Tethys retreat and Himalayas-Hengduanshan Mountains uplift and their significance on the origin and development of the Sino-Himalayan elements and alpine flora. Acta Bot. Yunnan. 2002, 24:273-288.
47. Swofford, D.L., 2002. paup*: Phylogenetic Analyses Using Parsimony (* and Other Methods), Version 4. Sinauer & Associates, Sunderland, MA.
48. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) v755 software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
49. Tavakkoli S., Osaloo S.K., Maassoumi A.A. Morphological cladistic analysis of Calligonum and Pteropyrum (Polygonaceae) in Iran. Iran. J. Biotechnol. 2008, 14:117-125.
50. Tavakkoli S., Osaloo S.K., Maassoumi A.A. The phylogeny of Calligonum and Pteropyrum (Polygonaceae) based on nuclear ribosomal DNA ITS and chloroplast trnL-F sequences. Iran. J. Biotechnol. 2010, 8:7-15.
51. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. Clustal-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 1997, 25:4876-4882.
52. Tian X.M., Liu R.R., Tian B., Liu J.Q. Karyological studies of Parapteropyrum and Atraphaxis (Polygonaceae). Caryologia 2009, 62(4):261-266.
53. Tu T.Y., Volis S., Dilon M.O., Sun H., Wen J. Dispersals of Hyoscyameae and Mandragoreae (Solanaceae) from the New World to Eurasia in the early Miocene and their biogeographic diversification within Eurasia. Mol. Phylogenet. Evol. 2010, 57:1226-1237.
54. Wallace A.R. Tropical Nature and Other Essays 1878, Macmillan, London.
55. Wang A.L., Yang M.H., Liu J.Q. Molecular phylogeny, recent Radiation and evolution of gross morphology of the rhubarb genus Rheum (Polygonaceae) inferred from chloroplast DNA trnL-F sequence. Ann. Bot. 2005, 96:489-498.
56. Wang Y.J., Susanna A., Von Raab.-Straube., Milne R., Liu J.Q. Island-like radiation of Saussurea (Asteraceae: Cardueae) triggered by uplift of the Qinghai-Tibet Plateau. Biol. J. Linn. Soc. 2009, 97:893-903.
57. White, T.J., Birns, T., Lee, S., Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes fro phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J., White, T.J. (Eds.), PCR Protocols: A Guide to Methods and Applications, pp. 315-322.
58. Wu Y. The floristic characteristics in the region of Bayan Har Mountains. Acta Bot. Yunnan. 2004, 26:587-603.
59. Yasui Y., Ohnishi O. Interspecific relationships in Fagopyrum (Polygonaceae) revealed by the nucleotide sequences of the rbcL and accD genes and their intergenic region. Am. J. Bot. 1998, 85:1134-1142.
60. Yasui Y., Ohnishi O. Phylogenetic relationships among Fagopyrum species revealed by the nucleotide sequences of the ITS region of the nuclear rRNA gene. Genes Genet. Syst. 1998, 73:201-210.
61. Zhang J.W., Nie Z.L., Wen J., Sun H. Molecular phylogeny and biogeography of three closely related genera Soroseris, Stebbinsia, and Syncalathium (Asteraceae, Cichorieae) endemic to the Tibetan Plateau, SW China. Taxon 2011, 60:1-12.
62. Zurawski G., Clegg M.T. Evolution of higher-plant chloroplast DNA-coded genes: implications for structure-function, phylogenetic studies. Ann. Rev. Plant Physiol. 1987, 38:391-418.