Cabomba as a model for studies of early angiosperm evolution

Annals of Botany

Volumn 108, Issue 4, 2011, Pages 589-598

  Vialette Guiraud, Aurelie C M ^a   Alaux, Michael ^b   Legeai, Fabrice ^c   Finet, Cedric ^a,f   Chambrier, Pierre ^a   Brown, Spencer C ^d   Chauvet, Aurelie ^a   Magdalena, Carlos ^e   Rudall, Paula J ^e   Scutt, Charles P ^a  

^a UNIVERSITÉ DE LYON   (France)

^b CEMAGREF   (France)

^c UMR BiO3P   (France)

^d INSTITUT DES SCIENCES DU VÉGÉTAL   (France)

^e ROYAL BOTANIC GARDENS   (United Kingdom)

^f UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

ANA grade; angiosperm; c value; Cabomba; Cabombaceae; EST; evo devo; expressed sequence tags; flowering plant evolution; Hydatellaceae; in situ hybridization; Nymphaeales; Trithuria

Indexed keywords

ANGIOSPERM; AQUATIC PLANT; BIOLOGICAL DEVELOPMENT; CLADISTICS; COMMON ANCESTRY; CRETACEOUS; DATABASE; DIVERGENCE; EVOLUTIONARY BIOLOGY; FLOWERING; GENETIC ANALYSIS; HYBRIDIZATION; MOLECULAR ANALYSIS; MORPHOLOGY; TAXONOMY; TERRESTRIAL ENVIRONMENT;

ARTICLE; BIOLOGICAL MODEL; EVOLUTION; FLOWER; GENETICS; GROWTH, DEVELOPMENT AND AGING; NYMPHAEACEAE; PHYLOGENY; PLANT GENOME; ULTRASTRUCTURE;

BIOLOGICAL EVOLUTION; FLOWERS; GENOME, PLANT; MODELS, BIOLOGICAL; NYMPHAEACEAE; PHYLOGENY;

AMBORELLALES; AUSTROBAILEYALES; CABOMBA; CABOMBA CAROLINIANA; CABOMBACEAE; HYDATELLACEAE; MAGNOLIOPHYTA; NYMPHAEALES; TRITHURIA;

EID: 80052672010     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcr088     Document Type: Article

References (67)

1. Albert VA, Soltis DE, Carlson JE, et al. 2005. Floral gene resources from basal angiosperms for comparative genomics research. BMC Plant Biology 5: 5. doi:10.1186/1471-2229-5-5.
2. Bateman RM, Hilton J, Rudall PJ. 2006. Morphological and molecular phylogenetic context of the angiosperms: Contrasting the 'top-down' and 'bottom-up' approaches used to infer the likely characteristics of the first flowers. Journal of Experimental Botany 57: 3471-3503.
3. Bennett MD, Leitch IJ. 1995. Nuclear-DNA amounts in Angiosperms. Annals of Botany 76: 113-176.
4. Bennett MD, Bhandol P, Leitch IJ. 2000. Nuclear DNA amounts in angiosperms and their modern uses - 807 new estimates. Annals of Botany 86: 859-909.
5. Bharathan G, Lambert G, Galbraith DW. 1994. Nuclear-DNA content of monocotyledons and related taxa. American Journal of Botany 81: 381-386.
6. Bogunic F, Muratovic E, Ballian D, Siljak-Yakovlev S, Brown S. 2007. Genome size stability among five subspecies of Pinus nigra Arnold s.l. Environmental & Experimental Botany 59: 354-360.
7. Bolker JA. 1995. Model systems in developmental biology. BioEssays 17: 451-455.
8. Borsch T, Löhne C, Wiersema J. 2008. Phylogeny and evolutionary patterns in Nymphaeales: Integrating genes, genomes and morphology. Taxon 57: 1052-1081.
9. Bremer B, Bremer K, Chase MW, et al. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105-121.
10. Burch-Smith TM, Anderson JC, Martin GB, Dinesh-Kumar SP. 2004. Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant Journal 39: 734-746.
11. Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. 2005. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
12. Dolezel J, Bartos J, Voglmayr H, Greilhuber J. 2003. Nuclear DNA content and genome size of trout and human. Cytometry Part A 51A: 127-128.
13. Doyle JA. 2008. Integrating molecular phylogenetic and paleobotanical evidence on the origin of the flower. International Journal of Plant Sciences 169: 816-843.
14. Eid J, Fehr A, Gray J, et al. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323: 133-138.
15. Endress PK. 2001a. Origins of flower morphology. Journal of Experimental Zoology 291: 105-115.
16. Endress PK. 2001b. The flowers in extant basal angiosperms and inferences on ancestral flowers. International Journal of Plant Sciences 162: 1111-1140.
17. Endress PK. 2004. Structure and relationships of basal relictual angiosperms. Australian Systematic Botany 17: 343-366.
18. Endress PK, Doyle JA. 2009. Reconstructing the ancestral angiosperm flower and its initial specializations. American Journal of Botany 96: 22-66.
19. Endress PK, Igersheim A. 2000. Gynoecium structure and evolution in basal angiosperms. International Journal of Plant Sciences 161: S211-S223.
20. Feild TS, Arens NC, Dawson TE. 2003. The ancestral ecology of angiosperms: Emerging perspectives from extant basal lineages. International Journal of Plant Sciences 164: S129-S142.
21. Feild TS, Arens NC, Doyle JA, Dawson TE, Donoghue MJ. 2004. Dark and disturbed: A new image of early angiosperm ecology. Paleobiology 30: 82-107.
22. Ferrandiz C, Fourquin C, Prunet N, et al. 2010. Carpel development. Advances in Botanical Research 55: 1-73.
23. Finet C, Fourquin C, Vinauger M, et al. 2010. Parallel structural evolution of auxin response factors in the angiosperms. Plant Journal 63: 952-959.
24. Fourquin C, Vinauger-Douard M, Fogliani B, Dumas C, Scutt CP. 2005. Evidence that CRABS CLAW and TOUSLED have conserved their roles in carpel development since the ancestor of the extant angiosperms. Proceedings of the National Academy of Sciences of the United States of America 102: 4649-4654.
25. Friedman WE, Ryerson KC. 2009. Reconstructing the ancestral female gametophyte of angiosperms: Insights from Amborella and other ancient lineages of flowering plants. American Journal of Botany 96: 129-143.
26. Galbraith DW, Harkins KR, Maddox JM, Ayres NM, Sharma DP, Firoozabady E. 1983. Rapid flow cytometric analysis of the cell-cycle in intact plant-tissues. Science 220: 1049-1051.
27. Grotkopp E, Rejmanek M, Sanderson MJ, Rost TL. 2004. Evolution of genome size in pines (Pinus) and its life-history correlates: Supertree analyses. Evolution 58: 1705-1729.
28. Helliwell C, Waterhouse P. 2003. Constructs and methods for highthroughput gene silencing in plants. Methods 30: 289-295.
29. Jasinski S, Vialette-Guiraud ACM, Scutt CP. 2010. The evolutionarydevelopmental analysis of plant microRNAs. Philosophical Transactions of the Royal Society B-Biological Sciences 365: 469-476.
30. Jowit J. 2010. Scientists prune list of world's plants. The Guardian (London). http://www.guardian.co.uk/science/2010/sep/19/scientists-prune- worldplant-list.
31. Kim ST, Yoo MJ, Albert VA, Farris JS, Soltis PS, Soltis DE. 2004. Phylogeny and diversification of B-function MADS-box genes in angiosperms: Evolutionary and functional implications of a 260-million-year-old duplication. American Journal of Botany 91: 2102-2118.
32. Kim S, Koh J, Yoo MJ, et al. 2005. Expression of floral MADS-box genes in basal angiosperms: Implications for the evolution of floral regulators. Plant Journal 43: 724-744.
33. Leitch IJ, Hanson L. 2002. DNA C-values in seven families fill phylogenetic gaps in the basal angiosperms. Botanical Journal of the Linnean Society 140: 175-179.
34. Löhne C, Borsch T, Wiersema JH. 2007. Phylogenetic analysis of Nymphaeales using fast-evolving and noncoding chloroplast markers. Botanical Journal of the Linnean Society 154: 141-163.
35. Löhne C, Wiersema JH, Borsch T. 2009. The unusual Ondinea, actually just another Australian water-lily of Nymphaea subg. Anecphya (Nymphaeaceae). Willdenowia 39: 55-58.
36. Marie D, Brown SC. 1993. A cytometric exercise in plant DNA histograms, with 2c-values for 70 species. Biology of the Cell 78: 41-51.
37. Moseley MF, Mehta IJ, Williamson PS, Kosakai H. 1984. Morphological-studies of the Nymphaeaceae (Sensu Lato). 13. Contributions to the vegetative and floral structure of Cabomba. American Journal of Botany 71: 902-924.
38. Nagl W, Habermann T, Fusenig HP. 1977. Nuclear-DNA contents in 4 primitive Angiosperms. Plant Systematics and Evolution 127: 103-105.
39. Nikovics K, Blein T, Peaucelle A, et al. 2006. The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 18: 2929-2945.
40. Orgaard M. 1991. The genus Cabomba (Cabombaceae) - a taxonomic study. Nordic Journal of Botany 11: 179-203.
41. Osakabe K, Osakabe Y, Toki S. 2010. Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases. Proceedings of the National Academy of Sciences of the United States of America 107: 12034-12039.
42. Prychid CJ, Sokoloff DD, Remizowa MV, Tuckett RE, Ramsay MM, Rudall PJ. 2011. Unique stigmatic hairs and pollen-tube growth within the stigmatic cell wall in the early-divergent angiosperm family Hydatellaceae. Annals of Botany 108: 599-608.
43. Qiu YL, Lee J, Whitlock BA, Bernasconi-Quadroni F, Dombrovska O. 2001. Was the ANITA rooting of the angiosperm phylogeny affected by long-branch attraction? Molecular Biology and Evolution 18: 1745-1753.
44. Qiu YL, Li LB, Hendry TA, et al. 2006. Reconstructing the basal angiosperm phylogeny: Evaluating information content of mitochondrial genes. Taxon 55: 837-856.
45. Rudall PJ, Bateman RM. 2010. Defining the limits of flowers: The challenge of distinguishing between the evolutionary products of simple versus compound strobili. Philosophical Transactions of the Royal Society B 365: 397-409.
46. Rudall PJ, Sokoloff DD, Remizowa MV, et al. 2007. Morphology of Hydatellaceae, an anomalous aquatic family recently recognized as an early-divergent angiosperm lineage. American Journal of Botany 94: 1073-1092.
47. Rudall PJ, Remizowa MV, Prenner G, Prychid CJ, Tuckett RE, Sokoloff DD. 2009a. Nonflowers near the base of extant angiosperms? Spatiotemporal arrangement of organs in reproductive units of Hydatellaceae and its bearing on the origin of the flower. American Journal of Botany 96: 67-82.
48. Rudall PJ, Eldridge T, Tratt J, et al. 2009b. Seed fertilization, development and germination in Hydatellaceae (Nymphaeales): Implications for endosperm evolution in early angiosperms. American Journal of Botany 96: 1581-1593.
49. Rudall PJ, Vergara-Silva F, Hilton J, Bateman RM. 2011. Recurrent abnormalities in conifer cones and the evolutionary origins of flower-like structures. Trends in Plant Science 16: 151-159.
50. Saarela JM, Rai HS, Doyle JA, et al. 2007. Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree. Nature 446: 312-315.
51. Schneider EL, Jeter JM. 1982. Morphological studies of the Nymphaeaceae. 12. The floral biology of Cabomba caroliniana. American Journal of Botany 69: 1410-1419.
52. Schneider EL, Tucker SC, Williamson PS. 2003. Floral development in the Nymphaeales. International Journal of Plant Sciences 164: S279-S292.
53. Schooler SS. 2008. Shade as a management tool for the invasive submerged macrophyte, Cabomba caroliniana. Journal of Aquatic Plant Management 46: 168-171.
54. Scutt CP, Vinauger-Douard M, Fourquin C, Finet C, Dumas C. 2006. An evolutionary perspective on the regulation of carpel development. Journal of Experimental Botany 57: 2143-2152.
55. Siljak-Yakovlev S, Pustahija F, Solic EM, et al. 2010. Towards a genome size and chromosome number database of Balkan flora: C-values in 343 taxa with novel values for 242. Advanced Science Letters 3: 190-213.
56. Sokoloff DD, Remizowa MV, Macfarlane TD, Rudall PJ. 2008. Classification of the early-divergent angiosperm family Hydatellaceae: One genus instead of two, four new species and sexual dimorphism in dioecious taxa. Taxon 57: 179-200.
57. Soltis DE, Albert VA, Leebens-Mack J, et al. 2008. The Amborella genome: An evolutionary reference for plant biology. Genome Biology 9: 402. doi:10.1186/gb-2008-9-3-402.
58. Tucker SC, Douglas AW. 1996. Floral structure, development, and relationships of paleoherbs: Saruma, Cabomba, Lactoris, and selected Piperales. In Taylor DW, Hickey LJ, eds. Flowering plant origin, evolution and phylogeny. New York: Chapman and Hall, 141-175.
59. Tuckett RE, Merritt DJ, Rudall PJ, et al. 2010. A new type of specialized morphophysiological dormancy and seed storage behaviour in Hydatellaceae, an early-divergent angiosperm family. Annals of Botany 105: 1053-1061.
60. Vialette-Guiraud ACM, Adam H, Finet C, Jasinski S, Jouannic S, Scutt CP. 2011. Insights from ANA-grade angiosperms into the early evolution of CUP-SHAPED COTYLEDON genes. Annals of Botany 107: 1511-1519.
61. Wang T, Uauy C, Till B, Liu CM. 2010. TILLING and associated technologies. Journal of Integrative Plant Biology 52: 1027-1030.
62. Wilson CE, Darbyshire SJ, Jones R. 2007. The biology of invasive alien plants in Canada. 7. Cabomba caroliniana A. Gray. Canadian Journal of Plant Science 87: 615-638.
63. Yamada T, Imaichi R, Kato M. 2001. Developmental morphology of ovules and seeds of Nymphaeales. American Journal of Botany 88: 963-974.
64. Yamada T, Ito M, Kato M. 2003. Expression pattern of INNER NOOUTER homologue in Nymphaea (water lily family, Nymphaeaceae). Development Genes and Evolution 213: 510-513.
65. Yoo MJ, Soltis PS, Soltis DE. 2010. Expression of floral Mads-box genes in two divergent water lilies: Nymphaeales and Nelumbo. International Journal of Plant Sciences 171: 121-146.
66. Zanis MJ, Soltis DE, Soltis PS, Mathews S, Donoghue MJ. 2002. The root of the angiosperms revisited. Proceedings of the National Academy of Sciences of the United States of America 99: 6848-6853.
67. Zonneveld BJM, Leitch IJ, Bennett MD. 2005. First nuclear DNA amounts in more than 300 angiosperms. Annals of Botany 96: 229-244.