메뉴 건너뛰기




Volumn 365, Issue 1539, 2010, Pages 469-476

The evolutionary-developmental analysis of plant microRNAs

Author keywords

Angiosperm; Carpel; Flower; Leaf dissection; MicroRNA; MiR164

Indexed keywords

ANATOMY; ANGIOSPERM; BIOLOGICAL DEVELOPMENT; COMMON ANCESTRY; EVOLUTIONARY BIOLOGY; FLOWER; GENE EXPRESSION; GENETIC ANALYSIS; PHYLOGENETICS; RNA;

EID: 76749151422     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2009.0246     Document Type: Article
Times cited : (30)

References (44)
  • 2
    • 0031153960 scopus 로고    scopus 로고
    • Genes involved in organ separation in Arabidopsis: An analysis of the cup-shaped cotyledon mutant
    • DOI 10.1105/tpc.9.6.841
    • Aida, M., Ishida, T., Fukaki, H., Fujisawa, H. & Tasaka, M. 1997 Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell 9, 841-857. (doi:10.1105/tpc.9.6.841) (Pubitemid 28173836)
    • (1997) Plant Cell , vol.9 , Issue.6 , pp. 841-857
    • Aida, M.1    Ishida, T.2    Fukaki, H.3    Fujisawa, H.4    Tasaka, M.5
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J. H., Zhang, Z., Miller, W. & Lipman, D. J. 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25, 3389-3402. (doi:10.1093/nar/25.17.3389) (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 4
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • Ambros, V. et al. 2003 A uniform system for microRNA annotation. RNA-Publ. RNA Soc. 9, 277-279.
    • (2003) RNA-Publ. RNA Soc. , vol.9 , pp. 277-279
    • Ambros, V.1
  • 5
    • 13944263944 scopus 로고    scopus 로고
    • The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis
    • DOI 10.1016/j.cub.2005.02.017
    • Baker, C. C., Sieber, P., Wellmer, F. & Meyerowitz, E. M. 2005 The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis. Curr. Biol. 15, 303-315. (doi:10.1016/j.cub.2005. 02.017) (Pubitemid 40263362)
    • (2005) Current Biology , vol.15 , Issue.4 , pp. 303-315
    • Baker, C.C.1    Sieber, P.2    Wellmer, F.3    Meyerowitz, E.M.4
  • 6
    • 34548473571 scopus 로고    scopus 로고
    • Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants
    • DOI 10.1111/j.1365-313X.2007.03197.x
    • Barakat, A., Wall, K., Leebens-Mack, J.,Wang, Y. J., Carlson, J. E. & dePamphilis, C. W. 2007 Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J. 51, 991-1003. (doi:10.1111/j.1365-313X.2007.03197.x) (Pubitemid 47373567)
    • (2007) Plant Journal , vol.51 , Issue.6 , pp. 991-1003
    • Barakat, A.1    Wall, K.2    Leebens-Mack, J.3    Wang, Y.J.4    Carlson, J.E.5    DePamphilis, C.W.6
  • 7
    • 65549111340 scopus 로고    scopus 로고
    • The NAC-domain transcription factor GOBLET specifies leaflet boundaries in compound tomato leaves
    • doi:10.1242/dev.031625
    • Berger, Y. et al. 2009 The NAC-domain transcription factor GOBLET specifies leaflet boundaries in compound tomato leaves. Development 136, 823-832. (doi:10.1242/dev.031625)
    • (2009) Development , vol.136 , pp. 823-832
    • Berger, Y.1
  • 8
    • 0037036101 scopus 로고    scopus 로고
    • Homologies in leaf form inferred from KNOXI gene expression during development
    • DOI 10.1126/science.1070343
    • Bharathan, G., Goliber, T. E., Moore, C., Kessler, S., Pham, T. & Sinha, N. R. 2002 Homologies in leaf form inferred from KNOXI gene expression during development. Science 296, 1858-1860. (doi:10.1126/science.1070343) (Pubitemid 34596270)
    • (2002) Science , vol.296 , Issue.5574 , pp. 1858-1860
    • Bharathan, G.1    Goliber, T.E.2    Moore, C.3    Kessler, S.4    Pham, T.5    Sinha, N.R.6
  • 10
    • 3843089328 scopus 로고    scopus 로고
    • Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliania and Oryza sativa identifies important target genes
    • DOI 10.1073/pnas.0404025101
    • Bonnet, E., Wuyts, J., Rouze, P. & Van de Peer, Y. 2004 Detection of 91 potential in plant conserved plant micro- RNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc. Natl Acad. Sci. USA 101, 11 511-11 516. (doi:10.1073/pnas.0404025101) (Pubitemid 39038378)
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.31 , pp. 11511-11516
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van De Peer, Y.4
  • 12
    • 41849084853 scopus 로고    scopus 로고
    • Identification and characterization of small RNAs from the phloem of Brassica napus
    • doi:10.1111/j.1365-313X.2007.03368.x
    • Buhtz, A., Springer, F., Chappell, L., Baulcombe, D. C. & Kehr, J. 2008 Identification and characterization of small RNAs from the phloem of Brassica napus. Plant J. 53, 739-749. (doi:10.1111/j.1365-313X.2007.03368.x)
    • (2008) Plant J. , vol.53 , pp. 739-749
    • Buhtz, A.1    Springer, F.2    Chappell, L.3    Baulcombe, D.C.4    Kehr, J.5
  • 13
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C. 2004 MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 1-19.
    • (2004) BMC Bioinformatics , vol.5 , pp. 1-19
    • Edgar, R.C.1
  • 14
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by micro- RNAs: Are the answers in sight?
    • Filipowicz, W., Bhattacharyya, S. N. & Sonenberg, N. 2008 Mechanisms of post-transcriptional regulation by micro- RNAs: are the answers in sight? Nat. Rev. Genet. 9, 102-114.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 15
    • 0001636184 scopus 로고
    • Pedigree diversity within the Lancaster surecrop heterotic group of maize
    • Gerdes, J. T. & Tracy, W. F. 1993 Pedigree diversity within the Lancaster surecrop heterotic group of maize. Crop Sci. 33, 334-337.
    • (1993) Crop Sci. , vol.33 , pp. 334-337
    • Gerdes, J.T.1    Tracy, W.F.2
  • 17
    • 24944510549 scopus 로고    scopus 로고
    • MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
    • DOI 10.1105/tpc.105.030841
    • Guo, H. S., Xie, Q., Fei, J. F. & Chua, N. H. 2005 Micro- RNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 17, 1376-1386. (doi:10.1105/tpc.105.030841) (Pubitemid 43138191)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1376-1386
    • Guo, H.-S.1    Xie, Q.2    Fei, J.-F.3    Chua, N.-H.4
  • 19
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • DOI 10.1007/BF02101694
    • Hasegawa, M., Kishino, H. & Yano, T. A. 1985 Dating of the human ape splitting by a molecular clock of mitochondrial- DNA. J. Mol. Evol. 22, 160-174. (doi:10.1007/BF02101694) (Pubitemid 16227864)
    • (1985) Journal of Molecular Evolution , vol.22 , Issue.2 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 20
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • DOI 10.1186/1471-2148-4-18
    • Jobb, G., von Haeseler, A. & Strimmer, K. 2004 TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 4, 18. (doi:10.1186/1471-2148-4-18) (Pubitemid 40205271)
    • (2004) BMC Evolutionary Biology , vol.4 , pp. 18
    • Jobb, G.1    Von Haeseler, A.2    Strimmer, K.3
  • 21
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA
    • DOI 10.1016/j.molcel.2004.05.027, PII S1097276504003284
    • Jones-Rhoades, M. W. & Bartel, D. P. 2004 Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 14, 787-799. (doi:10.1016/j.molcel.2004.05.027) (Pubitemid 38780852)
    • (2004) Molecular Cell , vol.14 , Issue.6 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 22
    • 33645525893 scopus 로고    scopus 로고
    • MicroRNAs and their regulatory roles in plants
    • DOI 10.1146/annurev.arplant.57.032905.105218
    • Jones-Rhoades, M. W., Bartel, D. P. & Bartel, B. 2006 MicroRNAs and their regulatory roles in plants. Annu. Rev. Plant Biol. 57, 19-53. (doi:10.1146/annurev.arplant.57.032905.105218) (Pubitemid 44061017)
    • (2006) Annual Review of Plant Biology , vol.57 , pp. 19-53
    • Jones-Rhoades, M.W.1    Bartel, D.P.2    Bartel, B.3
  • 23
    • 60749101298 scopus 로고    scopus 로고
    • Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis
    • doi:10.1126/science.1166386
    • Kim, J. H., Woo, H. R., Kim, J., Lim, P. O., Lee, I. C., Choi, S. H., Hwang, D. & Nam, H. G. 2009 Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science 323, 1053-1057. (doi:10.1126/science.1166386)
    • (2009) Science , vol.323 , pp. 1053-1057
    • Kim, J.H.1    Woo, H.R.2    Kim, J.3    Lim, P.O.4    Lee, I.C.5    Choi, S.H.6    Hwang, D.7    Nam, H.G.8
  • 24
    • 4444275405 scopus 로고    scopus 로고
    • MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
    • DOI 10.1242/dev.01320
    • Laufs, P., Peaucelle, A., Morin, H. & Traas, J. 2004 Micro- RNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development 131, 4311-4322. (doi:10.1242/dev.01320) (Pubitemid 39276198)
    • (2004) Development , vol.131 , Issue.17 , pp. 4311-4322
    • Laufs, P.1    Peaucelle, A.2    Morin, H.3    Traas, J.4
  • 25
    • 27644566867 scopus 로고    scopus 로고
    • Computational detection of microRNAs targeting transcription factor genes in Arabidopsis thaliana
    • doi:10.1016/j.compbiolchem.2005.08.005
    • Li, X. & Zhang, Y. Z. 2005 Computational detection of microRNAs targeting transcription factor genes in Arabidopsis thaliana. Comput. Biol. Chem. 29, 360-367. (doi:10.1016/j.compbiolchem.2005.08.005)
    • (2005) Comput. Biol. Chem. , vol.29 , pp. 360-367
    • Li, X.1    Zhang, Y.Z.2
  • 26
    • 18844373063 scopus 로고    scopus 로고
    • Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
    • doi:10.1111/j.1745-7270.2005.00012.x
    • Li, Y., Li, W. & Jin, Y. X. 2005 Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa. Acta Biochim. Biophys. Sinica 37, 75-87. (doi:10.1111/j.1745-7270.2005.00012.x)
    • (2005) Acta Biochim. Biophys. Sinica , vol.37 , pp. 75-87
    • Li, Y.1    Li, W.2    Jin, Y.X.3
  • 27
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • DOI 10.1038/ng1791, PII N1791
    • Mallory, A. C. & Vaucheret, H. 2006 Functions of micro- RNAs and related small RNAs in plants. Nat. Genet. 38, S31-S36. (doi:10.1038/ng1791) (Pubitemid 43920941)
    • (2006) Nature Genetics , vol.38 , Issue.SUPPL. 1
    • Mallory, A.C.1    Vaucheret, H.2
  • 28
    • 33747878547 scopus 로고    scopus 로고
    • Characterization of five microRNA families in maize
    • DOI 10.1093/jxb/erl013
    • Mica, E., Gianfranceschi, L. & Pe, M. E. 2006 Characterizationof five microRNA families in maize. J. Exp. Bot. 57, 2601-2612. (doi:10.1093/jxb/ erl013) (Pubitemid 44290293)
    • (2006) Journal of Experimental Botany , vol.57 , Issue.11 , pp. 2601-2612
    • Mica, E.1    Gianfranceschi, L.2    Pe, M.E.3
  • 29
    • 33845791014 scopus 로고    scopus 로고
    • The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis
    • DOI 10.1105/tpc.106.045617
    • Nikovics, K., Blein, T., Peaucelle, A., Ishida, T., Morin, H., Aida, M. & Laufs, P. 2006 The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 18, 2929-2945. (doi:10.1105/tpc.106.045617) (Pubitemid 46013267)
    • (2006) Plant Cell , vol.18 , Issue.11 , pp. 2929-2945
    • Nikovics, K.1    Blein, T.2    Peaucelle, A.3    Ishida, T.4    Morin, H.5    Aida, M.6    Laufs, P.7
  • 31
    • 0026296420 scopus 로고
    • The genus Cabomba (Cabombaceae)-a taxonomic study
    • doi:10.1111/j.1756-1051.1991.tb01819.x
    • Orgaard, M. 1991 The genus Cabomba (Cabombaceae)-a taxonomic study. Nordic J. Bot. 11, 179-203. (doi:10.1111/j.1756-1051.1991.tb01819.x)
    • (1991) Nordic J. Bot. , vol.11 , pp. 179-203
    • Orgaard, M.1
  • 32
    • 34247398398 scopus 로고    scopus 로고
    • Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis
    • DOI 10.1242/dev.02774
    • Peaucelle, A., Morin, H., Traas, J. & Laufs, P. 2007 Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis. Development 134, 1045-1050. (doi:10.1242/dev.02774) (Pubitemid 46630072)
    • (2007) Development , vol.134 , Issue.6 , pp. 1045-1050
    • Peaucelle, A.1    Morin, H.2    Traas, J.3    Laufs, P.4
  • 33
    • 0034305497 scopus 로고    scopus 로고
    • Evo-devo: The evolution of a new discipline
    • doi:10.1038/35049594
    • Raff, R. A. 2000 Evo-devo: the evolution of a new discipline. Nat. Rev. Genet. 1, 74-79. (doi:10.1038/35049594)
    • (2000) Nat. Rev. Genet. , vol.1 , pp. 74-79
    • Raff, R.A.1
  • 34
    • 47249109497 scopus 로고    scopus 로고
    • Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana
    • DOI 10.1111/j.1365-313X.2008.03483.x
    • Raman, S., Greb, T., Peaucelle, A., Blein, T., Laufs, P. & Theres, K. 2008 Interplay of miR164 Cup-Shaped Cotyledon genes and Lateral Suppressor controls axillary meristem formation in Arabidopsis thaliana. Plant J. 55, 65-76. (doi:10.1111/j.1365-313X.2008.03483.x) (Pubitemid 351990933)
    • (2008) Plant Journal , vol.55 , Issue.1 , pp. 65-76
    • Raman, S.1    Greb, T.2    Peaucelle, A.3    Blein, T.4    Laufs, P.5    Theres, K.6
  • 35
    • 0025267792 scopus 로고
    • The general stochastic-model of nucleotide substitution
    • doi:10.1016/S0022-5193(05)80104-3
    • Rodriguez, F., Oliver, J. L., Marin, A. & Medina, J. R. 1990 The general stochastic-model of nucleotide substitution. J. Theor. Biol. 142, 485-501. (doi:10.1016/S0022-5193(05)80104-3)
    • (1990) J. Theor. Biol. , vol.142 , pp. 485-501
    • Rodriguez, F.1    Oliver, J.L.2    Marin, A.3    Medina, J.R.4
  • 36
    • 34247369438 scopus 로고    scopus 로고
    • Redundancy and specialization among plant microRNAs: Role of the MIR164 family in developmental robustness
    • DOI 10.1242/dev.02817
    • Sieber, P., Wellmer, F., Gheyselinck, J., Riechmann, J. L. & Meyerowitz, E. M. 2007 Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness. Development 134, 1051-1060. (doi:10.1242/dev.02817) (Pubitemid 46630073)
    • (2007) Development , vol.134 , Issue.6 , pp. 1051-1060
    • Sieber, P.1    Wellmer, F.2    Gheyselinck, J.3    Riechmann, J.L.4    Meyerowitz, E.M.5
  • 39
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial- DNA in humans and chimpanzees
    • Tamura, K. & Nei, M. 1993 Estimation of the number of nucleotide substitutions in the control region of mitochondrial- DNA in humans and chimpanzees. Mol. Biol. Evol. 10, 512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 40
    • 33645507429 scopus 로고    scopus 로고
    • M-Coffee: Combining multiple sequence alignment methods with T-Coffee
    • doi:10.1093/nar/gkl091
    • Wallace, I. M., O'Sullivan, O., Higgins, D. G. & Notredame, C. 2006 M-Coffee: combining multiple sequence alignment methods with T-Coffee. Nucl. Acids Res. 34, 1692-1699. (doi:10.1093/nar/gkl091)
    • (2006) Nucl. Acids Res. , vol.34 , pp. 1692-1699
    • Wallace, I.M.1    O'sullivan, O.2    Higgins, D.G.3    Notredame, C.4
  • 41
    • 0033635955 scopus 로고    scopus 로고
    • Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development
    • doi:10.1101/gad.852200
    • Xie, Q., Frugis, G., Colgan, D. & Chua, N. H. 2000 Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 14, 3024-3036. (doi:10.1101/gad.852200)
    • (2000) Genes Dev. , vol.14 , pp. 3024-3036
    • Xie, Q.1    Frugis, G.2    Colgan, D.3    Chua, N.H.4
  • 42
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • DOI 10.1111/j.1365-313X.2006.02697.x
    • Zhang, B. H., Pan, X. P., Cannon, C. H., Cobb, G. P. & Anderson, T. A. 2006a Conservation and divergence of plant microRNA genes. Plant J. 46, 243-259. (doi:10.1111/j.1365-313X.2006.02697.x) (Pubitemid 43773564)
    • (2006) Plant Journal , vol.46 , Issue.2 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 44
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker, M. 2003 Mfold web server for nucleic acid folding and hybridization prediction. Nucl. Acids Res. 31, 3406-3415. (doi:10.1093/nar/ gkg595) (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.