Sulfolobus mutants, generated via PCR products, which lack putative enzymes of UV photoproduct repair

Archaea

Volumn 2011, Issue , 2011, Pages

  Grogan, Dennis W ^a   Sakofsky, Cynthia J ^a   Runck, Laura A ^a  

^a UNIVERSITY OF CINCINNATI   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SULFOLOBUS; SULFOLOBUS ACIDOCALDARIUS;

EID: 80052662777     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2011/864015     Document Type: Article

References (35)

1. Forterre P., A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein Trends in Genetics 2002 18 5 236 238 (Pubitemid 34607131)
2. Lasken R. S., Schuster D. M., Rashtchian A., Archaebacterial DNA polymerases tightly bind uracil-containing DNA Journal of Biological Chemistry 1996 271 30 17692 17696 (Pubitemid 26250739)
3. Shuttleworth G., Fogg M. J., Kurpiewski M. R., Jen-Jacobson L., Connolly B. A., Recognition of the pro-mutagenic base uracil by family B DNA polymerases from archaea Journal of Molecular Biology 2004 337 3 621 634 (Pubitemid 38326882)
4. Sachadyn P., Conservation and diversity of MutS proteins Mutation Research 2010 694 1-2 20 30
5. White M. F., Grogan D. W., Robb F. T., Antranikian G., Antranikian G., Grogan D. W., Driessen A. J., DNA stability and repair Thermophiles: Biology and Technology at High Temperatures 2008 Boca Raton, Fla, USA CRC Press 179 187
6. Dorazi R., Gtz D., Munro S., Bernander R., White M. F., Equal rates of repair of DNA photoproducts in transcribed and non-transcribed strands in Sulfolobus solfataricus Molecular Microbiology 2007 63 2 521 529 (Pubitemid 46058937)
7. Romano V., Napoli A., Salerno V., Valenti A., Rossi M., Ciaramella M., Lack of strand-specific repair of UV-induced DNA lesions in three genes of the Archaeon Sulfolobus solfataricus Journal of Molecular Biology 2007 365 4 921 929 (Pubitemid 46014182)
8. Schmidt K. J., Beck K. E., Grogan D. W., UV stimulation of chromosomal marker exchange in Sulfolobus acidocaldarius: implications for DNA repair, conjugation and homologous recombination at extremely high temperatures Genetics 1999 152 4 1407 1415 (Pubitemid 29370324)
9. Fujihashi M., Numoto N., Kobayashi Y., Mizushima A., Tsujimura M., Nakamura A., Kawarabayasi Y., Miki K., Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: implication of a novel light-harvesting cofactor Journal of Molecular Biology 2007 365 4 903 910 (Pubitemid 46014173)
10. Grogan D. W., Photoreactivation in an archaeon from geothermal environments Microbiology 1997 143 4 1071 1076 (Pubitemid 27207775)
11. Yonemasu R., McCready S. J., Murray J. M., Osman F., Takao M., Yamamoto K., Lehmann A. R., Yasui A., Characterization of the alternative excision repair pathway of UV-damaged DNA in Schizosaccharomyces pombe Nucleic Acids Research 1997 25 8 1553 1558 (Pubitemid 27302913)
12. Earl A. M., Rankin S. K., Kim K. P., Lamendola O. N., Battista J. R., Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease Journal of Bacteriology 2002 184 4 1003 1009 (Pubitemid 34113368)
13. Sancar Z., Franklin K. A., Sancar G. B., Escherichia coli DNA photolyase stimulates uvrABC excision nuclease in vitro Proceedings of the National Academy of Sciences of the United States of America 1984 81 23 I 7397 7401 (Pubitemid 15196189)
14. Worthington P., Hoang V., Perez-Pomares F., Blum P., Targeted disruption of the -amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus Journal of Bacteriology 2003 185 2 482 488 (Pubitemid 36070474)
15. Albers S. V., Driessen A. J. M., Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome Archaea 2008 2 3 145 149
16. Deng L., Zhu H., Chen Z., Liang Y. X., She Q., Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus Extremophiles 2009 13 4 735 746
17. Hansen J. E., Dill A. C., Grogan D. W., Conjugational genetic exchange in the hyperthermophilic archaeon Sulfolobus acidocaldarius: intragenic recombination with minimal dependence on marker separation Journal of Bacteriology 2005 187 2 805 809 (Pubitemid 40096271)
18. Kurosawa N., Grogan D. W., Homologous recombination of exogenous DNA with the Sulfolobus acidocaldarius genome: properties and uses FEMS Microbiology Letters 2005 253 1 141 149 (Pubitemid 41605406)
19. Grogan D. W., Rockwood J., Discontinuity and limited linkage in the homologous recombination system of a hyperthermophilic archaeon Journal of Bacteriology 2010 192 18 4660 4668
20. Kelly D. E., Lamb D. C., Kelly S. L., Genome-wide generation of yeast gene deletion strains Comparative and Functional Genomics 2001 2 4 236 242 (Pubitemid 32815977)
21. Reilly M. S., Grogan D. W., Characterization of intragenic recombination in a hyperthermophilic archaeon via conjugational DNA exchange Journal of Bacteriology 2001 183 9 2943 2946 (Pubitemid 32319299)
22. Grogan D. W., Gunsalus R. P., Sulfolobus acidocaldarius synthesizes UMP via a standard de novo pathway: results of a biochemical-genetic study Journal of Bacteriology 1993 175 5 1500 1507 (Pubitemid 23081828)
23. Grogan D. W., Stengel K. R., Recombination of synthetic oligonucleotides with prokaryotic chromosomes: substrate requirements of the Escherichia coli / rd and Sulfolobus acidocaldarius recombination systems Molecular Microbiology 2008 69 5 1255 1265
24. Jonuscheit M., Martusewitsch E., Stedman K. M., Schleper C., A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector Molecular Microbiology 2003 48 5 1241 1252 (Pubitemid 36718219)
25. Wood E. R., Ghané F., Grogan D. W., Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light Journal of Bacteriology 1997 179 18 5693 5698 (Pubitemid 27398266)
26. Grogan D. W., Carver G. T., Drake J. W., Genetic fidelity under harsh conditions: analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius Proceedings of the National Academy of Sciences of the United States of America 2001 98 14 7928 7933 (Pubitemid 32642664)
27. Grogan D. W., Exchange of genetic markers at extremely high temperatures in the archaeon Sulfolobus acidocaldarius Journal of Bacteriology 1996 178 11 3207 3211 (Pubitemid 26169363)
28. Zheng QI., Statistical and algorithmic methods for fluctuation analysis with SALVADOR as an implementation Mathematical Biosciences 2002 176 2 237 252
29. Hall B. M., Ma C. X., Liang P., Singh K. K., Fluctuation anaLysis calculator: a web tool for the determination of mutation rate using Luria-Delbck fluctuation analysis Bioinformatics 2009 25 12 1564 1565
30. Cariello N. F., Piegorsch W. W., Adams W. T., Skopek T. R., Computer program for the analysis of mutational spectra application to p53 mutations Carcinogenesis 1994 15 10 2281 2285
31. Tanaka M., Narumi I., Funayama T., Kikuchi M., Watanabe H., Matsunaga T., Nikaido O., Yamamoto K., Characterization of pathways dependent on the uvsE, uvrA1, or uvrA2 gene product for UV resistance in Deinococcus radiodurans Journal of Bacteriology 2005 187 11 3693 3697 (Pubitemid 40705572)
32. Finn R. D., Mistry J., Tate J., Coggill P., Heger A., Pollington J. E., Gavin O. L., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E. L. L., Eddy S. R., Bateman A., The Pfam protein families database Nucleic Acids Research 2009 38 1 D211 D222
33. Ueda T., Kato A., Kuramitsu S., Terasawa H., Shimada I., Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27 Journal of Biological Chemistry 2005 280 43 36237 36243 (Pubitemid 41633896)
34. Fox M. E., Feldman B. J., Chu G., A novel role for DNA photolyase: binding to DNA damaged by drugs is associated with enhanced cytotoxicity in Saccharomyces cerevisiae Molecular and Cellular Biology 1994 14 12 8071 8077 (Pubitemid 24373555)
35. Pritchett M. A., Zhang J. K., Metcalf W. W., Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic archaea Applied and Environmental Microbiology 2004 70 3 1425 1433 (Pubitemid 38365122)