Homologous recombination of exogenous DNA with the Sulfolobus acidocaldarius genome: Properties and uses

FEMS Microbiology Letters

Volumn 253, Issue 1, 2005, Pages 141-149

  Kurosawa, Norio ^a   Grogan, Dennis W ^b  

^a SOKA UNIVERSITY   (Japan)

^b UNIVERSITY OF CINCINNATI   (United States)

Author keywords

Electroporation; Homologous recombination; Linear DNAs; Localized mutagenesis; pyrE gene; Sulfolobus acidocaldarius

Indexed keywords

AMINO ACID; DNA; OLIGONUCLEOTIDE;

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; CHROMOSOME; CODON; ELECTROPORATION; GENE DELETION; GENE SEQUENCE; GENOMICS; HOMOLOGOUS RECOMBINATION; METHYLATION; NONHUMAN; PLASMID; PRIORITY JOURNAL; SULFOLOBUS ACIDOCALDARIUS; THERMOSTABILITY;

BASE SEQUENCE; DNA METHYLATION; DNA, ARCHAEAL; DNA, RECOMBINANT; ELECTROPORATION; GENOME, ARCHAEAL; MUTAGENESIS, SITE-DIRECTED; PLASMIDS; RECOMBINATION, GENETIC; SULFOLOBUS ACIDOCALDARIUS;

BACTERIA (MICROORGANISMS); SULFOLOBUS ACIDOCALDARIUS;

EID: 27744478779     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2005.09.031     Document Type: Article

References (24)

1. Q. She, R. Singh, and F. Confalonieri Complete genome of the crenarchaeote Sulfolobus solfataricus P2 Proc. Natl. Acad. Sci. USA 98 2001 7835 7840
2. Y. Kawarabayasi, Y. Hino, and H. Horikawa Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii Strain 7 DNA Res. 8 2001 123 140
3. L. Chen, K. Brugger, M. Skovgaard, P. Redder, Q. She, E. Torarinsson, B. Greve, M. Awayez, A. Zibat, H.P. Klenk, and R.A. Garrett The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota J. Bacteriol. 187 2005 4992 4999
4. P. Worthington, V. Hoang, F. Perez-Pomares, and P. Blum Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus J. Bacteriol. 185 2003 482 488
5. T. Sato, T. Fukui, H. Atomi, and T. Imanaka Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 J. Bacteriol. 185 2002 210 220
6. J.E. Hansen, A.C. Dill, and D.W. Grogan Conjugational genetic exchange in the hyperthermophilic archaeon Sulfolobus acidocaldarius: Intragenic recombination with minimal dependence on marker separation J. Bacteriol. 187 2005 805 809
7. D.A. Prangishvili, R.P. Vashakidze, M.G. Chelidze, and I.Y. Gabriadze A restriction endonuclease SuaI from the thermoacidophilic archaebacterium Sulfolobus acidocaldarius FEBS Lett. 192 1985 57 60
8. D.W. Grogan Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeon J. Bacteriol. 185 2003 4657 4661
9. D.W. Grogan, G.T. Carver, and J.W. Drake Genetic fidelity under harsh conditions: Analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius Proc. Natl. Acad. Sci. USA 98 2001 7928 7933
10. D.W. Grogan, and J.E. Hansen Molecular characteristics of spontaneous deletions in the hyperthermophilic archaeon Sulfolobus acidocaldarius J. Bacteriol. 185 2003 1266 1272
11. K.L. Jacobs, and D.W. Grogan Rates of spontaneous mutation in an archaeon from geothermal environments J. Bacteriol. 179 1997 3298 3303
12. R. Boom, C.J.A. Sol, M.M.M. Salimans, C.L. Jansen, P.M.E. Wertheim-van-Dillen, and J. van der Noordaa Rapid and simple method for purification of nucleic acids J. Clin. Microbiol. 28 1990 495 503
13. C. Schleper, K. Kubo, and W. Zillig The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: Demonstration of infectivity and of transfection with viral DNA Proc. Natl. Acad. Sci. USA 89 1992 7645 7649
14. D. Carroll Using nucleases to stimulate homologous recombination Meth. Mol. Biol. 262 2004 195 207
15. S.A. Hill Cell to cell transmission of donor DNA overcomes differential incorporation of non-homologous and homologous markers in Neisseria gonorrhoeae Gene 240 1999 175 182
16. R.K. Conover, and W.F. Doolittle Characterization of a gene involved in histidine biosynthesis in Halobacterium (Haloferax) volcanii: Isolation and rapid mapping by transformation of an auxotroph with cosmid DNA J. Bacteriol. 172 1990 3244 3249
17. G.B. Patel, J.H.E. Nash, B.J. Agnew, and G.D. Sprott Natural and electroporation-mediated transformation of Methanococcus voltae protoplasts Appl. Environ. Microbiol. 60 1994 903 907
18. P. Gernhardt, O. Possot, M. Foglino, L. Sibold, and A. Klein Construction of an integration vector for use in the archaebacterium Methanococcus voltae and expression of a eubacterial resistance gene Mol. Gen. Genet. 221 1990 273 279
19. P. Shen, and H.V. Huang Homologous recombination in Escherichia coli: Dependence on substrate length and homology Genetics 112 1986 441 457
20. S. Jinks-Robertson, M. Michelitch, and S. Ramcharan Substrate requirements for efficient mitotic recombination in Saccharomyces cerevisiae Mol. Cell. Biol. 13 1993 3937 3950
21. R.P. Moerschell, S. Tsunasawa, and F. Sherman Transformation of yeast with synthetic oligonucleotides Proc. Natl. Acad. Sci. USA 85 1988 524 528
22. X.-T. Li, N. Constantino, L.-Y. Lu, D.-P. Liu, R.M. Watt, K.S.E. Cheah, D.L. Court, and J.-D. Huang Identification of factors influencing strand bias in oligonucleotide-mediated recombination in Escherichia coli Nucl. Acids Res. 31 2003 6674 6687
23. T. Yamamoto, R.P. Moerschell, L.P. Wakem, S. Komar-Panicucci, and F. Sherman Strand-specificity in the transformation of yeast with synthetic oligonucleotides Genetics 131 1992 811 819
24. T.-L. Thia-Toong, M. Roovers, V. Durbecq, D. Gigot, N. Glansdorff, and D. Charlier Genes of de novo pyrimidine biosynthesis from the hyperthermophilic crenarchaeote Sulfolobus acidocaldarius: novel organization in a bipolar operon J. Bacteriol. 184 2002 4430 4441