-
1
-
-
0346687595
-
The riboswitch control of bacterial metabolism
-
DOI 10.1016/j.tibs.2003.11.004
-
Nudler, E.; Mironov, A. S. The riboswitch control of bacterial metabolism. Trends Biochem. Sci. 2004, 29, 11-17. (Pubitemid 38068475)
-
(2004)
Trends in Biochemical Sciences
, vol.29
, Issue.1
, pp. 11-17
-
-
Nudler, E.1
Mironov, A.S.2
-
2
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
DOI 10.1016/j.sbi.2005.05.003, PII S0959440X05000874
-
Tucker, B. J.; Breaker, R. R. Riboswitches as versatile gene control elements. Curr. Opin. Struct. Biol. 2005, 15, 342-348. (Pubitemid 40826454)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.3 SPEC. ISS.
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
3
-
-
34247242053
-
Structures of RNA switches: Insight into molecular recognition and tertiary structure
-
DOI 10.1002/anie.200604163
-
Schwalbe, H.; Buck, J.; Furtig, B.; Noeske, J.; Wohnert, J. Structures of RNA switches: insight into molecular recognition and tertiary structure. Angew. Chem. Int. Ed. Engl. 2007, 46, 1212-1219. (Pubitemid 46981366)
-
(2007)
Angewandte Chemie - International Edition
, vol.46
, Issue.8
, pp. 1212-1219
-
-
Schwalbe, H.1
Buck, J.2
Furtig, B.3
Noeske, J.4
Wohnert, J.5
-
4
-
-
60349085695
-
Riboswitches: Ancient and promising genetic regulators
-
Blouin, S.; Mulhbacher, J.; Penedo, J. C.; Lafontaine, D. A. Riboswitches: ancient and promising genetic regulators. ChemBioChem. 2009, 10, 400-416.
-
(2009)
ChemBioChem.
, vol.10
, pp. 400-416
-
-
Blouin, S.1
Mulhbacher, J.2
Penedo, J.C.3
Lafontaine, D.A.4
-
5
-
-
67650713931
-
The structural and functional diversity of metabolite-binding riboswitches
-
Roth, A.; Breaker, R. R. The structural and functional diversity of metabolite-binding riboswitches. Annu. Rev. Biochem. 2009, 78, 305-334.
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
6
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
DOI 10.1038/nature01145
-
Winkler, W.; Nahvi, A.; Breaker, R. R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 2002, 419, 952-956. (Pubitemid 35339632)
-
(2002)
Nature
, vol.419
, Issue.6910
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
7
-
-
33745635350
-
Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
-
DOI 10.1038/nature04740, PII N04740
-
Serganov, A.; Polonskaia, A.; Phan, A. T.; Breaker, R. R.; Patel, D. J. Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 2006, 441, 1167-1171. (Pubitemid 43990739)
-
(2006)
Nature
, vol.441
, Issue.7097
, pp. 1167-1171
-
-
Serganov, A.1
Polonskaia, A.2
Phan, A.T.3
Breaker, R.R.4
Patel, D.J.5
-
8
-
-
34547116896
-
Conformational changes in the expression domain of the Escherichia coli thiM riboswitch
-
DOI 10.1093/nar/gkm300
-
Rentmeister, A.; Mayer, G.; Kuhn, N.; Famulok, M. Conformational changes in the expression domain of the Escherichia coli thiM riboswitch. Nucleic Acids Res. 2007, 35, 3713-3722. (Pubitemid 47244664)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.11
, pp. 3713-3722
-
-
Rentmeister, A.1
Mayer, G.2
Kuhn, N.3
Famulok, M.4
-
9
-
-
18744396047
-
Sensing small molecules by nascent RNA: A mechanism to control transcription in bacteria
-
DOI 10.1016/S0092-8674(02)01134-0
-
Mironov, A. S.; Gusarov, I.; Rafikov, R.; Lopez, L. E.; Shatalin, K.; Kreneva, R. A.; Perumov, D. A.; Nudler, E. Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria. Cell 2002, 111, 747-756. (Pubitemid 35446317)
-
(2002)
Cell
, vol.111
, Issue.5
, pp. 747-756
-
-
Mironov, A.S.1
Gusarov, I.2
Rafikov, R.3
Lopez, L.E.4
Shatalin, K.5
Kreneva, R.A.6
Perumov, D.A.7
Nudler, E.8
-
10
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
DOI 10.1016/S1074-5521(02)00224-7, PII S1074552102002247
-
Nahvi, A.; Sudarsan, N.; Ebert, M. S.; Zou, X.; Brown, K. L.; Breaker, R. R. Genetic control by a metabolite binding mRNA. Chem. Biol. 2002, 9, 1043-1049. (Pubitemid 35273725)
-
(2002)
Chemistry and Biology
, vol.9
, Issue.9
, pp. 1043-1049
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
11
-
-
0037058920
-
An mRNA structure that controls gene expression by binding FMN
-
DOI 10.1073/pnas.212628899
-
Winkler, W. C.; Cohen-Chalamish, S.; Breaker, R. R. An mRNA structure that controls gene expression by binding FMN. Proc. Natl. Acad. Sci. USA 2002, 99, 15908-15913. (Pubitemid 35462722)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.25
, pp. 15908-15913
-
-
Winkler, W.C.1
Cohen-Chalamish, S.2
Breaker, R.R.3
-
12
-
-
75749138167
-
Emerging applications of riboswitches in chemical biology
-
Topp, S.; Gallivan, J. P. Emerging applications of riboswitches in chemical biology. ACS Chem. Biol. 2010, 5, 139-148.
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 139-148
-
-
Topp, S.1
Gallivan, J.P.2
-
13
-
-
77952876523
-
RNA-mediated regulation in bacteria: From natural to artificial systems
-
Lioliou, E.; Romilly, C.; Romby, P.; Fechter, P. RNA-mediated regulation in bacteria: from natural to artificial systems. N. Biotechnol. 2010, 27, 222-235.
-
(2010)
N. Biotechnol.
, vol.27
, pp. 222-235
-
-
Lioliou, E.1
Romilly, C.2
Romby, P.3
Fechter, P.4
-
14
-
-
0028224199
-
High-resolution molecular discrimination by RNA
-
Jenison, R. D.; Gill, S. C.; Pardi, A.; Polisky, B. High-resolution molecular discrimination by RNA. Science 1994, 263, 1425-1429. (Pubitemid 24137828)
-
(1994)
Science
, vol.263
, Issue.5152
, pp. 1425-1429
-
-
Jenison, R.D.1
Gill, S.C.2
Pardi, A.3
Polisky, B.4
-
15
-
-
2542601538
-
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
-
DOI 10.1093/nar/gkh321
-
Suess, B.; Fink, B.; Berens, C.; Stentz, R.; Hillen, W. A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res. 2004, 32, 1610-1614. (Pubitemid 38854758)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1610-1614
-
-
Suess, B.1
Fink, B.2
Berens, C.3
Stentz, R.4
Hillen, W.5
-
16
-
-
38849166047
-
An artificial aptazyme-based riboswitch and its cascading system in E. coli
-
DOI 10.1002/cbic.200700478
-
Ogawa, A.; Maeda, M. An artificial aptazyme-based riboswitch and its cascading system in E. coli. ChemBioChem. 2008, 9, 206-209. (Pubitemid 351196787)
-
(2008)
ChemBioChem
, vol.9
, Issue.2
, pp. 206-209
-
-
Ogawa, A.1
Maeda, M.2
-
17
-
-
66249084560
-
Design principles for riboswitch function
-
Beisel, C. L.; Smolke, C. D. Design principles for riboswitch function. PLoS Comput. Biol. 2009, 5, e1000363.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Beisel, C.L.1
Smolke, C.D.2
-
18
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
DOI 10.1021/ja048634j
-
Desai, S. K.; Gallivan, J. P. Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc. 2004, 126, 13247-13254. (Pubitemid 39382751)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.41
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
19
-
-
33847039871
-
A High-Throughput Screen for Synthetic Riboswitches Reveals Mechanistic Insights into Their Function
-
DOI 10.1016/j.chembiol.2006.12.008, PII S1074552107000038
-
Lynch, S. A.; Desai, S. K.; Sajja, H. K.; Gallivan, J. P. A high-throughput screen for synthetic riboswitches reveals mechanistic insights into their function. Chem. Biol. 2007, 14, 173-184. (Pubitemid 46274427)
-
(2007)
Chemistry and Biology
, vol.14
, Issue.2
, pp. 173-184
-
-
Lynch, S.A.1
Desai, S.K.2
Sajja, H.K.3
Gallivan, J.P.4
-
20
-
-
41949098095
-
Improved aptazyme design and in vivo screening enable riboswitching in bacteria
-
Wieland, M.; Hartig, J. S. Improved aptazyme design and in vivo screening enable riboswitching in bacteria. Angew. Chem. Int. Ed. Engl. 2008, 47, 2604-2607.
-
(2008)
Angew. Chem. Int. Ed. Engl.
, vol.47
, pp. 2604-2607
-
-
Wieland, M.1
Hartig, J.S.2
-
21
-
-
58549088724
-
A flow cytometry-based screen for synthetic riboswitches
-
Lynch, S. A.; Gallivan, J. P. A flow cytometry-based screen for synthetic riboswitches. Nucleic Acids Res. 2009, 37, 184-192.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 184-192
-
-
Lynch, S.A.1
Gallivan, J.P.2
-
22
-
-
54349119816
-
A FACS-based approach to engineering artificial riboswitches
-
Fowler, C. C.; Brown, E. D.; Li, Y. A FACS-based approach to engineering artificial riboswitches. ChemBioChem. 2008, 9, 1906-1911.
-
(2008)
ChemBioChem.
, vol.9
, pp. 1906-1911
-
-
Fowler, C.C.1
Brown, E.D.2
Li, Y.3
-
23
-
-
36148970816
-
Reengineering a natural riboswitch by dual genetic selection
-
DOI 10.1021/ja076298b
-
Nomura, Y.; Yokobayashi, Y. Reengineering a natural riboswitch by dual genetic selection. J. Am. Chem. Soc. 2007, 129, 13814-13815. (Pubitemid 350106064)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.45
, pp. 13814-13815
-
-
Nomura, Y.1
Yokobayashi, Y.2
-
24
-
-
57149117140
-
Engineering complex riboswitch regulation by dual genetic selection
-
Sharma, V.; Nomura, Y.; Yokobayashi, Y. Engineering complex riboswitch regulation by dual genetic selection. J. Am. Chem. Soc. 2008, 130, 16310-16315.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 16310-16315
-
-
Sharma, V.1
Nomura, Y.2
Yokobayashi, Y.3
-
25
-
-
38849129508
-
Random walks to synthetic riboswitches - A high-throughput selection based on cell motility
-
DOI 10.1002/cbic.200700546
-
Topp, S.; Gallivan, J. P. Random walks to synthetic riboswitches-a high-throughput selection based on cell motility. ChemBioChem. 2008, 9, 210-213. (Pubitemid 351196788)
-
(2008)
ChemBioChem
, vol.9
, Issue.2
, pp. 210-213
-
-
Topp, S.1
Gallivan, J.P.2
-
26
-
-
60549087743
-
Efficient design strategy for whole-cell and cell-free biosensors based on engineered riboswitches
-
Muranaka, N.; Sharma, V.; Nomura, Y.; Yokobayashi, Y. Efficient design strategy for whole-cell and cell-free biosensors based on engineered riboswitches. Anal. Lett. 2009, 42, 108-122.
-
(2009)
Anal. Lett.
, vol.42
, pp. 108-122
-
-
Muranaka, N.1
Sharma, V.2
Nomura, Y.3
Yokobayashi, Y.4
-
27
-
-
63249090231
-
An efficient platform for genetic selection and screening of gene switches in Escherichia coli
-
Muranaka, N.; Sharma, V.; Nomura, Y.; Yokobayashi, Y. An efficient platform for genetic selection and screening of gene switches in Escherichia coli. Nucleic Acids Res. 2009, 37, e39.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Muranaka, N.1
Sharma, V.2
Nomura, Y.3
Yokobayashi, Y.4
-
28
-
-
70350523604
-
Mechanism-guided library design and dual genetic selection of synthetic OFF riboswitches
-
Muranaka, N.; Abe, K.; Yokobayashi, Y. Mechanism-guided library design and dual genetic selection of synthetic OFF riboswitches. ChemBioChem. 2009, 10, 2375-2381.
-
(2009)
ChemBioChem.
, vol.10
, pp. 2375-2381
-
-
Muranaka, N.1
Abe, K.2
Yokobayashi, Y.3
-
29
-
-
77952507419
-
Reprogramming bacteria to seek and destroy an herbicide
-
Sinha, J.; Reyes, S. J.; Gallivan, J. P. Reprogramming bacteria to seek and destroy an herbicide. Nat. Chem. Biol. 2010, 6, 464-470.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 464-470
-
-
Sinha, J.1
Reyes, S.J.2
Gallivan, J.P.3
-
30
-
-
77956324713
-
A synthetic riboswitch with chemical band-pass response
-
Muranaka, N.; Yokobayashi, Y. A synthetic riboswitch with chemical band-pass response. Chem. Commun. (Camb) 2010, 46, 6825-6827.
-
(2010)
Chem. Commun. (Camb)
, vol.46
, pp. 6825-6827
-
-
Muranaka, N.1
Yokobayashi, Y.2
-
31
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
DOI 10.1006/jmbi.1999.2700
-
Mathews, D. H.; Sabina, J.; Zuker, M.; Turner, D. H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 1999, 288, 911-940. (Pubitemid 29248642)
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.5
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
32
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31, 3406-3415. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|