Involvement of ligninolytic enzymes and Fenton-like reaction in humic acid degradation by Trametes sp.

Applied Microbiology and Biotechnology

Volumn 91, Issue 4, 2011, Pages 1131-1140

  Grinhut, Tzafrir ^a   Salame, Tomer Meir ^a   Chen, Yona ^a   Hadar, Yitzhak ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

Humic acid degradation; Humic substances; Ligninolytic enzymes; Trametes sp.

Indexed keywords

BIOLOGICAL TREATMENT; BIOSOLIDS COMPOST; BRILLIANT BLUE; EXTRACELLULAR; FENTON LIKES; HUMIC ACID; HUMIC SUBSTANCES; IN-VITRO; LACCASE ACTIVITY; LIGNINOLYTIC ENZYMES; NEGATIVE CORRELATION; ORANGE II; RATE OF REDUCTION; TRAMETES SP.;

BIOLOGICAL MATERIALS; BIOSOLIDS; BLEACHING; CATALYSTS; CLEANING; COMPOSTING; ENZYME IMMOBILIZATION; MANGANESE; MANGANESE COMPOUNDS; ORGANIC ACIDS;

DEGRADATION;

FERRIC ION; FERROUS ION; HUMIC ACID; HYDROGEN PEROXIDE; LIGNIN PEROXIDASE; LIGNINOLYTIC ENZYME; UNCLASSIFIED DRUG;

BIODEGRADATION; BLEACHING; CARBON; COMPOST; DYE; ENZYME ACTIVITY; HUMIC ACID; INOCULATION; ION; MANGANESE; MUSHROOM; NITROGEN; OBSERVATIONAL METHOD; RADICAL;

ARTICLE; BLEACHING; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; CULTURE MEDIUM; FENTON REACTION; IN VITRO STUDY; MICROBIAL DEGRADATION; NONHUMAN; PROTEIN FUNCTION; REDUCTION; TRAMETES;

AZO COMPOUNDS; BENZENESULFONATES; COENZYMES; CULTURE MEDIA; FERROUS COMPOUNDS; GLUCOSIDASES; HUMIC SUBSTANCES; MANGANESE; ROSANILINE DYES; TRAMETES;

TRAMETES;

EID: 80052608263     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3300-9     Document Type: Article

References (72)

1. 3+-reducing activity from white-rot fungi for degradation of Azure B Enzyme Microb Technol 42 17 22 10.1016/j.enzmictec.2007.07.017 1:CAS:528:DC%2BD2sXhtFGrtbzL (Pubitemid 47538732)
2. V Arantes AM Milagres TR Filley B Goodell 2011 Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions J Ind Microbiol Biothech 38 541 555 10.1007/s10295-010-0798-2 1:CAS:528:DC%2BC3MXjsFCmsLY%3D
3. P Baldrian V Valaskova 2008 Degradation of cellulose by basidiomycetous fungi FEMS Microbiol Rev 32 501 521 10.1111/j.1574-6976.2008.00106.x 1:CAS:528:DC%2BD1cXlslCrsrw%3D (Pubitemid 351538746)
4. B Berg 2000 Litter decomposition and organic matter turnover in northern forest soils For Ecol Manag 133 13 22 10.1016/S0378-1127(99)00294-7 (Pubitemid 30597733)
5. R Blondeau 1989 Biodegradation of natural and synthetic humic acids by the white rot fungus Phanerochaete chrysosporium Appl Environ Microbiol 55 1282 1285 1:CAS:528:DyaL1MXktlKgurk%3D
6. W Boerjan J Ralph M Baucher 2003 Lignin biosynthesis Annu Rev Plant Biol 54 519 546 10.1146/annurev.arplant.54.031902.134938 1:CAS:528: DC%2BD3sXntFSnsrg%3D (Pubitemid 37400004)
7. MD Cameron JD Post JD Stahl J Haselbach SD Aust 2000 Cellobiose dehydrogenase-dependent biodegradation of polyacrylate polymers by Phanerochaete chrysosporium Environ Sci Pollut Res 7 130 134 10.1065/espr2000.04.022 1:CAS:528:DC%2BD3cXmtVCjsrs%3D (Pubitemid 30620852)
8. 2+ alters peroxidase profiles and lignin degradation by the white-rot fungus Pleurotus ostreatus under different nutritional and growth conditions Appl Biochem Biotechnol 102 415 429 10.1385/ABAB:102-103:1-6:415
9. L Eggeling 1983 Lignin-an exceptional biopolymer and a rich resource? Trends Biotechnol 1 4123 4127 10.1016/0167-7799(83)90036-7
10. A Enoki S Itakura H Tanaka 1997 The involvement of extracelluar substances for reducing molecular oxygen to hydroxyl radical and ferric iron to ferrous iron in wood degradation by wood decay fungi J Biotechnol 53 265 272 10.1016/S0168-1656(97)01682-9 1:CAS:528:DyaK2sXjvVWlsbo%3D (Pubitemid 27286442)
11. RM Fakoussa PJ Frost 1999 In-vivo decolorization of coal-derived humic acids by laccase-excreting fungus Trametes versicolor Appl Microbiol Biotechnol 52 60 65 10.1007/s002530051487 1:CAS:528:DyaK1MXltlKmtbc%3D (Pubitemid 29364542)
12. RM Fakoussa M Hofrichter 1999 Biotechnology and microbiology of coal degradation Appl Microbiol Biotechnol 52 25 40 10.1007/s002530051483 1:CAS:528:DyaK1MXltlKmtbs%3D (Pubitemid 29364538)
13. LJ Forney CA Reddy M Tien SD Aust 1982 The involvement of hydroxyl radical derived from hydrogen peroxide in lignin degradation by the white rot fungus Phanerochaete chrysosporium J Biol Chem 257 1455 1462
14. JK Glenn MH Gold 1985 Purification and characterization of an extracellular Mn(II)-dependent peroxidase from the lignin-degrading basidiomycete Phanerochaete chrysosporium Arch Biochem Biophys 242 329 341 10.1016/0003-9861(85)90217-6 1:CAS:528:DyaL28XisFKr (Pubitemid 16217486)
15. V Gomez-Toribio AB Garcia-Martin MJ Martinez AT Martinez F Guillen 2009 Enhancing the production of hydroxyl radicals by Pleurotus eryngii via quinone redox cycling for pollutant removal Appl Environ Microbiol 75 3954 3962 10.1128/AEM.02138-08 1:CAS:528:DC%2BD1MXotFals78%3D
16. B Goodell J Jellison J Liu G Daniel A Paszczynski F Fekete S Krishnamurthy L Jun G Xu 1997 Low molecular weight chelators and phenolic compounds isolated from wood decay fungi and their role in the fungal biodegradation of wood J Biotechnol 53 133 162 10.1016/S0168-1656(97)01681-7 1:CAS:528:DyaK2sXjvVWntrw%3D (Pubitemid 27286436)
17. G Gramss D Ziegenhagen S Sorge 1999 Degradation of soil humic extract by wood and soil-associated fungi, bacteria, and commercial enzymes Microb Ecol 37 140 151 10.1007/s002489900138 1:CAS:528:DyaK1MXotVyluw%3D%3D (Pubitemid 29170576)
18. T Granit Y Chen Y Hadar 2007 Humic acid bleaching by white-rot fungi isolated from biosolids compost Soil Biol Biochem 39 1040 1046 10.1016/j.soilbio.2006.11.021 1:CAS:528:DC%2BD2sXisl2ru7o%3D (Pubitemid 46349196)
19. T Grinhut Y Hadar Y Chen 2007 Degradation and transformation of humic substances by saprotrophic fungi: processes and mechanisms Fungal Biol Rev 21 179 189 10.1016/j.fbr.2007.09.003 (Pubitemid 350181830)
20. T Grinhut N Hertkorn P Schmitt-Kopplin, et al. 2011 Mechanisms of humic acids degradation by white rot fungi explored using 1H NMR spectroscopy and FTICR mass spectrometry Environ Sci Technol 45 2748 2754 10.1021/es1036139 1:CAS:528:DC%2BC3MXjtFKqtL8%3D
21. 14C-xenobiotics by Phanerochaete chrysosporium Soil Biol Biochem 20 425 429 10.1016/0038-0717(88)90053-3 1:CAS:528:DyaL1MXitVyrsw%3D%3D
22. G Halliwel 1965 Catalytic decomposition of cellulose under biological conditions Biochem J 95 35 40
23. KE Hammel AN Kapich KA Jensen ZC Ryan 2002 Reactive oxygen species as agents of wood decay by fungi Enzyme Microb Technol 30 445 453 10.1016/S0141-0229(02)00011-X 1:CAS:528:DC%2BD38Xis1Oru7Y%3D (Pubitemid 34310268)
24. N Hatvani I Mecs 2002 Effect of the nutrient composition on dye decolorisation and extracellular enzyme production by Lentinus edodes on solid medium Enzyme Microb Technol 30 381 386 10.1016/S0141-0229(01)00512-9 1:CAS:528:DC%2BD38XhslWhu7Y%3D (Pubitemid 34203850)
25. JI Hedges G Eglinton PG Hatcher DL Kirchman C Arnosti S Derenne RP Evershed I Kögel-Knabner JW de Leeuw R Littke W Michaelis J Rullkötter 2000 The molecularly-uncharacterized component of nonliving organic matter in natural environments Org Geochem 31 945 958 10.1016/S0146-6380(00)00096-6 1:CAS:528:DC%2BD3cXosVGiur4%3D
26. G Henriksson LM Zhang P Ljungquist T Reitberger T Pettersson G Johansson 2000 Is cellobiose dehydrogenase from Phanerochaete chrysosporium a lignin degrading enzyme? Biochim Biophys Acta Prot Struct Mol Enzymol 1480 83 91 10.1016/S0167-4838(00)00096-0 1:CAS:528:DC%2BD3cXks12qt7g%3D (Pubitemid 30427388)
27. DS Hibbett MJ Donoghue 2001 Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes Syst Biol 50 215 242 10.1080/10635150151125879 1:STN:280:DC%2BD38zntVOgsA%3D%3D
28. M Hofrichter W Fritsche 1996 Depolymerization of low rank coal by extracellular fungal enzyme systems. 1. Screening for low rank-coal- depolymerizing activities Appl Microbiol Biotechnol 46 220 225 10.1007/s002530050808 1:CAS:528:DyaK28XmvFeqsbY%3D (Pubitemid 26363284)
29. M Hofrichter W Fritsche 1997 Depolymerization of low-rank coal by extracellular fungal enzyme systems. 3. In vitro depolymerization of coal humic acids by a crude preparation of manganese peroxidase from the white-rot fungus Nematoloma frowardii b19 Appl Microbiol Biotechnol 47 566 571 10.1007/s002530050974 1:CAS:528:DyaK2sXjvVOrt70%3D (Pubitemid 27272564)
30. M Hofrichter K Scheibner I Schneegass D Ziegenhagen W Fritsche 1998 Mineralization of synthetic humic substances by manganese peroxidase from the white-rot fungus Nematoloma frowardii Appl Microbiol Biotechnol 49 584 588 10.1007/s002530051217 1:CAS:528:DyaK1cXkt1Kltrc%3D (Pubitemid 28267252)
31. M Hofrichter D Ziegenhagen S Sorge R Ullrich F Bublitz W Fritsche 1999 Degradation of lignite (low-rank coal) by ligninolytic basidiomycetes and their manganese peroxidase system Appl Microbiol Biotechnol 52 78 84 10.1007/s002530051490 1:CAS:528:DyaK1MXltlKmurw%3D (Pubitemid 29364545)
32. EEJ Kaal JA Field TW Joyce 1995 Increasing ligninolytic enzyme activities in several white rot basidiomycetes by nitrogen sufficient media Bioresour Technol 53 133 139 10.1016/0960-8524(95)00066-N 1:CAS:528:DyaK2MXovFSrtbk%3D
33. Y Kabe T Osawa A Ishihara T Kabe 2005 Decolorization of coal humic acid by extracellular enzymes produced by white-rot fungi Coal Prep 25 211 220 10.1080/07349340500444463 1:CAS:528:DC%2BD28Xkslemtw%3D%3D (Pubitemid 43078565)
34. IK Kapdan F Kargi G McMullan R Marchant 2000 Effect of environmental conditions on biological decolorization of textile dyestuff by C. versicolor Enzyme Microb Technol 26 381 387 10.1016/S0141-0229(99)00168-4 1:CAS:528:DC%2BD3cXhsFGrurs%3D (Pubitemid 30122405)
35. Z Kerem KA Jensen KE Hammel 1999 Biodegradative mechanism of the brown rot basidiomycete Gloeophyllum trabeum: evidence for an extracellular hydroquinone-driven fenton reaction FEBS Lett 446 49 54 10.1016/S0014-5793(99) 00180-5 1:CAS:528:DyaK1MXht1Ogsbs%3D (Pubitemid 29127248)
36. TK Kirk MD Mozuch M Tien 1985 Free hydroxyl radical is not involved in an important reaction of lignin degradation by Phanerochaete chrysosporium Burds Biochem J 226 455 460 1:CAS:528:DyaL2MXhsVGrtbg%3D
37. A Klonowska C Gaudin M Ruzzi MC Colao T Tron 2003 Ribosomal DNA sequence analysis shows that the basidiomycete C30 belongs to the genus Trametes Res Microbiol 154 25 28 10.1016/S0923-2508(02)00005-0 1:CAS:528: DC%2BD3sXptFekuw%3D%3D (Pubitemid 36165163)
38. I Kögel-Knabner 2002 The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter Soil Biol Biochem 34 139 162 10.1016/S0038-0717(01)00158-4 (Pubitemid 34115576)
39. H Kutsuki MH Gold 1982 Generation of hydroxyl radical and its involvement in lignin degradation by Phanerochaete chrysosporium Biochem Biophys Res Commun 109 320 327 10.1016/0006-291X(82)91723-5 1:CAS:528:DyaL3sXis1an (Pubitemid 13119319)
40. 2-dependent oxidases from ligninolytic cultures of Phanerochaete chrysosporium FEBS Lett 169 247 250 10.1016/0014-5793(84)80327-0 1:CAS:528:DyaL2cXksFSmtLk%3D
41. A Leonowicz A Matuszewska J Luterek D Ziegenhagen M Wojtas-Wasilewska NS Cho M Hofrichter J Rogalski 1999 Biodegradation of lignin by white rot fungi Fungal Genet Biol 27 175 185 10.1006/fgbi.1999.1150 1:CAS:528:DyaK1MXltVahur4%3D (Pubitemid 29412839)
42. PC Leung SB Pointing 2002 Effect of different carbon and nitrogen regimes on Poly R decolorization by white-rot fungi Mycol Res 106 86 92 10.1017/S0953756201005202 1:CAS:528:DC%2BD38Xjs1ertLc%3D (Pubitemid 34186318)
43. L Levin F Forchiassin 2001 Ligninolytic enzymes of the white rot basidiomycete Trametes trogii Acta Biotechnol 21 179 186 10.1002/1521- 3846(200105)21:2<179::AID-ABIO179>3.0.CO;2-2 1:CAS:528: DC%2BD3MXktlemsL0%3D (Pubitemid 32447600)
44. L Levin F Forchiassin A Viale 2005 Ligninolytic enzyme production and dye decolorization by Trametes trogii: application of the Plackett-Burman experimental design to evaluate nutritional requirements Process Biochem 40 1381 1387 10.1016/j.procbio.2004.06.005 1:CAS:528:DC%2BD2cXhtVaktrrI (Pubitemid 39568374)
45. E Lipczynska-Kochany J Kochany 2008 Effect of humic substances on the Fenton treatment of wastewater at acidic and neutral pH Chemosphere 73 745 750 10.1016/j.chemosphere.2008.06.028 1:CAS:528:DC%2BD1cXhtFaqsbnJ
46. TK Lundell MR Mäkelä K Hildén 2010 Lignin-modifying enzymes in filamentous basidiomycetes-ecological, functional and phylogenetic review J Basic Microbiol 50 5 20 10.1002/jobm.200900338 1:CAS:528: DC%2BC3cXkt1ahu7c%3D
47. E Marco-Urrea J Radjenovic G Caminal M Petrovic T Vicent D Barcelo 2010 Oxidation of atenolol, propranolol, carbamazepine and clofibric acid by a biological Fenton-like system mediated by the white-rot fungus Trametes versicolor Water Res 44 521 532 10.1016/j.watres.2009.09.049 1:CAS:528:DC%2BC3cXhvFegs7w%3D
48. I Mielgo MT Moreira G Feijoo JM Lema 2001 A packed-bed fungal bioreactor for the continuous decolourisation of azo-dyes (Orange II) J Biotechnol 89 99 106 10.1016/S0168-1656(01)00319-4 1:CAS:528:DC%2BD3MXlslCht7Y%3D (Pubitemid 32739047)
49. MT Moreira I Mielgo G Feijoo JM Lema 2000 Evaluation of different fungal strains in the decolourisation of synthetic dyes Biotechnol Lett 22 1499 1503 10.1023/A:1005606330152 1:CAS:528:DC%2BD3cXotVWhtbY%3D
50. F Nerud P Baldrian I Eichlerova V Merhautova J Gabriel L Homolka 2004 Decolorization of dyes using white-rot fungi and radical-generating reactions Biocatal Biotransform 22 325 330 10.1080/10242420400025752 1:CAS:528: DC%2BD2MXitVCmsLo%3D (Pubitemid 40425615)
51. T Osono 2007 Ecology of ligninolytic fungi associated with leaf litter decomposition Ecol Res 22 955 974 10.1007/s11284-007-0390-z (Pubitemid 50001764)
52. JP Ralph DEA Catcheside 1998 Involvement of manganese peroxidase in the transformation of macromolecules from low-rank coal by Phanerochaete chrysosporium Appl Microbiol Biotechnol 49 778 784 10.1007/s002530051246 1:CAS:528:DyaK1cXkvVKmur4%3D (Pubitemid 28312961)
53. TM Salame O Yarden Y Hadar 2010 Pleurotus ostreatus manganese-dependent peroxidase silencing impairs decolourization of Orange II Microb Biotechnol 3 93 106 10.1111/j.1751-7915.2009.00154.x 1:CAS:528:DC%2BC3cXlslajsbo%3D
54. C Sanchez 2009 Lignocellulosic residues: biodegradation and bioconversion by fungi Biotechnol Adv 27 185 194 10.1016/j.biotechadv.2008.11.001 1:CAS:528:DC%2BD1MXntVOgug%3D%3D
55. Schnitzer M, Khan SU (1972) Humic substances in the environment. Marcel Dekker Inc, New York
56. D Singh SL Chen 2008 The white-rot fungus Phanerochaete chrysosporium: conditions for the production of lignin-degrading enzymes Appl Microbiol Biotechnol 81 399 417 10.1007/s00253-008-1706-9 1:CAS:528:DC%2BD1cXhtlyjt77I
57. 14C-labeled lignin and humic substances in forest soil by the saprobic basidiomycetes Gymnopus erythropus and Hypholoma fasciculare Soil Biol Biochem 42 1541 1548 10.1016/j.soilbio.2010.05.023
58. S Solarska T May FA Roddick AC Lawrie 2009 Isolation and screening of natural organic matter-degrading fungi Chemosphere 75 751 758 10.1016/j.chemosphere.2009.01.030 1:CAS:528:DC%2BD1MXksVChurs%3D
59. Steffen K (2003) Degradation of recalcitrant biopolymers and polycyclic aromatic hydrocarbons by litter-decomposing basidiomycetous fungi. Ph.D. thesis, University of Helsinki, Finland
60. KT Steffen A Hatakka M Hofrichter 2002 Degradation of humic acids by the litter-decomposing basidiomycete Collybia dryophila Appl Environ Microbiol 68 3442 3448 10.1128/AEM.68.7.3442-3448.2002 1:CAS:528:DC%2BD38Xlt1SntLs%3D (Pubitemid 34734043)
61. Stevenson FJ (1994) Humus chemistry. Wiley, New York
62. LL Stookey 1970 Ferrozine-a new spectrophotometric reagent for iron Anal Chem 42 779 781 10.1021/ac60289a016 1:CAS:528:DyaE3cXkt1WjtL8%3D
63. H Tanaka S Itakura A Enoki 1999 Hydroxyl radical generation by an extracellular low-molecular-weight substance and phenol oxidase activity during wood degradation by the white-rot basidiomycete Phanerochaete chrysosporium Holzforschung 53 21 28 10.1515/HF.1999.004 1:CAS:528:DyaK1MXhtFajtLg%3D
64. H Tanaka K Koike S Itakura A Enoki 2009 Degradation of wood and enzyme production by Ceriporiopsis subvermispora Enzyme Microb Technol 45 384 390 10.1016/j.enzmictec.2009.06.003 1:CAS:528:DC%2BD1MXhtFamsrnK
65. M Tekere R Zvauya JS Read 2001 Ligninolytic enzyme production in selected sub-tropical white rot fungi under different culture conditions J Basic Microbiol 41 115 129 10.1002/1521-4028(200105)41:2<115::AID-JOBM115>3.0. CO;2-S 1:CAS:528:DC%2BD3MXkvFehu7g%3D (Pubitemid 32540631)
66. M Tien TK Kirk 1983 Lignin-degrading enzyme from the hymenomycete Phanerochaete chrysosporium Burds Science 211 661 663 10.1126/science.221.4611. 661
67. M Tien TK Kirk 1988 Lignin peroxidase of Phanerochaete chrysosporium Meth Enzymol 161 238 249 10.1016/0076-6879(88)61025-1 1:CAS:528:DyaL1MXhs1yqtbo%3D
68. S Trupkin L Levin F Forchiassin A Viale 2003 Optimization of a culture medium for ligninolytic enzyme production and synthetic dye decolorization using response surface methodology J Ind Microbiol Biotech 30 682 690 10.1007/s10295-003-0099-0 1:CAS:528:DC%2BD2cXnsFGltA%3D%3D (Pubitemid 38230501)
69. A Vanden Wymelenberg J Gaskell M Mozuch G Sabat J Ralph O Skyba SD Mansfield RA Blanchette D Martinez I Grigoriev PJ Kersten D Cullen 2010 Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium Appl Environ Microbiol 76 3599 3610 10.1128/AEM.00058-10 1:CAS:528:DC%2BC3cXot1Cgu7w%3D
70. L Wang WC Yan JC Chen H Feng PJ Gao 2008 Function of the iron-binding chelator produced by Coriolus versicolor in lignin biodegradation Sci China C Life Sci 51 214 221 10.1007/s11427-008-0033-9 1:CAS:528:DC%2BD1cXntVSqtLc%3D (Pubitemid 351208381)
71. G Xu B Goodell 2001 Mechanisms of wood degradation by brown-rot fungi: chelator-mediated cellulose degradation and binding of iron by cellulose J Biotechnol 87 43 57 10.1016/S0168-1656(00)00430-2 1:CAS:528:DC%2BD3MXitVOhtrY%3D (Pubitemid 32232224)
72. 2-producing enzymes in selected white rot fungi FEMS Microbiol Lett 139 215 221 10.1111/j.1574-6968.1996.tb08205.x 1:CAS:528:DyaK28XjsVOrsrY%3D (Pubitemid 26200791)