Mechanisms of humic acids degradation by white rot fungi explored using 1H NMR spectroscopy and FTICR mass spectrometry

Environmental Science and Technology

Volumn 45, Issue 7, 2011, Pages 2748-2754

  Grinhut, Tzafrir ^a   Hertkorn, Norbert ^b   Schmitt Kopplin, Philippe ^b   Hadar, Yitzhak ^a   Chen, Yona ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^b INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC CONTENTS; BIOCHEMICAL DEGRADATION; DECAY PROCESS; DEGRADATION PRODUCTS; DEMETHYLATION; ENZYMATIC ACTIVITIES; FT-ICR MASS SPECTROMETRY; FT-ICR MS; H NMR SPECTROSCOPY; HUMIC ACID; NMR ANALYSIS; SOFTWARE PROGRAM; WHITE ROT FUNGI;

AROMATIC COMPOUNDS; AROMATIZATION; BIODEGRADATION; BIOLOGICAL MATERIALS; CHEMICAL ANALYSIS; DEGRADATION; FOURIER TRANSFORMS; FUNGI; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; ORGANIC ACIDS; OXIDATION;

SIZE EXCLUSION CHROMATOGRAPHY;

HUMIC ACID;

BIODEGRADATION; CHROMATOGRAPHY; ENZYME ACTIVITY; FTIR SPECTROSCOPY; FUNGUS; HUMIC ACID; LIGNIN; METHYLATION; NUCLEAR MAGNETIC RESONANCE; OXIDATION; SOFTWARE;

ARTICLE; BIODEGRADATION; DEGRADATION; DEMETHYLATION; ENZYME ACTIVITY; FOURIER TRANSFORM CYCLOTRON RESONANCE MASS SPECTROMETRY; FOURIER TRANSFORM MASS SPECTROMETRY; GEL PERMEATION CHROMATOGRAPHY; NONHUMAN; OXIDATION; PHANEROCHAETE; PHYSICAL CHEMISTRY; PROTON NUCLEAR MAGNETIC RESONANCE; TRAMETES; WHITE ROT FUNGUS;

BIODEGRADATION, ENVIRONMENTAL; FOURIER ANALYSIS; HUMIC SUBSTANCES; MAGNETIC RESONANCE SPECTROSCOPY; MASS SPECTROMETRY; PHANEROCHAETE; SOIL MICROBIOLOGY; TRAMETES;

FUNGI; PHANEROCHAETE; TRAMETES;

EID: 79953253563     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es1036139     Document Type: Article

References (30)

1. Schnitzer, M.; Khan, S. U. Humic Substances in the Environment; Marcel Dekker Inc: New York, 1972.
2. Kastner, M.; Hofrichter, M. Biodegradation of humic substances. In Biopolymers. Lignin, Humic Substances and Coal; Hofrichter, M., Steinbuchel, A.; Wiley-VCH: Weinheim: Germany, 2001; Vol. 1, pp 349 - 378.
3. Stevenson, F. J. Humus Chemistry; 2 nd ed.; John Wiley: New York, 1994.
4. Simpson, M. J.; Chefetz, B.; Hatcher, P. G. Phenanthrene sorption to structurally modified humic acids J. Environ. Qual. 2003, 32 (5) 1750-1758 (Pubitemid 37174227)
5. Chen, Y.; Katan, J.; Gamliel, A.; Aviad, T.; Schnitzer, M. Involvement of soluble organic matter in increased plant growth in solarized soils Biol. Fertil. Soils 2000, 32 (1) 28-34 (Pubitemid 32139501)
6. Kaschl, A.; Romheld, V.; Chen, Y. Cadmium binding by fractions of dissolved organic matter and humic substances from municipal solid waste compost J. Environ. Qual. 2002, 31 (6) 1885-1892 (Pubitemid 35403614)
7. Bradley, P. M.; Chapelle, F. H.; Lovley, D. R. Humic acids as electron acceptors for anaerobic microbial oxidation of vinyl chloride and dichloroethene Appl. Environ. Microbiol. 1998, 64 (8) 3102-3105 (Pubitemid 28363195)
8. Coates, J. D.; Ellis, D. J.; Blunt-Harris, E. L.; Gaw, C. V.; Roden, E. E.; Lovley, D. R. Recovery of humic-reducing bacteria from a diversity of environments Appl. Environ. Microbiol. 1998, 64 (4) 1504-1509 (Pubitemid 28188419)
9. MacCarthy, P. The principles of humic substances Soil Sci. 2001, 166 (11) 738-751 (Pubitemid 33146191)
10. Grinhut, T.; Hadar, Y.; Chen, Y. Degradation and transformation of humic substances by saprotrophic fungi: Processes and mechanisms Fungal Biol. Rev. 2007, 21 (4) 179-189 (Pubitemid 350181830)
11. Esham, E. C.; Ye, W. Y.; Moran, M. A. Identification and characterization of humic substances-degrading bacterial isolates from an estuarine environment FEMS Microbiol. Ecol. 2000, 34 (2) 103-111
12. Blondeau, R. Biodegradation of natural and synthetic humic acids by the white rot fungus Phanerochaete-Chrysosporium Appl. Environ. Microbiol. 1989, 55 (5) 1282-1285
13. Fakoussa, R. M.; Frost, P. J. In vivo-decolorization of coal-derived humic acids by laccase-excreting fungus Trametes versicolor Appl. Microbiol. Biotechnol. 1999, 52 (1) 60-65 (Pubitemid 29364542)
14. Haider, K. M.; Martin, J. P. Mineralization of C-14-labeled humic acids and of humic-acid bound C-14 xenobiotics by Phanerochaete-Chrysosporium Soil Biol. Biochem. 1988, 20 (4) 425-429
15. Steffen, K. T.; Hatakka, A.; Hofrichter, M. Degradation of humic acids by the litter-decomposing basidiomycete Collybia dryophila Appl. Environ. Microbiol. 2002, 68 (7) 3442-3448 (Pubitemid 34734043)
16. Yanagi, Y.; Tamaki, H.; Otsuka, H.; Fujitake, N. Comparison of decolorization by microorganisms of humic acids with different C-13 NMR properties Soil Biol. Biochem. 2002, 34 (5) 729-731 (Pubitemid 34463502)
17. Granit, T.; Chen, Y. N.; Hadar, Y. Humic acid bleaching by white-rot fungi isolated from biosolids compost Soil Biol. Biochem. 2007, 39 (5) 1040-1046 (Pubitemid 46349196)
18. Fakoussa, R. M.; Hofrichter, M. Biotechnology and microbiology of coal degradation Appl. Microbiol. Biotechnol. 1999, 52 (1) 25-40 (Pubitemid 29364538)
19. Dehorter, B.; Kontchou, C. Y.; Blondeau, R. C-13 NMR spectroscopic analysis of soil humic acids recovered after incubation with some white rot fungi and Actinomycetes Soil Biol. Biochem. 1992, 24 (7) 667-673
20. Willmann, G.; Fakoussa, R. M. Biological bleaching of water-soluble coal macromolecules by a basidiomycete strain Appl. Microbiol. Biotechnol. 1997, 47 (2) 95-101 (Pubitemid 27096744)
21. Hertkorn, N.; Ruecker, C.; Meringer, M.; Gugisch, R.; Frommberger, M.; Perdue, E. M.; Witt, M.; Schmitt-Kopplin, P. High-precision frequency measurements: indispensable tools at the core of the molecular-level analysis of complex systems Anal. Bioanal. Chem. 2007, 389 (5) 1311-1327 (Pubitemid 350023659)
22. Schmitt-Kopplin, P.; Hertkorn, N. Ultrahigh resolution mass spectrometry Anal. Bioanal. Chem. 2007, 389, 1309-1310
23. Stenson, A. C.; Marshall, A. G.; Cooper, W. T. Exact masses and chemical formulas of individual Suwannee River fulvic acids from ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectra Anal. Chem. 2003, 75 (6) 1275-1284 (Pubitemid 36397158)
24. Grinhut, T.; Lansky, D.; Gaspar, A.; Hertkorn, N.; Schmitt-Kopplin, P.; Hadar, Y.; Chen, Y. Novel software for data analysis of Fourier transform ion cyclotron resonance mass spectra applied to natural organic matter Rapid Commun. Mass Spectrom. 2010, 24 (19) 2831-2837
25. Kabe, Y.; Osawa, T.; Ishihara, A.; Kabe, T. Decolorization of coal humic acid by extracellular enzymes produced by white-rot fungi Coal Prep. 2005, 25 (4) 211-220 (Pubitemid 43078565)
26. Gramss, G.; Ziegenhagen, D.; Sorge, S. Degradation of soil humic extract by wood- and soil-associated fungi, bacteria, and commercial enzymes Microb. Ecol. 1999, 37 (2) 140-151 (Pubitemid 29170576)
27. Zavgorodnyaya, Y. A.; Demin, V. V.; Kurakov, A. V. Biochemical degradation of soil humic acids and fungal melanins Org. Geochem. 2002, 33 (3) 347-355 (Pubitemid 34623312)
28. Sleighter, R. L.; Hatcher, P. G. The application of electrospray ionization coupled to ultrahigh resolution mass spectrometry for the molecular characterization of natural organic matter J. Mass Spectrom. 2007, 42 (5) 559-574 (Pubitemid 46808479)
29. Koch, B. P.; Dittmar, T. From mass to structure: an aromaticity index for high-resolution mass data of natural organic matter Rapid Commun. Mass Spectrom. 2006, 20 (5) 926-932 (Pubitemid 43326704)
30. Hockaday, W. C.; Grannas, A. M.; Kim, S.; Hatcher, P. G. Direct molecular evidence for the degradation and mobility of black carbon in soils from ultrahigh-resolution mass spectral analysis of dissolved organic matter from a fire-impacted forest soil Org. Geochem. 2006, 37 (4) 501-510 (Pubitemid 43374601)