-
1
-
-
0037174671
-
Transcription regulatory neworks in Saccharomyces cerivisiae
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Jospeh Z, et al. (2002) Transcription regulatory neworks in Saccharomyces cerivisiae. Science pp. 799-804.
-
(2002)
Science
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Jospeh, Z.5
-
2
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
-
3
-
-
63849315606
-
High-resolution DNa-binding specificity analysis of yeast transcription factors
-
Zhu C, Byers K, McCord R, Shi Z, Berger M, et al. (2009) High-resolution DNa-binding specificity analysis of yeast transcription factors. Genome Res 19: 556-566.
-
(2009)
Genome Res
, vol.19
, pp. 556-566
-
-
Zhu, C.1
Byers, K.2
McCord, R.3
Shi, Z.4
Berger, M.5
-
4
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
Macisaac KD, Wang T, Gordon BD, Gifford DK, Stormo GD, et al. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
Macisaac, K.D.1
Wang, T.2
Gordon, B.D.3
Gifford, D.K.4
Stormo, G.D.5
-
5
-
-
33846067980
-
SwissRegulon: a database of genome-wide annotations of regulatory sites
-
Pachkov M, Erb I, Molina N, van Nimwegen E, (2007) SwissRegulon: a database of genome-wide annotations of regulatory sites. Nucl Acids Res 35: D127-131.
-
(2007)
Nucl Acids Res
, vol.35
, pp. 127-131
-
-
Pachkov, M.1
Erb, I.2
Molina, N.3
van Nimwegen, E.4
-
6
-
-
0036578654
-
Topological and causal structure of the yeast transcriptional regulatory network
-
Guelzim N, Bottani S, Bourgine P, Kepes F, (2002) Topological and causal structure of the yeast transcriptional regulatory network. Nat Genet 31: 60-63.
-
(2002)
Nat Genet
, vol.31
, pp. 60-63
-
-
Guelzim, N.1
Bottani, S.2
Bourgine, P.3
Kepes, F.4
-
7
-
-
27744547023
-
Computational architecture of the yeast regulatory network
-
Maslov S, Sneppen K, (2005) Computational architecture of the yeast regulatory network. Phys Biol 2: S94-100.
-
(2005)
Phys Biol
, vol.2
, pp. 94-100
-
-
Maslov, S.1
Sneppen, K.2
-
9
-
-
33745449162
-
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast
-
Balaji S, Baby M, Iyer L, Luscombe N, Aravind L, (2006) Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast. J Mol Biol 360: 213-27.
-
(2006)
J Mol Biol
, vol.360
, pp. 213-227
-
-
Balaji, S.1
Baby, M.2
Iyer, L.3
Luscombe, N.4
Aravind, L.5
-
10
-
-
20144384163
-
Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE
-
Zhang Z, Dietrich FS, (2005) Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE. Nucl Acids Res 33: 2838-2851.
-
(2005)
Nucl Acids Res
, vol.33
, pp. 2838-2851
-
-
Zhang, Z.1
Dietrich, F.S.2
-
11
-
-
33845223334
-
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
-
Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, et al. (2006) A large-scale full-length cDNA analysis to explore the budding yeast transcriptome. Proc Natl Acad Sci USA 103: 17846-17851.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17846-17851
-
-
Miura, F.1
Kawaguchi, N.2
Sese, J.3
Toyoda, A.4
Hattori, M.5
-
12
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
David L, Huber W, Granovskaia M, Toedlinger J, Palm CJ, et al. (2006) A high-resolution map of transcription in the yeast genome. PNAS 103: 5320-5325.
-
(2006)
PNAS
, vol.103
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedlinger, J.4
Palm, C.J.5
-
13
-
-
45549088326
-
The transcriptional landscape of the yeast genome de_ned by rna sequencing
-
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, et al. (2008) The transcriptional landscape of the yeast genome de_ned by rna sequencing. Science 320: 1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
-
14
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, et al. (2006) Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 38: 626-635.
-
(2006)
Nat Genet
, vol.38
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
Katayama, S.4
Shimokawa, K.5
-
15
-
-
1542328960
-
Identification and distinct regulation of yeast tata box-containing genes
-
Basehoar A, Pugh B, (2004) Identification and distinct regulation of yeast tata box-containing genes. Cell 116: 699-709.
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.1
Pugh, B.2
-
16
-
-
33744913056
-
Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model
-
Kuehner J, Brow D, (2006) Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model. J Biol Chem 281: 14119-14128.
-
(2006)
J Biol Chem
, vol.281
, pp. 14119-14128
-
-
Kuehner, J.1
Brow, D.2
-
17
-
-
78651343432
-
Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae
-
Sugihara F, Kasahara K, Kokubo T, (2011) Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae. Nucleic Acids Res 39: 59-75.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 59-75
-
-
Sugihara, F.1
Kasahara, K.2
Kokubo, T.3
-
19
-
-
38449096936
-
Finding regulatory elements and regulatory motifs: a general probabilistic framework
-
van Nimwegen E, (2007) Finding regulatory elements and regulatory motifs: a general probabilistic framework. BMC Bioinformatics 8: S4.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
van Nimwegen, E.1
-
20
-
-
0036851309
-
Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae
-
Sudarsanam P, Pilpel Y, Church G, (2002) Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae. Genome Res 12: 1723-31.
-
(2002)
Genome Res
, vol.12
, pp. 1723-1731
-
-
Sudarsanam, P.1
Pilpel, Y.2
Church, G.3
-
21
-
-
34250785284
-
Genetic properties inuencing the evolvability of gene expression
-
Landry C, Lemos B, Rifkin S, Dickinson W, Hartl D, (2007) Genetic properties inuencing the evolvability of gene expression. Science 317: 118-21.
-
(2007)
Science
, vol.317
, pp. 118-121
-
-
Landry, C.1
Lemos, B.2
Rifkin, S.3
Dickinson, W.4
Hartl, D.5
-
22
-
-
33749153628
-
Nucleosome positions predicted through comparative genomics
-
Ioshikhes I, Albert I, Zanton S, Pugh B, (2006) Nucleosome positions predicted through comparative genomics. Nat Genet 38: 1210-5.
-
(2006)
Nat Genet
, vol.38
, pp. 1210-1215
-
-
Ioshikhes, I.1
Albert, I.2
Zanton, S.3
Pugh, B.4
-
23
-
-
43749088127
-
Two strategies for gene regulation by promoter nucleosomes
-
Tirosh I, Barkai N, (2008) Two strategies for gene regulation by promoter nucleosomes. Genome Res 18: 1084-1091.
-
(2008)
Genome Res
, vol.18
, pp. 1084-1091
-
-
Tirosh, I.1
Barkai, N.2
-
24
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
Lee W, Nislow C, (2007) A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet 39: 1235-1244.
-
(2007)
Nat Genet
, vol.39
, pp. 1235-1244
-
-
Lee, W.1
Nislow, C.2
-
25
-
-
0030473801
-
3′-end-forming signals of yeast mRNA
-
Guo Z, Sherman F, (1996) 3′-end-forming signals of yeast mRNA. Trends Biochem Sci 21: 477-81.
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 477-481
-
-
Guo, Z.1
Sherman, F.2
-
26
-
-
0034651804
-
Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals
-
van Helden J, del Olmo M, Perez-Ortin J, (2000) Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals. Nucleic Acids Res 28: 1000-1010.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1000-1010
-
-
van Helden, J.1
del Olmo, M.2
Perez-Ortin, J.3
-
27
-
-
0037089139
-
Probabilistic prediction of saccharomyces cerevisiae mRNA 3′-processing sites
-
Graber J, McAllister G, Smith T, (2002) Probabilistic prediction of saccharomyces cerevisiae mRNA 3′-processing sites. Nucleic Acids Res 30: 1851-1858.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1851-1858
-
-
Graber, J.1
McAllister, G.2
Smith, T.3
-
28
-
-
60349122111
-
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
-
Venters B, Pugh B, (2009) A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res 19: 360-371.
-
(2009)
Genome Res
, vol.19
, pp. 360-371
-
-
Venters, B.1
Pugh, B.2
-
29
-
-
4444262632
-
Gene loops juxtapose promoters and terminators in yeast
-
O'Sullivan J, Tan-Wong S, Morillon A, Lee B, Mellor JCJ, et al. (2004) Gene loops juxtapose promoters and terminators in yeast. Nat Genet 36: 1014-1018.
-
(2004)
Nat Genet
, vol.36
, pp. 1014-1018
-
-
O'Sullivan, J.1
Tan-Wong, S.2
Morillon, A.3
Lee, B.4
Mellor, J.C.J.5
-
30
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
-
Mavrich T, Ioshikhes I, Venters B, Jiang C, Tomsho L, et al. (2008) A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res 18: 1073-1083.
-
(2008)
Genome Res
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.1
Ioshikhes, I.2
Venters, B.3
Jiang, C.4
Tomsho, L.5
-
31
-
-
33745841579
-
The pol II initiation complex: Finding a place to start
-
Hampsey M, (2006) The pol II initiation complex: Finding a place to start. Nature Struc Mol Biol 13: 564-566.
-
(2006)
Nature Struc Mol Biol
, vol.13
, pp. 564-566
-
-
Hampsey, M.1
-
32
-
-
38049020974
-
A code for transcription initiation in mammalian genomes
-
Frith M, Valen E, Krogh A, Hayashizaki Y, Carninci P, et al. (2008) A code for transcription initiation in mammalian genomes. Genome Res 18: 1-12.
-
(2008)
Genome Res
, vol.18
, pp. 1-12
-
-
Frith, M.1
Valen, E.2
Krogh, A.3
Hayashizaki, Y.4
Carninci, P.5
-
33
-
-
33846214719
-
Prevalence of the initiator over the TATA box in human and yeast genes and identi_cation of DNA motifs enriched in human TATA-less core promoters
-
Yang C, Bolotin E, Jiang T, Sladek FM, Martinez E, (2007) Prevalence of the initiator over the TATA box in human and yeast genes and identi_cation of DNA motifs enriched in human TATA-less core promoters. Gene 389: 52-65.
-
(2007)
Gene
, vol.389
, pp. 52-65
-
-
Yang, C.1
Bolotin, E.2
Jiang, T.3
Sladek, F.M.4
Martinez, E.5
-
34
-
-
68249142923
-
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
-
Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, et al. (2009) Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol 16: 847-852.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 847-852
-
-
Zhang, Y.1
Moqtaderi, Z.2
Rattner, B.P.3
Euskirchen, G.4
Snyder, M.5
-
35
-
-
68349125112
-
What controls nucleosome positions?
-
Segal E, Widom J, (2009) What controls nucleosome positions? Trends Genet 25: 335-343.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
36
-
-
77950361329
-
Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?
-
Stein A, Takasuka TE, Collings CK, (2010) Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences? Nucleic Acids Res 38: 709-719.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 709-719
-
-
Stein, A.1
Takasuka, T.E.2
Collings, C.K.3
-
37
-
-
78650576256
-
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology
-
Kaplan N, Hughes TR, Lieb JD, Widom J, Segal E, (2010) Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology. Genome Biol 11: 140.
-
(2010)
Genome Biol
, vol.11
, pp. 140
-
-
Kaplan, N.1
Hughes, T.R.2
Lieb, J.D.3
Widom, J.4
Segal, E.5
-
38
-
-
78650445679
-
High-throughput sequencing reveals a simple model of nucleosome energetics
-
Locke G, Tolkunov D, Moqtaderi Z, Struhl K, Morozov AV, (2010) High-throughput sequencing reveals a simple model of nucleosome energetics. Proc Natl Acad Sci USA 107: 20998-21003.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 20998-21003
-
-
Locke, G.1
Tolkunov, D.2
Moqtaderi, Z.3
Struhl, K.4
Morozov, A.V.5
-
39
-
-
0029844678
-
Involvement of the sensor kinase envz in the in vivo activation of the response-regulator phob by acetyl phosphate
-
Kim S, Wilmes-Riesenberg M, Wanner B, (1996) Involvement of the sensor kinase envz in the in vivo activation of the response-regulator phob by acetyl phosphate. Mol Microbiol 22: 135-137.
-
(1996)
Mol Microbiol
, vol.22
, pp. 135-137
-
-
Kim, S.1
Wilmes-Riesenberg, M.2
Wanner, B.3
-
40
-
-
0043269205
-
The RNA polymerase II core promoter
-
Smale S, Kadonaga JT, (2003) The RNA polymerase II core promoter. Annu Rev Biochem 72: 449-479.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 449-479
-
-
Smale, S.1
Kadonaga, J.T.2
-
41
-
-
0037094434
-
Nitrogen regulation in Saccharomyces cerevisiae
-
Magasanik B, Kaiser CA, (2002) Nitrogen regulation in Saccharomyces cerevisiae. Gene 290: 1-18.
-
(2002)
Gene
, vol.290
, pp. 1-18
-
-
Magasanik, B.1
Kaiser, C.A.2
-
42
-
-
0033540030
-
The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors
-
Beck T, Hall MN, (1999) The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature 402: 689-692.
-
(1999)
Nature
, vol.402
, pp. 689-692
-
-
Beck, T.1
Hall, M.N.2
-
43
-
-
0034680772
-
Tripartite regulation of Gln3p by TOR, Ure2p, and phosphatases
-
Bertram PG, Choi JH, Carvalho J, Ai W, Zeng C, et al. (2000) Tripartite regulation of Gln3p by TOR, Ure2p, and phosphatases. J Biol Chem 275: 35727-35733.
-
(2000)
J Biol Chem
, vol.275
, pp. 35727-35733
-
-
Bertram, P.G.1
Choi, J.H.2
Carvalho, J.3
Ai, W.4
Zeng, C.5
-
44
-
-
0030944694
-
Cross regulation of four GATA factors that control nitrogen catabolic gene expression in Saccharomyces cerevisiae
-
Coffman JA, Rai R, Loprete DM, Cunningham T, Svetlov V, et al. (1997) Cross regulation of four GATA factors that control nitrogen catabolic gene expression in Saccharomyces cerevisiae. J Bacteriol 179: 3416-3429.
-
(1997)
J Bacteriol
, vol.179
, pp. 3416-3429
-
-
Coffman, J.A.1
Rai, R.2
Loprete, D.M.3
Cunningham, T.4
Svetlov, V.5
-
45
-
-
0034625341
-
Saccharomyces cerevisiae GATA sequences function as TATA elements during nitrogen catabolite repression and when Gln3p is excluded from the nucleus by overproduction of Ure2p
-
Cox KH, Rai R, Distler M, Daugherty JR, Coffman JA, et al. (2000) Saccharomyces cerevisiae GATA sequences function as TATA elements during nitrogen catabolite repression and when Gln3p is excluded from the nucleus by overproduction of Ure2p. J Biol Chem 275: 17611-17618.
-
(2000)
J Biol Chem
, vol.275
, pp. 17611-17618
-
-
Cox, K.H.1
Rai, R.2
Distler, M.3
Daugherty, J.R.4
Coffman, J.A.5
-
46
-
-
0037774598
-
Sum1 and Ndt80 proteins compete for binding to middle sporulation element sequences that control meiotic gene expression
-
Pierce M, Benjamin KR, Montano SP, Georgiadis MM, Winter E, et al. (2003) Sum1 and Ndt80 proteins compete for binding to middle sporulation element sequences that control meiotic gene expression. Mol Cell Biol 23: 4814-4825.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 4814-4825
-
-
Pierce, M.1
Benjamin, K.R.2
Montano, S.P.3
Georgiadis, M.M.4
Winter, E.5
-
47
-
-
77953448725
-
The Cdk1 and Ime2 protein kinases trigger exit from meiotic prophase in Saccharomyces cerevisiae by inhibiting the Sum1 transcriptional repressor
-
Shin ME, Skokotas A, Winter E, (2010) The Cdk1 and Ime2 protein kinases trigger exit from meiotic prophase in Saccharomyces cerevisiae by inhibiting the Sum1 transcriptional repressor. Mol Cell Biol 30: 2996-3003.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 2996-3003
-
-
Shin, M.E.1
Skokotas, A.2
Winter, E.3
-
48
-
-
0034463392
-
Rox1 mediated repression. Oxygen dependent repression in yeast
-
Kastaniotis AJ, Zitomer RS, (2000) Rox1 mediated repression. Oxygen dependent repression in yeast. Adv Exp Med Biol 475: 185-195.
-
(2000)
Adv Exp Med Biol
, vol.475
, pp. 185-195
-
-
Kastaniotis, A.J.1
Zitomer, R.S.2
-
49
-
-
0342868306
-
Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth
-
Zhu G, Spellman PT, Volpe T, Brown PO, Botstein D, et al. (2000) Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. Nature 406: 90-94.
-
(2000)
Nature
, vol.406
, pp. 90-94
-
-
Zhu, G.1
Spellman, P.T.2
Volpe, T.3
Brown, P.O.4
Botstein, D.5
-
50
-
-
0035883741
-
Mechanisms controlling differential promoter-occupancy by the yeast forkhead proteins Fkh1p and Fkh2p: implications for regulating the cell cycle and differentiation
-
Hollenhorst PC, Pietz G, Fox CA, (2001) Mechanisms controlling differential promoter-occupancy by the yeast forkhead proteins Fkh1p and Fkh2p: implications for regulating the cell cycle and differentiation. Genes Dev 15: 2445-2456.
-
(2001)
Genes Dev
, vol.15
, pp. 2445-2456
-
-
Hollenhorst, P.C.1
Pietz, G.2
Fox, C.A.3
-
51
-
-
34147194965
-
The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor to repress transcription of the B-type cyclin gene CLB2
-
Sherriff JA, Kent NA, Mellor J, (2007) The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor to repress transcription of the B-type cyclin gene CLB2. Mol Cell Biol 27: 2848-2860.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 2848-2860
-
-
Sherriff, J.A.1
Kent, N.A.2
Mellor, J.3
-
52
-
-
73949150346
-
Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6
-
Lippman SI, Broach JR, (2009) Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6. Proc Natl Acad Sci USA 106: 19928-19933.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19928-19933
-
-
Lippman, S.I.1
Broach, J.R.2
-
53
-
-
0035853037
-
RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: a negative feedback circuit
-
Xie Y, Varshavsky A, (2001) RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: a negative feedback circuit. Proc Natl Acad Sci USA 98: 3056-3061.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 3056-3061
-
-
Xie, Y.1
Varshavsky, A.2
-
54
-
-
61849183551
-
Disruption of Rpn4-induced proteasome expression in Saccha-romyces cerevisiae reduces cell viability under stressed conditions
-
Wang X, Xu H, Ju D, Xie Y, (2008) Disruption of Rpn4-induced proteasome expression in Saccha-romyces cerevisiae reduces cell viability under stressed conditions. Genetics 180: 1945-1953.
-
(2008)
Genetics
, vol.180
, pp. 1945-1953
-
-
Wang, X.1
Xu, H.2
Ju, D.3
Xie, Y.4
-
55
-
-
0038724989
-
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
-
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, et al. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301: 71-76.
-
(2003)
Science
, vol.301
, pp. 71-76
-
-
Cliften, P.1
Sudarsanam, P.2
Desikan, A.3
Fulton, L.4
Fulton, B.5
-
56
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES, (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
57
-
-
0034623005
-
T-Coffee: A novel method for multiple sequence alignments
-
Notredame C, Higgins D, Heringa J, (2000) T-Coffee: A novel method for multiple sequence alignments. J Mol Biol 302: 205-217.
-
(2000)
J Mol Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
58
-
-
0035197028
-
EBP2 is a member of the yeast RRB regulon, a transcriptionally coregulated set of genes that are required for ribosome and rRNA biosynthesis
-
Wade C, Shea KA, Jensen RV, McAlear MA, (2001) EBP2 is a member of the yeast RRB regulon, a transcriptionally coregulated set of genes that are required for ribosome and rRNA biosynthesis. Mol Cell Biol 21: 8638-8650.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 8638-8650
-
-
Wade, C.1
Shea, K.A.2
Jensen, R.V.3
McAlear, M.A.4
-
59
-
-
0032861774
-
SCPD: a promoter database of the yeast Saccharomyces cerevisiae
-
Zhu J, Zhang MQ, (1999) SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics 15: 607-611.
-
(1999)
Bioinformatics
, vol.15
, pp. 607-611
-
-
Zhu, J.1
Zhang, M.Q.2
-
60
-
-
0037188521
-
Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics
-
van Nimwegen E, Zavolan M, Rajewsky N, Siggia ED, (2002) Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics. Proc Natl Acad Sci USA 99: 7323-7328.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7323-7328
-
-
van Nimwegen, E.1
Zavolan, M.2
Rajewsky, N.3
Siggia, E.D.4
|