-
1
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution Nature 389, 251-260 (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
2
-
-
0025837183
-
The nucleosomal core histone octamer at 3.1 A resolution: A tripartite protein assembly and a left-handed superhelix
-
Arents, G., Burlingame, R. W., Wang, B. C., Love, W. E., and Moudrianakis, E. N. (1991) The nucleosomal core histone octamer at 3.1 Å resolution: a tripartite protein assembly and a left-handed superhelix Proc. Natl. Acad. Sci. U. S. A. 88, 10148-10152 (Pubitemid 21915792)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.22
, pp. 10148-10152
-
-
Arents, G.1
Burlingame, R.W.2
Wang, B.I.-C.3
Love, W.E.4
Moudrianakis, E.N.5
-
3
-
-
0028867087
-
The histone fold: A ubiquitous architectural motif utilized in DNA compaction and protein dimerization
-
Arents, G. and Moudrianakis, E. N. (1995) The histone fold: a ubiquitous architectural motif utilized in DNA compaction and protein dimerization Proc. Natl. Acad. Sci. U. S. A. 92, 11170-11174
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 11170-11174
-
-
Arents, G.1
Moudrianakis, E.N.2
-
4
-
-
0034610814
-
The language of covalent histone modifications
-
DOI 10.1038/47412
-
Strahl, B. D. and Allis, C. D. (2000) The language of covalent histone modifications Nature 403, 41-45 (Pubitemid 30038513)
-
(2000)
Nature
, vol.403
, Issue.6765
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
5
-
-
0035839136
-
Translating the histone code
-
DOI 10.1126/science.1063127
-
Jenuwein, T. and Allis, C. D. (2001) Translating the histone code Science 293, 1074-1080 (Pubitemid 32758077)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
6
-
-
33749657892
-
PTMs on H3 Variants before Chromatin Assembly Potentiate Their Final Epigenetic State
-
DOI 10.1016/j.molcel.2006.08.019, PII S1097276506006009
-
Loyola, A., Bonaldi, T., Roche, D., Imhof, A., and Almouzni, G. (2006) PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state Mol. Cell 24, 309-316 (Pubitemid 44557123)
-
(2006)
Molecular Cell
, vol.24
, Issue.2
, pp. 309-316
-
-
Loyola, A.1
Bonaldi, T.2
Roche, D.3
Imhof, A.4
Almouzni, G.5
-
7
-
-
34548433964
-
Marking histone H3 variants: How, when and why?
-
DOI 10.1016/j.tibs.2007.08.004, PII S0968000407001922
-
Loyola, A. and Almouzni, G. (2007) Marking histone H3 variants: How, when and why? Trends Biochem. Sci. 32, 425-433 (Pubitemid 47369165)
-
(2007)
Trends in Biochemical Sciences
, vol.32
, Issue.9
, pp. 425-433
-
-
Loyola, A.1
Almouzni, G.2
-
8
-
-
0037099664
-
Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization- postsource decay, and nanoelectrospray ionization tandem mass spectrometry
-
DOI 10.1006/abio.2002.5719
-
Zhang, K., Tang, H., Huang, L., Blankenship, J. W., Jones, P. R., Xiang, F., Yau, P. M., and Burlingame, A. L. (2002) Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry Anal. Biochem. 306, 259-269 (Pubitemid 34791495)
-
(2002)
Analytical Biochemistry
, vol.306
, Issue.2
, pp. 259-269
-
-
Zhang, K.1
Tang, H.2
Huang, L.3
Blankenship, J.W.4
Jones, P.R.5
Xiang, F.6
Yau, P.M.7
Burlingame, A.L.8
-
9
-
-
0041382914
-
Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry
-
DOI 10.1023/A:1025334006014
-
Cocklin, R. R. and Wang, M. (2003) Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry J. Protein Chem. 22, 327-334 (Pubitemid 37087793)
-
(2003)
Journal of Protein Chemistry
, vol.22
, Issue.4
, pp. 327-334
-
-
Cocklin, R.R.1
Wang, M.2
-
10
-
-
0141483484
-
Identification of novel histone post-translational modifications by peptide mass fingerprinting
-
DOI 10.1007/s00412-003-0244-6
-
Zhang, L., Eugeni, E. E., Parthun, M. R., and Freitas, M. A. (2003) Identification of novel histone post-translational modifications by peptide mass fingerprinting Chromosoma 112, 77-86 (Pubitemid 37150565)
-
(2003)
Chromosoma
, vol.112
, Issue.2
, pp. 77-86
-
-
Zhang, L.1
Eugeni, E.E.2
Parthun, M.R.3
Freitas, M.A.4
-
11
-
-
7544229161
-
Application of mass spectrometry to the identification and quantification of histone post-translational modifications
-
DOI 10.1002/jcb.20106
-
Freitas, M. A., Sklenar, A. R., and Parthun, M. R. (2004) Application of mass spectrometry to the identification and quantification of histone post-translational modifications J. Cell. Biochem. 92, 691-700 (Pubitemid 44264260)
-
(2004)
Journal of Cellular Biochemistry
, vol.92
, Issue.4
, pp. 691-700
-
-
Freitas, M.A.1
Sklenar, A.R.2
Parthun, M.R.3
-
12
-
-
7544241632
-
Regulated nucleosome mobility and the histone code
-
DOI 10.1038/nsmb851
-
Cosgrove, M. S., Boeke, J. D., and Wolberger, C. (2004) Regulated nucleosome mobility and the histone code Nat. Struct. Mol. Biol. 11, 1037-1043 (Pubitemid 39453330)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.11
, pp. 1037-1043
-
-
Cosgrove, M.S.1
Boeke, J.D.2
Wolberger, C.3
-
13
-
-
33646900510
-
The tale beyond the tail: Histone core domain modifications and the regulation of chromatin structure
-
DOI 10.1093/nar/gkl338
-
Mersfelder, E. L. and Parthun, M. R. (2006) The tale beyond the tail: histone core domain modifications and the regulation of chromatin structure Nucleic Acids Res. 34, 2653-2662 (Pubitemid 43985628)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.9
, pp. 2653-2662
-
-
Mersfelder, E.L.1
Parthun, M.R.2
-
14
-
-
40949099577
-
ε-acetyllysine in recombinant proteins
-
DOI 10.1038/nchembio.73, PII NCHEMBIO73
-
Neumann, H., Peak-Chew, S. Y., and Chin, J. W. (2008) Genetically encoding N(epsilon)-acetyllysine in recombinant proteins Nat. Chem. Biol. 4, 232-234 (Pubitemid 351414829)
-
(2008)
Nature Chemical Biology
, vol.4
, Issue.4
, pp. 232-234
-
-
Neumann, H.1
Peak-Chew, S.Y.2
Chin, J.W.3
-
15
-
-
70349765673
-
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation
-
Neumann, H., Hancock, S. M., Buning, R., Routh, A., Chapman, L., Somers, J., Owen-Hughes, T., van Noort, J., Rhodes, D., and Chin, J. W. (2009) A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation Mol. Cell 36, 153-163
-
(2009)
Mol. Cell
, vol.36
, pp. 153-163
-
-
Neumann, H.1
Hancock, S.M.2
Buning, R.3
Routh, A.4
Chapman, L.5
Somers, J.6
Owen-Hughes, T.7
Van Noort, J.8
Rhodes, D.9
Chin, J.W.10
-
16
-
-
79953719035
-
Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes
-
Shimko, J. C., North, J. A., Bruns, A. N., Poirier, M. G., and Ottesen, J. J. (2011) Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes J. Mol. Biol. 408, 187-204
-
(2011)
J. Mol. Biol.
, vol.408
, pp. 187-204
-
-
Shimko, J.C.1
North, J.A.2
Bruns, A.N.3
Poirier, M.G.4
Ottesen, J.J.5
-
17
-
-
0025093599
-
Genetic analysis of histone H4: Essential role of lysines subject to reversible acetylation
-
Megee, P. C., Morgan, B. A., Mittman, B. A., and Smith, M. M. (1990) Genetic analysis of histone H4: essential role of lysines subject to reversible acetylation Science 247, 841-845
-
(1990)
Science
, vol.247
, pp. 841-845
-
-
Megee, P.C.1
Morgan, B.A.2
Mittman, B.A.3
Smith, M.M.4
-
18
-
-
0032101179
-
Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase
-
DOI 10.1093/emboj/17.11.3155
-
Zhang, W., Bone, J. R., Edmondson, D. G., Turner, B. M., and Roth, S. Y. (1998) Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase EMBO J. 17, 3155-3167 (Pubitemid 28254387)
-
(1998)
EMBO Journal
, vol.17
, Issue.11
, pp. 3155-3167
-
-
Zhang, W.1
Bone, J.R.2
Edmondson, D.G.3
Turner, B.M.4
Roth, S.Y.5
-
19
-
-
37549023859
-
Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure
-
Wang, X. and Hayes, J. J. (2008) Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure Mol. Cell. Biol. 28, 227-236
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 227-236
-
-
Wang, X.1
Hayes, J.J.2
-
20
-
-
77953727152
-
Structural characterization of H3K56Q nucleosomes and nucleosomal arrays
-
Watanabe, S., Resch, M., Lilyestrom, W., Clark, N., Hansen, J. C., Peterson, C., and Luger, K. (2010) Structural characterization of H3K56Q nucleosomes and nucleosomal arrays Biochim. Biophys. Acta 1799, 480-486
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 480-486
-
-
Watanabe, S.1
Resch, M.2
Lilyestrom, W.3
Clark, N.4
Hansen, J.C.5
Peterson, C.6
Luger, K.7
-
21
-
-
77953805624
-
Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T
-
Tachiwana, H., Kagawa, W., Osakabe, A., Kawaguchi, K., Shiga, T., Hayashi-Takanaka, Y., Kimura, H., and Kurumizaka, H. (2010) Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T Proc. Natl. Acad. Sci. U. S. A. 107, 10454-10459
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 10454-10459
-
-
Tachiwana, H.1
Kagawa, W.2
Osakabe, A.3
Kawaguchi, K.4
Shiga, T.5
Hayashi-Takanaka, Y.6
Kimura, H.7
Kurumizaka, H.8
-
22
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276, 307-326 (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
23
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4.
-
Collaborative Computational Project Number 4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr., Sect. D: Biol. Crystallogr. 50, 760-763.
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
24
-
-
0000560808
-
MOLREP: An Automated Program for Molecular Replacement
-
Vagin, A. and Teplyakov, A. (1997) MOLREP: an Automated Program for Molecular Replacement J. Appl. Crystallogr. 30, 1022-1025 (Pubitemid 127485985)
-
(1997)
Journal of Applied Crystallography
, vol.30
, Issue.6
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
26
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography and NMR system: A new software suite for macromolecular structure determination Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 905-921
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
28
-
-
1642343745
-
Expression and purification of recombinant human histones
-
DOI 10.1016/j.ymeth.2003.10.024, PII S1046202303002883
-
Tanaka, Y., Tawaramoto-Sasanuma, M., Kawaguchi, S., Ohta, T., Yoda, K., Kurumizaka, H., and Yokoyama, S. (2004) Expression and purification of recombinant human histones Methods 33, 3-11 (Pubitemid 38369085)
-
(2004)
Methods
, vol.33
, Issue.1
, pp. 3-11
-
-
Tanaka, Y.1
Tawaramoto-Sasanuma, M.2
Kawaguchi, S.3
Ohta, T.4
Yoda, K.5
Kurumizaka, H.6
Yokoyama, S.7
-
29
-
-
79957997791
-
Crystal structures of human nucleosomes containing major histone H3 variants
-
Tachiwana, H., Osakabe, A., Shiga, T., Miya, Y., Kimura, H., Kagawa, W., and Kurumizaka, H. (2011) Crystal structures of human nucleosomes containing major histone H3 variants Acta Crystallogr., Sect. D: Biol. Crystallogr. 67, 578-583
-
(2011)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.67
, pp. 578-583
-
-
Tachiwana, H.1
Osakabe, A.2
Shiga, T.3
Miya, Y.4
Kimura, H.5
Kagawa, W.6
Kurumizaka, H.7
-
30
-
-
0033039285
-
Preparation of nucleosome core particle from recombinant histones
-
DOI 10.1016/S0076-6879(99)04003-3
-
Luger, K., Rechsteiner, T. J., and Richmond, T. J. (1999) Preparation of nucleosome core particle from recombinant histones Methods Enzymol. 304, 3-19 (Pubitemid 29268874)
-
(1999)
Methods in Enzymology
, vol.304
, pp. 3-19
-
-
Luger, K.1
Rechsteiner, T.J.2
Richmond, T.J.3
-
31
-
-
0036307707
-
Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 A resolution
-
DOI 10.1016/S0022-2836(02)00386-8
-
Davey, C. A., Sargent, D. F., Luger, K., Maeder, A. W., and Richmond, T. J. (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution J. Mol. Biol. 319, 1097-1113 (Pubitemid 34729421)
-
(2002)
Journal of Molecular Biology
, vol.319
, Issue.5
, pp. 1097-1113
-
-
Davey, C.A.1
Sargent, D.F.2
Luger, K.3
Maeder, A.W.4
Richmond, T.J.5
-
32
-
-
20444462007
-
Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle
-
DOI 10.1093/nar/gki663
-
Tsunaka, Y., Kajimura, N., Tate, S., and Morikawa, K. (2005) Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle Nucleic Acids Res. 33, 3424-3434 (Pubitemid 41194485)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.10
, pp. 3424-3434
-
-
Tsunaka, Y.1
Kajimura, N.2
Tate, S.-I.3
Morikawa, K.4
-
33
-
-
22444448143
-
A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response
-
DOI 10.1038/nature03714
-
Masumoto, H., Hawke, D., Kobayashi, R., and Verreault, A. (2005) A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response Nature 436, 294-298 (Pubitemid 41021284)
-
(2005)
Nature
, vol.436
, Issue.7048
, pp. 294-298
-
-
Masumoto, H.1
Hawke, D.2
Kobayashi, R.3
Verreault, A.4
-
34
-
-
18844413266
-
Acetylation in histone H3 globular domain regulates gene expression in yeast
-
DOI 10.1016/j.cell.2005.03.011, PII S0092867405002837
-
Xu, F., Zhang, K., and Grunstein, M. (2005) Acetylation in histone H3 globular domain regulates gene expression in yeast Cell 121, 375-385 (Pubitemid 40692298)
-
(2005)
Cell
, vol.121
, Issue.3
, pp. 375-385
-
-
Xu, F.1
Zhang, K.2
Grunstein, M.3
-
35
-
-
34547277498
-
Genome-Wide Replication-Independent Histone H3 Exchange Occurs Predominantly at Promoters and Implicates H3 K56 Acetylation and Asf1
-
DOI 10.1016/j.molcel.2007.07.011, PII S1097276507004844
-
Rufiange, A., Jacques, P. E., Bhat, W., Robert, F., and Nourani, A. (2007) Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1 Mol. Cell 27, 393-405 (Pubitemid 47135636)
-
(2007)
Molecular Cell
, vol.27
, Issue.3
, pp. 393-405
-
-
Rufiange, A.1
Jacques, P.-E.2
Bhat, W.3
Robert, F.4
Nourani, A.5
-
36
-
-
47549105301
-
Acetylated Lysine 56 on Histone H3 Drives Chromatin Assembly after Repair and Signals for the Completion of Repair
-
DOI 10.1016/j.cell.2008.06.035, PII S0092867408008222
-
Chen, C. C., Carson, J. J., Feser, J., Tamburini, B., Zabaronick, S., Linger, J., and Tyler, J. K. (2008) Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair Cell 134, 231-243 (Pubitemid 352010334)
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 231-243
-
-
Chen, C.-C.1
Carson, J.J.2
Feser, J.3
Tamburini, B.4
Zabaronick, S.5
Linger, J.6
Tyler, J.K.7
-
37
-
-
47549092547
-
Acetylation of Histone H3 Lysine 56 Regulates Replication-Coupled Nucleosome Assembly
-
DOI 10.1016/j.cell.2008.06.018, PII S0092867408007708
-
Li, Q., Zhou, H., Wurtele, H., Davies, B., Horazdovsky, B., Verreault, A., and Zhang, Z. (2008) Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assembly Cell 134, 244-255 (Pubitemid 352010333)
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 244-255
-
-
Li, Q.1
Zhou, H.2
Wurtele, H.3
Davies, B.4
Horazdovsky, B.5
Verreault, A.6
Zhang, Z.7
-
38
-
-
80051685994
-
Crystal structure of the human centromeric nucleosome containing CENP-A
-
Tachiwana, H., Kagawa, W., Shiga, T., Osakabe, A., Miya, Y., Saito, K., Hayashi-Takanaka, Y., Oda, T., Sato, M., Park, S. Y., Kimura, H., and Kurumizaka, H. (2011) Crystal structure of the human centromeric nucleosome containing CENP-A Nature 476, 232-235
-
(2011)
Nature
, vol.476
, pp. 232-235
-
-
Tachiwana, H.1
Kagawa, W.2
Shiga, T.3
Osakabe, A.4
Miya, Y.5
Saito, K.6
Hayashi-Takanaka, Y.7
Oda, T.8
Sato, M.9
Park, S.Y.10
Kimura, H.11
Kurumizaka, H.12
-
39
-
-
34147177521
-
Organismal differences in post-translational modifications in histones H3 and H4
-
DOI 10.1074/jbc.M607900200
-
Garcia, B. A., Hake, S. B., Diaz, R. L., Kauer, M., Morris, S. A., Recht, J., Shabanowitz, J., Mishra, N., Strahl, B. D., Allis, C. D., and Hunt, D. F. (2007) Organismal differences in post-translational modifications in histones H3 and H4 J. Biol. Chem. 282, 7641-7655 (Pubitemid 47093632)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.10
, pp. 7641-7655
-
-
Garcia, B.A.1
Hake, S.B.2
Diaz, R.L.3
Kauer, M.4
Morris, S.A.5
Recht, J.6
Shabanowitz, J.7
Mishra, N.8
Strahl, B.D.9
Allis, C.D.10
Hunt, D.F.11
-
40
-
-
78650475567
-
Coordinated allele-specific histone acetylation at the differentially methylated regions of imprinted genes
-
Singh, P., Cho, J., Tsai, S. Y., Rivas, G. E., Larson, G. P., and Szabó, P. E. (2010) Coordinated allele-specific histone acetylation at the differentially methylated regions of imprinted genes Nucleic Acids Res. 38, 7974-7990
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7974-7990
-
-
Singh, P.1
Cho, J.2
Tsai, S.Y.3
Rivas, G.E.4
Larson, G.P.5
Szabó, P.E.6
-
41
-
-
67650293314
-
H3K64 trimethylation marks heterochromatin and is dynamically remodeled during developmental reprogramming
-
Daujat, S., Weiss, T., Mohn, F., Lange, U. C., Ziegler-Birling, C., Zeissler, U., Lappe, M., Schübeler, D., Torres-Padilla, M. E., and Schneider, R. (2009) H3K64 trimethylation marks heterochromatin and is dynamically remodeled during developmental reprogramming Nat. Struct. Mol. Biol. 16, 777-781
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 777-781
-
-
Daujat, S.1
Weiss, T.2
Mohn, F.3
Lange, U.C.4
Ziegler-Birling, C.5
Zeissler, U.6
Lappe, M.7
Schübeler, D.8
Torres-Padilla, M.E.9
Schneider, R.10
-
42
-
-
0028801404
-
Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription
-
Kruger, W., Peterson, C. L., Sil, A., Coburn, C., Arents, G., Moudrianakis, E. N., and Herskowitz, I. (1995) Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription Genes Dev. 9, 2770-2779
-
(1995)
Genes Dev.
, vol.9
, pp. 2770-2779
-
-
Kruger, W.1
Peterson, C.L.2
Sil, A.3
Coburn, C.4
Arents, G.5
Moudrianakis, E.N.6
Herskowitz, I.7
-
43
-
-
0030699092
-
Sin mutations of histone H3: Influence on nucleosome core structure and function
-
Kurumizaka, H. and Wolffe, A. P. (1997) Sin mutations of histone H3: influence on nucleosome core structure and function Mol. Cell. Biol. 17, 6953-6969 (Pubitemid 27505926)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.12
, pp. 6953-6969
-
-
Kurumizaka, H.1
Wolffe, A.P.2
-
44
-
-
0030893061
-
- versions of histone H4 on yeast chromatin structure and function
-
DOI 10.1093/emboj/16.8.2086
-
Wechser, M. A., Kladde, M. P., Alfieri, J. A., and Peterson, C. L. (1997) Effects of Sin- versions of histone H4 on yeast chromatin structure and function EMBO J. 16, 2086-2095 (Pubitemid 27170969)
-
(1997)
EMBO Journal
, vol.16
, Issue.8
, pp. 2086-2095
-
-
Wechser, M.A.1
Kladde, M.P.2
Alfieri, J.A.3
Peterson, C.L.4
-
45
-
-
1542320757
-
Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions
-
DOI 10.1038/sj.emboj.7600046
-
Muthurajan, U. M., Bao, Y., Forsberg, L. J., Edayathumangalam, R. S., Dyer, P. N., White, C. L., and Luger, K. (2004) Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J. 23, 260-271 (Pubitemid 38294491)
-
(2004)
EMBO Journal
, vol.23
, Issue.2
, pp. 260-271
-
-
Muthurajan, U.M.1
Bao, Y.2
Forsberg, L.J.3
Edayathumangalam, R.S.4
Dyer, P.N.5
White, C.L.6
Luger, K.7
-
46
-
-
69949176722
-
Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding
-
Manohar, M., Mooney, A. M., North, J. A., Nakkula, R. J., Picking, J. W., Edon, A., Fishel, R., Poirier, M. G., and Ottesen, J. J. (2009) Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding J. Biol. Chem. 284, 23312-23321
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 23312-23321
-
-
Manohar, M.1
Mooney, A.M.2
North, J.A.3
Nakkula, R.J.4
Picking, J.W.5
Edon, A.6
Fishel, R.7
Poirier, M.G.8
Ottesen, J.J.9
-
47
-
-
27644467857
-
Insights into the role of histone H3 and histone H4 core modifiable residues in Saccharomyces cerevisiae
-
DOI 10.1128/MCB.25.22.10060-10070.2005
-
Hyland, E. M., Cosgrove, M. S., Molina, H., Wang, D., Pandey, A., Cottee, R. J., and Boeke, J. D. (2005) Insights into the role of histone H3 and histone H4 core modifiable residues in Saccharomyces cerevisiae Mol. Cell. Biol. 25, 10060-10070 (Pubitemid 41572751)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.22
, pp. 10060-10070
-
-
Hyland, E.M.1
Cosgrove, M.S.2
Molina, H.3
Wang, D.4
Pandey, A.5
Cottee, R.J.6
Boeke, J.D.7
-
48
-
-
29144491494
-
Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition
-
DOI 10.1021/pr050188r
-
Garcia, B. A., Busby, S. A., Shabanowitz, J., Hunt, D. F., and Mishra, N. (2005) Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition J. Proteome Res. 4, 2032-2042 (Pubitemid 41814269)
-
(2005)
Journal of Proteome Research
, vol.4
, Issue.6
, pp. 2032-2042
-
-
Garcia, B.A.1
Busby, S.A.2
Shabanowitz, J.3
Hunt, D.F.4
Mishra, N.5
-
49
-
-
15944416371
-
Histone H4 lysine 91 acetylation: A core domain modificationassociated with chromatin assembly
-
DOI 10.1016/j.molcel.2005.02.031
-
Ye, J., Ai, X., Eugeni, E. E., Zhang, L., Carpenter, L. R., Jelinek, M. A., Freitas, M. A., and Parthun, M. R. (2005) Histone H4 lysine 91 acetylation a core domain modification associated with chromatin assembly Mol. Cell 18, 123-130 (Pubitemid 40444653)
-
(2005)
Molecular Cell
, vol.18
, Issue.1
, pp. 123-130
-
-
Ye, J.1
Ai, X.2
Eugeni, E.E.3
Zhang, L.4
Carpenter, L.R.5
Jelinek, M.A.6
Freitas, M.A.7
Parthun, M.R.8
-
50
-
-
1942502859
-
The nuclear Hat1p/Hat2p complex: A molecular link between type B histone acetyltransferases and chromatin assembly
-
DOI 10.1016/S1097-2765(04)00184-4, PII S1097276504001844
-
Ai, X. and Parthun, M. R. (2004) The nuclear Hat1p/Hat2p complex: a molecular link between type B histone acetyltransferases and chromatin assembly Mol. Cell 14, 195-205 (Pubitemid 38515647)
-
(2004)
Molecular Cell
, vol.14
, Issue.2
, pp. 195-205
-
-
Ai, X.1
Parthun, M.R.2
-
51
-
-
70349759491
-
BBAP monoubiquitylates histone H4 at lysine 91 and selectively modulates the DNA damage response
-
Yan, Q., Dutt, S., Xu, R., Graves, K., Juszczynski, P., Manis, J. P., and Shipp, M. A. (2009) BBAP monoubiquitylates histone H4 at lysine 91 and selectively modulates the DNA damage response Mol. Cell 36, 110-120
-
(2009)
Mol. Cell
, vol.36
, pp. 110-120
-
-
Yan, Q.1
Dutt, S.2
Xu, R.3
Graves, K.4
Juszczynski, P.5
Manis, J.P.6
Shipp, M.A.7
-
52
-
-
33745950498
-
Chromatin Assembly with H3 Histones: Full Throttle Down Multiple Pathways
-
DOI 10.1016/S0070-2153(06)74002-9, PII S0070215306740029
-
Schwartz, B. E. and Ahmad, K. (2006) Chromatin Assembly with H3 Histones: Full Throttle Down Multiple Pathways Curr. Top. Dev. Biol. 74, 31-55 (Pubitemid 44062703)
-
(2006)
Current Topics in Developmental Biology
, vol.74
, pp. 31-55
-
-
Schwartz, B.E.1
Ahmad, K.2
-
53
-
-
0037172665
-
Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain
-
DOI 10.1016/S0960-9822(02)00901-6, PII S0960982202009016
-
Feng, Q., Wang, H., Ng, H. H., Erdjument-Bromage, H., Tempst, P., Struhl, K., and Zhang, Y. (2002) Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain Curr. Biol. 12, 1052-1058 (Pubitemid 34703339)
-
(2002)
Current Biology
, vol.12
, Issue.12
, pp. 1052-1058
-
-
Feng, Q.1
Wang, H.2
Ng, H.H.3
Erdjument-Bromage, H.4
Tempst, P.5
Struhl, K.6
Zhang, Y.7
-
54
-
-
0037524702
-
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation
-
DOI 10.1016/S1097-2765(03)00091-1
-
Krogan, N. J., Dover, J., Wood, A., Schneider, J., Heidt, J., Boateng, M. A., Dean, K., Ryan, O. W., Golshani, A., Johnston, M., Greenblatt, J. F., and Shilatifard, A. (2003) The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation Mol. Cell 11, 721-729 (Pubitemid 36385125)
-
(2003)
Molecular Cell
, vol.11
, Issue.3
, pp. 721-729
-
-
Krogan, N.J.1
Dover, J.2
Wood, A.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Ryan, O.W.8
Golshani, A.9
Johnston, M.10
Greenblatt, J.F.11
Shilatifard, A.12
-
55
-
-
9244252580
-
Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks
-
DOI 10.1038/nature03114
-
Huyen, Y., Zgheib, O., Ditullio, R. A., Gorgoulis, V. G., Zacharatos, P., Petty, T. J., Sheston, E. A., Mellert, H. S., Stavridi, E. S., and Halazonetis, T. D. (2004) Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks Nature 432, 406-411 (Pubitemid 39551676)
-
(2004)
Nature
, vol.432
, Issue.7015
, pp. 406-411
-
-
Huyen, Y.1
Zgheib, O.2
DiTullio Jr., R.A.3
Gorgoulis, V.G.4
Zacharatos, P.5
Petty, T.J.6
Sheston, E.A.7
Mellert, H.S.8
Stavridi, E.S.9
Halazonetis, T.D.10
-
56
-
-
53549124960
-
The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure
-
Lu, X., Simon, M. D., Chodaparambil, J. V., Hansen, J. C., Shokat, K. M., and Luger, K. (2008) The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure Nat. Struct. Mol. Biol. 15, 1122-1124
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1122-1124
-
-
Lu, X.1
Simon, M.D.2
Chodaparambil, J.V.3
Hansen, J.C.4
Shokat, K.M.5
Luger, K.6
-
57
-
-
54349105157
-
Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4
-
Du, H. N., Fingerman, I. M., and Briggs, S. D. (2008) Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4 Genes Dev. 22, 2786-2798
-
(2008)
Genes Dev.
, vol.22
, pp. 2786-2798
-
-
Du, H.N.1
Fingerman, I.M.2
Briggs, S.D.3
-
58
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
DOI 10.1016/j.cell.2005.10.023, PII S0092867405011566
-
Carrozza, M. J., Li, B., Florens, L., Suganuma, T., Swanson, S. K., Lee, K. K., Shia, W. J., Anderson, S., Yates, J., Washburn, M. P., and Workman, J. L. (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription Cell 123, 581-592 (Pubitemid 41608462)
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.-J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
59
-
-
29144468972
-
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to pol II elongation
-
DOI 10.1016/j.molcel.2005.11.021, PII S1097276505018083
-
Joshi, A. A. and Struhl, K. (2005) Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation Mol. Cell 20, 971-978 (Pubitemid 41814885)
-
(2005)
Molecular Cell
, vol.20
, Issue.6
, pp. 971-978
-
-
Joshi, A.A.1
Struhl, K.2
-
60
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
DOI 10.1016/j.cell.2005.10.025, PII S0092867405011591
-
Keogh, M. C., Kurdistani, S. K., Morris, S. A., Ahn, S. H., Podolny, V., Collins, S. R., Schuldiner, M., Chin, K., Punna, T., Thompson, N. J., Boone, C., Emili, A., Weissman, J. S., Hughes, T. R., Strahl, B. D., Grunstein, M., Greenblatt, J. F., Buratowski, S., and Krogan, N. J. (2005) Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex Cell 123, 593-605 (Pubitemid 41608463)
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 593-605
-
-
Keogh, M.-C.1
Kurdistani, S.K.2
Morris, S.A.3
Ahn, S.H.4
Podolny, V.5
Collins, S.R.6
Schuldiner, M.7
Chin, K.8
Punna, T.9
Thompson, N.J.10
Boone, C.11
Emili, A.12
Weissman, J.S.13
Hughes, T.R.14
Strahl, B.D.15
Grunstein, M.16
Greenblatt, J.F.17
Buratowski, S.18
Krogan, N.J.19
-
61
-
-
34249099730
-
Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
-
DOI 10.1126/science.1139004
-
Li, B., Gogol, M., Carey, M., Lee, D., Seidel, C., and Workman, J. L. (2007) Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin Science 316, 1050-1054 (Pubitemid 46799495)
-
(2007)
Science
, vol.316
, Issue.5827
, pp. 1050-1054
-
-
Li, B.1
Gogol, M.2
Carey, M.3
Lee, D.4
Seidel, C.5
Workman, J.L.6
-
62
-
-
71749121455
-
The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate
-
Li, Y., Trojer, P., Xu, C. F., Cheung, P., Kuo, A., Drury, W. J., 3rd, Qiao, Q., Neubert, T. A., Xu, R. M., Gozani, O., and Reinberg, D. (2009) The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate J. Biol. Chem. 284, 34283-34295
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 34283-34295
-
-
Li, Y.1
Trojer, P.2
Xu, C.F.3
Cheung, P.4
Kuo, A.5
Drury III, W.J.6
Qiao, Q.7
Neubert, T.A.8
Xu, R.M.9
Gozani, O.10
Reinberg, D.11
-
63
-
-
77951249838
-
A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription
-
Du, H. N. and Briggs, S. D. (2010) A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription J. Biol. Chem. 285, 11704-11713
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 11704-11713
-
-
Du, H.N.1
Briggs, S.D.2
-
64
-
-
4444378379
-
Histone variant H2ABbd confers lower stability to the nucleosome
-
DOI 10.1038/sj.embor.7400182
-
Gautier, T., Abbott, D. W., Molla, A., Verdel, A., Ausio, J., and Dimitrov, S. (2004) Histone variant H2ABbd confers lower stability to the nucleosome EMBO Rep. 5, 715-720 (Pubitemid 39173008)
-
(2004)
EMBO Reports
, vol.5
, Issue.7
, pp. 715-720
-
-
Gautier, T.1
Abbott, D.W.2
Molla, A.3
Verdel, A.4
Ausio, J.5
Dimitrov, S.6
-
65
-
-
4444312848
-
Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA
-
DOI 10.1038/sj.emboj.7600316
-
Bao, Y., Konesky, K., Park, Y. -J., Rosu, S., Dyer, P. N., Rangasamy, D., Tremethick, D. J., Laybourn, P., and Luger, K. (2004) Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA EMBO J. 23, 3314-3324 (Pubitemid 39209155)
-
(2004)
EMBO Journal
, vol.23
, Issue.16
, pp. 3314-3324
-
-
Bao, Y.1
Konesky, K.2
Park, Y.-J.3
Rosu, S.4
Dyer, P.N.5
Rangasamy, D.6
Tremethick, D.J.7
Laybourn, P.J.8
Luger, K.9
-
66
-
-
33748931801
-
Dissection of the unusual structural and functional properties of the variant H2A.Bbd nucleosome
-
DOI 10.1038/sj.emboj.7601310, PII 7601310
-
Doyen, C. -M., Montel, F., Gautier, T., Menoni, H., Claudet, C., Delacour-Larose, M., Angelov, D., Hamiche, A., Bednar, J., Faivre-Moskalenko, C., Bouvet, P., and Dimitrov, S. (2006) Dissection of the unusual structural and functional properties of the variant H2A.Bbd nucleosome EMBO J. 25, 4234-4244 (Pubitemid 44435221)
-
(2006)
EMBO Journal
, vol.25
, Issue.18
, pp. 4234-4244
-
-
Doyen, C.-M.1
Montel, F.2
Gautier, T.3
Menoni, H.4
Claudet, C.5
Delacour-Larose, M.6
Angelov, D.7
Hamiche, A.8
Bednar, J.9
Faivre-Moskalenko, C.10
Bouvet, P.11
Dimitrov, S.12
-
67
-
-
69049085673
-
The incorporation of the novel histone variant H2AL2 confers unusual structural and functional properties of the nucleosome
-
Syed, S. H., Boulard, M., Shukla, M. S., Gautier, T., Travers, A., Bednar, J., Faivre-Moskalenko, C., Dimitrov, S., and Agelov, D. (2009) The incorporation of the novel histone variant H2AL2 confers unusual structural and functional properties of the nucleosome Nucleic Acids Res. 37, 4684-4695
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4684-4695
-
-
Syed, S.H.1
Boulard, M.2
Shukla, M.S.3
Gautier, T.4
Travers, A.5
Bednar, J.6
Faivre-Moskalenko, C.7
Dimitrov, S.8
Agelov, D.9
-
68
-
-
33750477650
-
Structural Basis for the Histone Chaperone Activity of Asf1
-
DOI 10.1016/j.cell.2006.08.047, PII S0092867406012736
-
English, C. M., Adkins, M. W., Carson, J. J., Churchill, M. E. A., and Tyler, J. K. (2006) Structural basis for the histone chaperone activity of Asf1 Cell 127, 495-508 (Pubitemid 44647420)
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 495-508
-
-
English, C.M.1
Adkins, M.W.2
Carson, J.J.3
Churchill, M.E.A.4
Tyler, J.K.5
-
69
-
-
33846574739
-
Structure of the yeast histone H3-ASFI interaction: Implications for chaperone mechanism, species-specific interactions, and epigenetics
-
Antczak, A. J., Tsubota, T., Kaufman, P. D., and Berger, J. M. (2006) Structure of the yeast histone H3-ASFI interaction: implications for chaperone mechanism, species-specific interactions, and epigenetics. BMC Struct. Biol. 6:26.
-
(2006)
BMC Struct. Biol.
, vol.626
-
-
Antczak, A.J.1
Tsubota, T.2
Kaufman, P.D.3
Berger, J.M.4
-
70
-
-
33847226680
-
Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4
-
DOI 10.1038/nature05613, PII NATURE05613
-
Natsume, R., Eitoku, M., Akai, Y., Sano, N., Horikoshi, M., and Senda, T. (2007) Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4 Nature 446, 338-341 (Pubitemid 46437114)
-
(2007)
Nature
, vol.446
, Issue.7133
, pp. 338-341
-
-
Natsume, R.1
Eitoku, M.2
Akai, Y.3
Sano, N.4
Horikoshi, M.5
Senda, T.6
-
71
-
-
69549124552
-
Proteome-wide prediction of acetylation substrates
-
Basu, A., Rose, K. L., Zhang, J., Beavis, R. C., Ueberheide, B., Garcia, B. A., Chait, B., Zhao, Y., Hunt, D. F., Segal, E., Allis, C. D., and Hake, S. B. (2009) Proteome-wide prediction of acetylation substrates Proc. Natl. Acad. Sci. U. S. A. 106, 13785-13790
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 13785-13790
-
-
Basu, A.1
Rose, K.L.2
Zhang, J.3
Beavis, R.C.4
Ueberheide, B.5
Garcia, B.A.6
Chait, B.7
Zhao, Y.8
Hunt, D.F.9
Segal, E.10
Allis, C.D.11
Hake, S.B.12
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