Allele and haplotype diversity of X-chromosomal STRs in Ivory Coast

International Journal of Legal Medicine

Volumn 125, Issue 5, 2011, Pages 749-752

  Pasino, Serena ^a   Caratti, Stefano ^a   Del Pero, Massimiliano ^a   Santovito, Alfredo ^a   Torre, Carlo ^a   Robino, Carlo ^a  

^a UNIVERSITY OF TURIN   (Italy)

Author keywords

Haplotype; Ivory Coast; Linkage disequilibrium; Short tandem repeat; X chromosome

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; COTE D'IVOIRE; FEMALE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE POOL; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; HETEROZYGOTE DETECTION; HUMAN; MALE; PATERNITY; POPULATION GENETICS; X CHROMOSOME;

CHROMOSOMES, HUMAN, X; COTE D'IVOIRE; FEMALE; GENE FREQUENCY; GENE POOL; GENETIC LOCI; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; HETEROZYGOTE DETECTION; HUMANS; LINKAGE DISEQUILIBRIUM; MALE; MICROSATELLITE REPEATS; PATERNITY; POLYMORPHISM, GENETIC;

EID: 80052306638     PISSN: 09379827     EISSN: 14371596     Source Type: Journal    
DOI: 10.1007/s00414-011-0591-4     Document Type: Article

References (32)

1. R Szibor 2007 X-chromosomal markers, past, present and future Forensic Sci Int Genet 1 93 99 19083736 10.1016/j.fsigen.2007.03.003 (Pubitemid 46760407)
2. R Szibor S Hering E Kuhlisch I Plate S Demberger M Krawczak J Edelmann 2005 Haplotyping of STR cluster DXS6801-DXS6809-DXS6789 on Xq21 provides a powerful tool for kinship testing Int J Legal Med 119 363 369 16096759 10.1007/s00414-005-0550-z (Pubitemid 41586731)
3. S Hering C Augustin J Edelmann, et al. 2006 DXS10079, DXS10074 and DXS10075 are STRs located within a 280-kb region of Xq12 and provide stable haplotypes useful for complex kinship cases Int J Legal Med 120 337 345 16344967 10.1007/s00414-005-0061-y (Pubitemid 44630572)
4. SF Schaffner 2004 The X chromosome in population genetics Nat Rev Genet 5 43 51 14708015 10.1038/nrg1247 1:CAS:528:DC%2BD2cXht1yqtQ%3D%3D (Pubitemid 38055335)
5. I Gomes C Alves K Maxzud, et al. 2007 Analysis of 10 XSTRs in three African populations Forensic Sci Int Genet 1 208 211 19083759 10.1016/j.fsigen.2007.01.001 (Pubitemid 46760385)
6. M Poetsch D El-Mostaqim F Tschentscher EN Browne C Timmann RD Horstmann N Von Wurmb-Schwark 2009 Allele frequencies of 11 X-chromosomal loci in a population sample from Ghana Int J Legal Med 123 81 83 18607615 10.1007/s00414-008-0251-5
7. A Bekada S Benhamamouch A Boudjema M Fodil S Menegon C Torre C Robino 2010 Analysis of 21 X-chromosomal STRs in an Algerian population sample Int J Legal Med 124 287 294 20012442 10.1007/s00414-009-0397-9
8. R Szibor J Edelmann S Hering, et al. 2003 Cell line DNA typing in forensic genetics-the necessity of reliable standards Forensic Sci Int 138 37 43 14642717 10.1016/j.forsciint.2003.09.002 1:CAS:528:DC%2BD3sXpt1WitL8%3D (Pubitemid 37464729)
9. R Szibor S Hering J Edelmann 2006 A new Web site compiling forensic chromosome X research is now online Int J Legal Med 120 252 254 16133565 10.1007/s00414-005-0029-y
10. L Excoffier G Laval S Schneider 2005 Arlequin ver. 3.0: An integrated software package for population genetics data analysis Evol Bioinform Online 1 47 50 1:CAS:528:DC%2BD28XjsFSltg%3D%3D
11. HJ Bandelt P Forster BC Sykes MB Richards 1995 Mitochondrial portraits of human populations using median networks Genetics 141 743 753 8647407 1:STN:280:DyaK287gvFKitQ%3D%3D
12. HJ Bandelt P Forster A Röhl 1999 Median-joining networks for inferring intraspecific phylogenies Mol Biol Evol 16 37 48 10331250 1:CAS:528:DyaK1MXjvVGltA%3D%3D (Pubitemid 29024937)
13. T Hundertmark S Hering J Edelmann C Augustin I Plate R Szibor 2008 The STR cluster DXS10148-DXS8378-DXS10135 provides a powerful tool for X-chromosomal haplotyping at Xp22 Int J Legal Med 122 489 492 18688634 10.1007/s00414-008- 0277-8
14. C Robino F Crobu C Di Gaetano, et al. 2008 Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample Int J Legal Med 122 251 255 17909833 10.1007/s00414-007-0203-5 1:STN:280:DC%2BD1c3ksVentw%3D%3D (Pubitemid 351534091)
15. S Plaza F Calafell A Helal N Bouzerna G Lefranc J Bertranpetit D Comas 2003 Joining the pillars of Hercules: mtDNA sequences show multidirectional gene flow in the western Mediterranean Ann Hum Genet 67 312 328 12914566 10.1046/j.1469-1809.2003.00039.x 1:CAS:528:DC%2BD3sXnvVSqurk%3D (Pubitemid 38312836)
16. Inturri S, Menegon S, Amoroso A, Torre C, Robino C (2010) Linkage and linkage disequilibrium analysis of X-STRs in Italian families. Forensic Sci Int Genet. doi: 10.1016/j.fsigen.2010.10.012
17. Hill CR, Duewer DL, Kline MC et al (2010) Concordance and population studies along with stutter and peak height ratio analysis for the PowerPlex((R)) ESX 17 and ESI 17 Systems. Forensic Sci Int Genet. doi: 10.1016/j.fsigen.2010. 03.014
18. C Leibelt B Budowle P Collins, et al. 2003 Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles Forensic Sci Int 133 220 227 12787655 10.1016/S0379-0738(03)00035-5 1:CAS:528:DC%2BD3sXkt1ynur4%3D (Pubitemid 36638299)
19. AO Tillmar P Mostad T Egeland B Lindblom G Holmlund K Montelius 2008 Analysis of linkage and linkage disequilibrium for eight X-STR markers Forensic Sci Int Genet 3 37 41 19083865 10.1016/j.fsigen.2008.09.006 1:CAS:528: DC%2BC3cXjsFCjt78%3D
20. SA Tishkoff SM Williams 2002 Genetic analysis of African populations: human evolution and complex disease Nat Rev Genet 3 611 621 12154384 10.1038/ni0702-611 1:CAS:528:DC%2BD38XlslamsLk%3D (Pubitemid 34752469)
21. Tillmar AO, Egeland T, Lindblom B, Holmlund G, Mostad P (2010) Using X-chromosomal markers in relationship testing: calculation of likelihood ratios taking both linkage and linkage disequilibrium into account. Forensic Sci Int Genet. doi: 10.1016/j.fsigen.2010.11.004
22. C Robino A Giolitti S Gino C Torre 2006 Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample Int J Legal Med 120 315 318 16862443 10.1007/s00414-006-0115-9 1:STN:280:DC%2BD28votlyjsA%3D%3D
23. I Gomes M Prinz R Pereira, et al. 2007 Genetic analysis of three US population groups using an X-chromosomal STR decaplex Int J Legal Med 121 198 203 17237948 10.1007/s00414-006-0146-2 (Pubitemid 46866576)
24. R Pereira I Gomes A Amorim L Gusmao 2007 Genetic diversity of 10 X chromosome STRs in northern Portugal Int J Legal Med 121 192 197 17206433 10.1007/s00414-006-0144-4 (Pubitemid 46866575)
25. M Aler P Sánchez-Diz I Gomes, et al. 2007 Genetic data of 10 X-STRs in a Spanish population sample Forensic Sci Int 173 193 196 17320320 10.1016/j.forsciint.2006.10.023 1:CAS:528:DC%2BD2sXhtF2rtrnP (Pubitemid 47588728)
26. MA Tariq O Ullah SA Riazuddin S Riazuddin 2008 Allele frequency distribution of 13 X-chromosomal STR loci in Pakistani population Int J Legal Med 122 525 528 18629532 10.1007/s00414-008-0263-1
27. MA Tariq MF Sabir SA Riazuddin S Riazuddin 2009 Haplotype analysis of two X-chromosome STR clusters in the Pakistani population Int J Legal Med 123 85 87 19011887 10.1007/s00414-008-0294-7
28. R Szibor J Edelmann S Hering I Gomes L Gusmão 2009 Nomenclature discrepancies in the HPRTB short tandem repeat Int J Legal Med 123 185 186 19137322 10.1007/s00414-008-0314-7
29. SA Tishkoff FA Reed FR Friedlaender, et al. 2009 The genetic structure and history of Africans and African Americans Science 324 1035 1044 19407144 10.1126/science.1172257 1:CAS:528:DC%2BD1MXmtVKlsbs%3D
30. SS Santos-Lopes RW Pereira IJ Wilson SD Pena 2007 A worldwide phylogeography for the human X chromosome PLoS One 2 e557 17593958 10.1371/journal.pone.0000557 (Pubitemid 351260218)
31. AO Karlsson G Holmlund T Egeland P Mostad 2007 DNA-testing for immigration cases: the risk of erroneous conclusions Forensic Sci Int 172 144 149 17317060 10.1016/j.forsciint.2006.12.015 1:CAS:528:DC%2BD2sXhtVWhsbvJ (Pubitemid 47361585)
32. N Pinto L Gusmão A Amorim 2011 X-chromosome markers in kinship testing: a generalisation of the IBD approach identifying situations where their contribution is crucial Forensic Sci Int Genet 5 27 32 20457080 10.1016/j.fsigen.2010.01.011 1:CAS:528:DC%2BC3MXmsFajsg%3D%3D