메뉴 건너뛰기




Volumn 37, Issue 16, 2009, Pages 5559-5567

Stability of intramolecular quadruplexes: Sequence effects in the central loop

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; GUANINE QUADRUPLEX; POTASSIUM; SODIUM; THYMINE;

EID: 70449729915     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp563     Document Type: Article
Times cited : (71)

References (44)
  • 5
    • 35748937058 scopus 로고    scopus 로고
    • Quartets in G-major. The First International Meeting on Quadruplex DNA
    • Bates,P., Mergny,J.L. and Yang,D. (2007) Quartets in G-major. The First International Meeting on Quadruplex DNA. EMBO Rep., 8, 1003-1010.
    • (2007) EMBO Rep. , vol.8 , pp. 1003-1010
    • Bates, P.1    Mergny, J.L.2    Yang, D.3
  • 6
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd,A.K., Johnston,M. and Neidle,S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33, 2901-2907.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 7
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert,J.L. and Balasubramanian,S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 8
    • 47649101029 scopus 로고    scopus 로고
    • Hunting G-quadruplexes
    • Huppert,J.L. (2008) Hunting G-quadruplexes. Biochimie, 90, 1140-1148.
    • (2008) Biochimie , vol.90 , pp. 1140-1148
    • Huppert, J.L.1
  • 10
    • 38049030699 scopus 로고    scopus 로고
    • Human telomere, oncogenic promoter and 50-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics
    • Patel,D.J., Phan,A.T. and Kuryavyi,V. (2007) Human telomere, oncogenic promoter and 50-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res., 35, 7429-7455.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7429-7455
    • Patel, D.J.1    Phan, A.T.2    Kuryavyi, V.3
  • 11
    • 47849105417 scopus 로고    scopus 로고
    • Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions
    • Qin,Y. and Hurley,L.H. (2008) Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions. Biochimie, 90, 1149-1171.
    • (2008) Biochimie , vol.90 , pp. 1149-1171
    • Qin, Y.1    Hurley, L.H.2
  • 12
    • 38849085810 scopus 로고    scopus 로고
    • A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA g-quadruplexes
    • Bugaut,A. and Balasubramanian,S. (2008) A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA g-quadruplexes. Biochemistry, 47, 689-697.
    • (2008) Biochemistry , vol.47 , pp. 689-697
    • Bugaut, A.1    Balasubramanian, S.2
  • 13
    • 0038728819 scopus 로고    scopus 로고
    • Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes
    • Risitano,A. and Fox,K.R. (2003) Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes. Biochemistry, 42, 6507-6513.
    • (2003) Biochemistry , vol.42 , pp. 6507-6513
    • Risitano, A.1    Fox, K.R.2
  • 14
    • 0037588993 scopus 로고    scopus 로고
    • The stability of intramolecular DNA quadruplexes with extended loops forming inter- and intra-loop duplexes
    • Risitano,A. and Fox,K.R. (2003) The stability of intramolecular DNA quadruplexes with extended loops forming inter- and intra-loop duplexes. Org. Biomol. Chem., 1, 1852-1855.
    • (2003) Org. Biomol. Chem. , vol.1 , pp. 1852-1855
    • Risitano, A.1    Fox, K.R.2
  • 16
    • 3042671689 scopus 로고    scopus 로고
    • Influence of loop size on the stability of intramolecular DNA quadruplexes
    • Risitano,A. and Fox,K.R. (2004) Influence of loop size on the stability of intramolecular DNA quadruplexes. Nucleic Acids Res., 32, 2598-2606.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 2598-2606
    • Risitano, A.1    Fox, K.R.2
  • 17
    • 0027207078 scopus 로고
    • Effect of thymine tract length on the structure and stability of model telomeric sequences
    • Guo,Q., Lu,M. and Kallenbach,N.R. (1993) Effect of thymine tract length on the structure and stability of model telomeric sequences. Biochemistry, 32, 3596-3603.
    • (1993) Biochemistry , vol.32 , pp. 3596-3603
    • Guo, Q.1    Lu, M.2    Kallenbach, N.R.3
  • 18
    • 27944459311 scopus 로고    scopus 로고
    • Role of loop residues and cations on the formation and stability of dimeric DNA G-quadruplexes
    • Cevec,M. and Plavec,J. (2005) Role of loop residues and cations on the formation and stability of dimeric DNA G-quadruplexes. Biochemistry, 44, 15238-15246.
    • (2005) Biochemistry , vol.44 , pp. 15238-15246
    • Cevec, M.1    Plavec, J.2
  • 19
  • 20
    • 48349103695 scopus 로고    scopus 로고
    • Effect of loop length variation on quadruplex-Watson Crick duplex competition
    • Kumar,N., Sahoo,B., Varun,K.A.S., Maiti,S. and Maiti,S. (2008) Effect of loop length variation on quadruplex-Watson Crick duplex competition. Nucleic Acids Res., 33, 4433-4442.
    • (2008) Nucleic Acids Res. , vol.33 , pp. 4433-4442
    • Kumar, N.1    Sahoo, B.2    Varun, K.A.S.3    Maiti, S.4    Maiti, S.5
  • 21
    • 55249087006 scopus 로고    scopus 로고
    • A thermodynamic overview of naturally occurring intramolecular DNA quadruplexes
    • Kumar,N. and Maiti,S. (2008) A thermodynamic overview of naturally occurring intramolecular DNA quadruplexes. Nucleic Acids Res., 36, 5610-5622.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5610-5622
    • Kumar, N.1    Maiti, S.2
  • 22
    • 34248160921 scopus 로고    scopus 로고
    • Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions
    • Vorlickova,M., Bednarova,K., Kejnovska,I. and Kypr,J. (2007) Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions. Biopolymers, 86, 1-10.
    • (2007) Biopolymers , vol.86 , pp. 1-10
    • Vorlickova, M.1    Bednarova, K.2    Kejnovska, I.3    Kypr, J.4
  • 23
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor,C.R., Warshaw,M.M. and Shapiro,H. (1970) Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers, 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 24
    • 1542303744 scopus 로고    scopus 로고
    • Analysis of thermal melting curves
    • Mergny,J.L. and Lacroix,L. (2003) Analysis of thermal melting curves. Oligonucleotides, 13, 515-537
    • (2003) Oligonucleotides , vol.13 , pp. 515-537
    • Mergny, J.L.1    Lacroix, L.2
  • 26
    • 0032508468 scopus 로고    scopus 로고
    • Following G-quartet formation by UV-spectroscopy
    • Mergny,J.L., Phan,A.T. and Lacroix,L. (1998) Following G-quartet formation by UV-spectroscopy. FEBS Lett., 435, 74-78.
    • (1998) FEBS Lett. , vol.435 , pp. 74-78
    • Mergny, J.L.1    Phan, A.T.2    Lacroix, L.3
  • 27
    • 14844353406 scopus 로고    scopus 로고
    • The effect of chemical modifications on the thermal stability of different G-quadruplexes-forming oligonucleotides
    • Saccà,B., Lacroix,L. and Mergny,J.L. (2005) The effect of chemical modifications on the thermal stability of different G-quadruplexes-forming oligonucleotides. Nucleic Acids Res., 33, 1182-1192.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1182-1192
    • Saccà, B.1    Lacroix, L.2    Mergny, J.L.3
  • 28
    • 34547646128 scopus 로고    scopus 로고
    • Intramolecular DNA quadruplexes with different arrangements of short and long loops
    • Rachwal,P.A., Findlow,S., Werner,J.M., Brown,T. and Fox,K.R. (2007) Intramolecular DNA quadruplexes with different arrangements of short and long loops. Nucleic Acids Res., 35, 4214-4222.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 4214-4222
    • Rachwal, P.A.1    Findlow, S.2    Werner, J.M.3    Brown, T.4    Fox, K.R.5
  • 29
    • 34250682662 scopus 로고    scopus 로고
    • Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes
    • Gros,J., Rosu,F., Amrane,S., De Cian,A., Gabelica,V., Lacroix,L. and Mergny,J.L. (2007) Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes. Nucleic Acids Res., 35, 3064-3075.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3064-3075
    • Gros, J.1    Rosu, F.2    Amrane, S.3    De Cian, A.4    Gabelica, V.5    Lacroix, L.6    Mergny, J.L.7
  • 31
    • 0029100232 scopus 로고
    • Johnson,M. L. and Ackers,G. K. (eds), Academic Press Inc., San Diego, CA
    • Breslauer,K.J. (1995) In Johnson,M. L. and Ackers,G. K. (eds), Energetics of Biological Macromolecules. Vol. 259. Academic Press Inc., San Diego, CA, pp. 221-242.
    • (1995) Energetics of Biological Macromolecules , vol.259 , pp. 221-242
    • Breslauer, K.J.1
  • 32
    • 0033529318 scopus 로고    scopus 로고
    • A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques
    • Chalikian,T.V., Volker,J., Plum,G.E. and Breslauer,K.J. (1999) A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques. Proc. Natl Acad. Sci. USA, 96, 7853-7858.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 7853-7858
    • Chalikian, T.V.1    Volker, J.2    Plum, G.E.3    Breslauer, K.J.4
  • 33
    • 27144440078 scopus 로고    scopus 로고
    • Thermal difference spectra: a specific signature for nucleic acid structures
    • Mergny,J.L., Li,J., Lacroix,L., Amrane,S. and Chaires,J.B. (2005) Thermal difference spectra: a specific signature for nucleic acid structures. Nucleic Acids Res., 33, e138.
    • (2005) Nucleic Acids Res. , vol.33
    • Mergny, J.L.1    Li, J.2    Lacroix, L.3    Amrane, S.4    Chaires, J.B.5
  • 34
    • 33846023304 scopus 로고    scopus 로고
    • Oligo(dT) is not a correct native PAGE marker for single-stranded DNA
    • Kejnovska,I., Kypr,J. and Vorlickova,M. (2007) Oligo(dT) is not a correct native PAGE marker for single-stranded DNA. Biochem. Biophys. Res. Commun., 353, 776-779.
    • (2007) Biochem. Biophys. Res. Commun. , vol.353 , pp. 776-779
    • Kejnovska, I.1    Kypr, J.2    Vorlickova, M.3
  • 36
    • 33748765226 scopus 로고    scopus 로고
    • Length and pH-dependent energetics of (CCG)(n) and (CGG)(n) trinucleotide repeats
    • Amrane,S. and Mergny,J.L. (2006) Length and pH-dependent energetics of (CCG)(n) and (CGG)(n) trinucleotide repeats. Biochimie, 88, 1125-1134.
    • (2006) Biochimie , vol.88 , pp. 1125-1134
    • Amrane, S.1    Mergny, J.L.2
  • 37
    • 33845573247 scopus 로고    scopus 로고
    • Energetic aspects of locked nucleic acids quadruplex association and dissociation
    • Petraccone,L., Erra,E., Randazzo,A. and Giancola,C. (2006) Energetic aspects of locked nucleic acids quadruplex association and dissociation. Biopolymers, 83, 584-594.
    • (2006) Biopolymers , vol.83 , pp. 584-594
    • Petraccone, L.1    Erra, E.2    Randazzo, A.3    Giancola, C.4
  • 38
    • 39749116244 scopus 로고    scopus 로고
    • Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities
    • Gray,D.M., Wen,J.D., Gray,C.W., Repges,R., Repges,C., Raabe,G. and Fleischhauer,J. (2007) Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities. Chirality, 20, 431-440.
    • (2007) Chirality , vol.20 , pp. 431-440
    • Gray, D.M.1    Wen, J.D.2    Gray, C.W.3    Repges, R.4    Repges, C.5    Raabe, G.6    Fleischhauer, J.7
  • 39
    • 35448983988 scopus 로고    scopus 로고
    • Circular dichroism of quadruplex DNAs: applications to structure, cation effects and ligand binding
    • Paramasivan,S., Rujan,I. and Bolton,P.H. (2007) Circular dichroism of quadruplex DNAs: applications to structure, cation effects and ligand binding. Methods, 43, 324-331.
    • (2007) Methods , vol.43 , pp. 324-331
    • Paramasivan, S.1    Rujan, I.2    Bolton, P.H.3
  • 40
    • 47249089630 scopus 로고    scopus 로고
    • Polymorphism of human telomeric quadruplex structures
    • Dai,J., Carver,M. and Yang,D. (2008) Polymorphism of human telomeric quadruplex structures. Biochimie, 90, 1172-1183.
    • (2008) Biochimie , vol.90 , pp. 1172-1183
    • Dai, J.1    Carver, M.2    Yang, D.3
  • 41
    • 47649116805 scopus 로고    scopus 로고
    • Single molecule conformational analysis of DNA G-quadruplexes
    • Shirude,P.S. and Balasubramanian,S. (2008) Single molecule conformational analysis of DNA G-quadruplexes. Biochimie, 90, 1197-1206.
    • (2008) Biochimie , vol.90 , pp. 1197-1206
    • Shirude, P.S.1    Balasubramanian, S.2
  • 42
    • 47649109401 scopus 로고    scopus 로고
    • Quadruplex DNA crystal structures and drug design
    • Neidle,S. and Parkinson,G.N. (2008) Quadruplex DNA crystal structures and drug design. Biochimie, 90, 1184-1196.
    • (2008) Biochimie , vol.90 , pp. 1184-1196
    • Neidle, S.1    Parkinson, G.N.2
  • 43
    • 34047190331 scopus 로고    scopus 로고
    • Sequence effects of single base loops in intramolecular quadruplex DNA
    • Rachwal,P.A., Brown,T. and Fox,K.R. (2007) Sequence effects of single base loops in intramolecular quadruplex DNA. FEBS Lett., 581, 1657-1660.
    • (2007) FEBS Lett. , vol.581 , pp. 1657-1660
    • Rachwal, P.A.1    Brown, T.2    Fox, K.R.3
  • 44
    • 66349125451 scopus 로고    scopus 로고
    • Predicting, understanding the stability of G-quadruplexes
    • Stegle,O., Payet,L., Mergny,J.L. and Huppert,J. (2009) Predicting and understanding the stability of G-quadruplexes. Bioinformatics, 25, i374 i382.
    • (2009) Bioinformatics , vol.25
    • Stegle, O.1    Payet, L.2    Mergny, J.L.3    Huppert, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.