Transmembrane peptides used to investigate the homo-oligomeric interface and binding hotspot of latent membrane protein 1

Biopolymers

Volumn 95, Issue 11, 2011, Pages 772-784

  Sammond, Deanne W ^a   Joce, Catherine ^a   Takeshita, Ryan ^a   McQuate, Sarah E ^a   Ghosh, Nilanjan ^a   Martin, Jennifer M ^a   Yin, Hang ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

CD40; Epstein Barr virus; membrane proteins; NF kappa B; peptide chemical synthesis; protein protein interactions

Indexed keywords

CD40; EPSTEIN-BARR VIRUS; MEMBRANE PROTEINS; NF-KAPPA B; PROTEIN-PROTEIN INTERACTIONS;

ACTIVATION ANALYSIS; AMINO ACIDS; ASSOCIATION REACTIONS; CELL MEMBRANES; CYTOLOGY; OLIGOMERIZATION; OLIGOMERS; PEPTIDES; SIGNALING; SYNTHESIS (CHEMICAL); TRANSCRIPTION FACTORS; VIRUSES;

MEMBRANES;

ALANINE; ASPARTIC ACID; ASPARTIC ACID DERIVATIVE; BETA GALACTOSIDASE; FIFTH TRANSMEMBRANE HELIX; I KAPPA B KINASE BETA; LATENT MEMBRANE PROTEIN 1; LATENT MEMBRANE PROTEIN 1 D150A; ONCOPROTEIN; PEPTIDE; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL MEMBRANE; BINDING SITE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; ESCHERICHIA COLI; HUMAN; HUMAN CELL; HYDROPHOBICITY; IN VITRO STUDY; MICELLE; MUTATION; OLIGOMERIZATION; PLASMID; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STOICHIOMETRY; WESTERN BLOTTING;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; BIOPOLYMERS; BLOTTING, WESTERN; CIRCULAR DICHROISM; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MOLECULAR DYNAMICS SIMULATION; MOLECULAR SEQUENCE DATA; PEPTIDES; POINT MUTATION; SEQUENCE HOMOLOGY, AMINO ACID; SIGNAL TRANSDUCTION; ULTRACENTRIFUGATION; VIRAL MATRIX PROTEINS;

BACTERIA (MICROORGANISMS); HERPESVIRIDAE; HUMAN HERPESVIRUS 4;

EID: 80052264841     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.21672     Document Type: Article

References (65)

1. Henle, G.; Henle, W.; Diehl, V., Proc Natl Acad Sci USA 1968, 59, 94-101.
2. Niederman, J. C.; McCollum, R. W.; Henle, G.; Henle, W., JAMA 1968, 203, 205-209.
3. Brady, G.; MacArthur, G. J.; Farrell, P. J., J Clin Pathol 2007, 60, 1397-1402.
4. Flavell, K. J.; Murray, P. G., Mol Pathol 2000, 53, 262-269.
5. Thorley-Lawson, D. A., Nat Rev Immunol 2001, 1, 75-82.
6. Sugden, B., Cell 1989, 57, 5-7.
7. Sugden, B., Semin Virol 1994, 5, 197-205.
8. Kaye, K. M.; Izumi, K. M.; Kieff, E., Proc Natl Acad Sci USA 1993, 90, 9150-9154.
9. Young, L. S.; Rickinson, A. B., Nat Rev Cancer 2004, 4, 757-768.
10. Li, H. P.; Chang, Y. S., J Biomed Sci 2003, 10, 490-504.
11. Lam, N.; Sandberg, M. L.; Sugden, B., J Virol 2004, 78, 1657-1664.
12. Lam, N.; Sugden, B., Cell Signal 2003, 15, 9-16.
13. Bishop, G. A.; Hostager, B. S., Immunol Res 2001, 24, 97-109.
14. Bishop, G. A.; Hostager, B. S., Arch Immunol Ther Exp 2001, 49, 129-137.
15. Kaykas, A.; Worringer, K.; Sugden, B., EMBO J 2001, 20, 2641-2654.
16. Moorthy, R. K.; Thorley-Lawson, D. A., J Virol 1993, 67, 1638-1646.
17. Mitchell, T.; Sugden, B., J Virol 1995, 69, 2968-2976.
18. Kaykas, A.; Worringer, K.; Sugden, B., J Virol 2002, 76, 11551-11560.
19. Gires, O.; Zimber-Strobl, U.; Gonnella, R.; Ueffing, M.; Marschall, G.; Zeidler, R.; Pich, D.; Hammerschmidt, W., EMBO J 1997, 16, 6131-6140.
20. Coffin, W. F., III; Erickson, K. D.; Hoedt-Miller, M.; Martin, J. M., Oncogene 2001, 20, 5313-5330.
21. Coffin, W. F., III; Geiger, T. R.; Martin, J. M., J Virol 2003, 77, 3749-3758.
22. Kaykas, A.; Sugden, B., Oncogene 2000, 19, 1400-1410.
23. Liebowitz, D.; Mannick, J.; Takada, K.; Kieff, E., J Virol 1992, 66, 4612-4616.
24. Martin, J.; Sugden, B., J Virol 1991, 65, 3246-3258.
25. Wang, D.; Liebowitz, D.; Wang, F.; Gregory, C.; Rickinson, A.; Larson, R.; Springer, T.; Kieff, E., J Virol 1988, 62, 4173-4184.
26. Murray, J. K.; Gellman, S. H., Nat Protoc 2007, 2, 624-631.
27. Finger, C.; Volkmer, T.; Prodohl, A.; Otzen, D. E.; Engelman, D. M.; Schneider, D., J Mol Biol 2006, 358, 1221-1228.
28. Rath, A.; Glibowicka, M.; Nadeau, V. G.; Chen, G.; Deber, C. M., Proc Natl Acad Sci USA 2009, 106, 1760-1765.
29. Walkenhorst, W. F.; Merzlyakov, M.; Hristova, K.; Wimley, W. C., Biochim Biophys Acta 2009, 1788, 1321-1331.
30. Daugherty, D. L.; Gellman, S. H., J Am Chem 1999, 121, 4325-4333.
31. Lemmon, M. A.; Flanagan, J. M.; Treutlein, H. R.; Zhang, J.; Engelman, D. M., Biochemistry 1992, 31, 12719-12725.
32. Unterreitmeier, S.; Fuchs, A.; Schaffler, T.; Heym, R. G.; Frishman, D.; Langosch, D., J Mol Biol 2007, 374, 705-718.
33. Russ, W. P.; Engelman, D. M., J Mol Biol 2000, 296, 911-919.
34. Johnson, R. M.; Hecht, K.; Deber, C. M., Biochemistry 2007, 46, 9208-9214.
35. Ridder, A.; Skupjen, P.; Unterreitmeier, S.; Langosch, D., J Mol Biol 2005, 354, 894-902.
36. Gurezka, R.; Laage, R.; Brosig, B.; Langosch, D., J Biol Chem 1999, 274, 9265-9270.
37. Lee, J.; Sugden, B., J Virol 2007, 81, 9121-9130.
38. Gratkowski, H.; Lear, J. D.; DeGrado, W. F., Proc Natl Acad Sci USA 2001, 98, 880-885.
39. Choma, C.; Gratkowski, H.; Lear, J. D.; DeGrado, W. F., Nat Struct Biol 2000, 7, 161-166.
40. Zhou, F. X.; Merianos, H. J.; Brunger, A. T.; Engelman, D. M., Proc Natl Acad Sci USA 2001, 98, 2250-2255.
41. Stevens, T. J.; Arkin, I. T., Proteins 1999, 36, 135-143.
42. Eisenberg, D.; Schwarz, E.; Komaromy, M.; Wall, R., J Mol Biol 1984, 179, 125-142.
43. Langosch, D.; Brosig, B.; Kolmar, H.; Fritz, H. J., J Mol Biol 1996, 263, 525-530.
44. Russ, W. P.; Engelman, D. M., Proc Natl Acad Sci USA 1999, 96, 863-868.
45. Wiltscheck, R.; Kammerer, R. A.; Dames, S. A.; Schulthess, T.; Blommers, M. J.; Engel, J.; Alexandrescu, A. T., Protein Sci 1997, 6, 1734-1745.
46. Zscherp, C.; Schlesinger, R.; Tittor, J.; Oesterhelt, D.; Heberle, J., Proc Natl Acad Sci USA 1999, 96, 5498-5503.
47. McWhirter, S. M.; Pullen, S. S.; Holton, J. M.; Crute, J. J.; Kehry, M. R.; Alber, T., Proc Natl Acad Sci USA 1999, 96, 8408-8413.
48. Werneburg, B. G.; Zoog, S. J.; Dang, T. T.; Kehry, M. R.; Crute, J. J., J Biol Chem 2001, 276, 43334-43342.
49. Wu, S.; Xie, P.; Welsh, K.; Li, C.; Ni, C. Z.; Zhu, X.; Reed, J. C.; Satterthwait, A. C.; Bishop, G. A.; Ely, K. R., J Biol Chem 2005, 280, 33620-33626.
50. Yasui, T.; Luftig, M.; Soni, V.; Kieff, E., Proc Natl Acad Sci USA 2004, 101, 278-283.
51. Bloss, T.; Kaykas, A.; Sugden, B., J Gen Virol 1999, 80 (Pt 12), 3227-3232.
52. Kaiser, E.; Colescott, R. L.; Bossinger, C. D.; Cook, P. I., Anal Biochem 1970, 34, 595-598.
53. Sherman, W. R.; Robins, E., Anal Chem 1968, 40, 803-805.
54. Stouffer, A. L.; DeGrado, W. F.; Lear, J. D., Prog Coll and Polym Sci 2006, 131, 108-115.
55. Lindner, E.; Langosch, D., Proteins 2006, 65, 803-807.
56. Rohl, C. A.; Strauss, C. E.; Misura, K. M.; Baker, D., Methods Enzymol 2004, 383, 66-93.
57. Dantas, G.; Corrent, C.; Reichow, S. L.; Havranek, J. J.; Eletr, Z. M.; Isern, N. G.; Kuhlman, B.; Varani, G.; Merritt, E. A.; Baker, D., J Mol Biol 2007, 366, 1209-1221.
58. Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kale, L.; Schulten, K., J Comput Chem 2005, 26, 1781-1802.
59. MacKerell, A. D.; Bashford, D.; Bellott, M.; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiorkiewicz-Kuczera, J.; Yin, D.; Karplus, M., J Phys Chem B 1998, 102, 3586-3616.
60. Feller, S. E.; Yin, D. X.; Pastor, R. W.; MacKerell, A. D., Biophys J 1997, 73, 2269-2279.
61. Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L., J Chem Phys 1983, 79, 926-935.
62. Ryckaert, J. P.; Ciccotti, G.; Berendsen, H. J. C., J Comput Phys 1977, 23, 327-341.
63. Miyamoto, S.; Kollman, P. A., J Comput Chem 1992, 13, 952-962.
64. Darden, T.; York, D.; Pedersen, L., J Chem Phys 1993, 98, 10089-10092.
65. Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G., J Chem Phys 1995, 103, 8577-8593.