-
1
-
-
31944437577
-
A critical branching process model for biodiversity
-
DOI 10.1239/aap/1134587755
-
Aldous D, Popovic L. 2005. A critical branching process model for biodiversity. Adv Appl Probab. 37:1094-1115. (Pubitemid 43186362)
-
(2005)
Advances in Applied Probability
, vol.37
, Issue.4
, pp. 1094-1115
-
-
Aldous, D.1
Popovic, L.2
-
2
-
-
77953763244
-
Slowdowns in diversification rates from real phylogenies may not be real
-
Cusimano N, Renner SS. 2010. Slowdowns in diversification rates from real phylogenies may not be real. Syst Biol. 59:458-464.
-
(2010)
Syst Biol
, vol.59
, pp. 458-464
-
-
Cusimano, N.1
Renner, S.S.2
-
4
-
-
67749111625
-
A method for investigating relative timing information on phylogenetic trees
-
Ford D, Gernhard T, Matsen E. 2009. A method for investigating relative timing information on phylogenetic trees. Syst Biol 58:167.
-
(2009)
Syst Biol
, vol.58
, pp. 167
-
-
Ford, D.1
Gernhard, T.2
Matsen, E.3
-
5
-
-
48049107322
-
The conditioned reconstructed process
-
Gernhard T. 2008. The conditioned reconstructed process. J Theor Biol. 253:769-778.
-
(2008)
J Theor Biol
, vol.253
, pp. 769-778
-
-
Gernhard, T.1
-
6
-
-
0001032163
-
Evaluating the accuracy of sampling-based approaches to calculating posterior moments
-
Bernardo JM, Berger JO, Dawid AP, Smith AFM, editors New York (NY) Oxford University Press
-
Geweke J. 1992. Evaluating the accuracy of sampling-based approaches to calculating posterior moments. In: Bernardo JM, Berger JO, Dawid AP, Smith AFM, editors. Bayesian Statistics 4. New York (NY): Oxford University Press. p. 169-193.
-
(1992)
Bayesian Statistics
, vol.4
, pp. 169-193
-
-
Geweke, J.1
-
8
-
-
77956890234
-
Monte carlo sampling methods using Markov chains and their applications
-
Hastings WK. 1970. Monte carlo sampling methods using Markov chains and their applications. Biometrika 57:97-109.
-
(1970)
Biometrika
, vol.57
, pp. 97-109
-
-
Hastings, W.K.1
-
9
-
-
0002024701
-
On the generalized "birth-and-death" process
-
Kendall DG. 1948. On the generalized "birth-and-death" process. Ann Math Stat. 19:1-15.
-
(1948)
Ann Math Stat
, vol.19
, pp. 1-15
-
-
Kendall, D.G.1
-
10
-
-
0001697963
-
Stochastic processes and population growth
-
Kendall DG. 1949. Stochastic processes and population growth. J R Stat Soc Ser B. 11:230-264.
-
(1949)
J R Stat Soc ser B
, vol.11
, pp. 230-264
-
-
Kendall, D.G.1
-
11
-
-
33644826560
-
Computing Bayes factors using thermo-dynamic integration
-
Lartillot N, Philippe H. 2006. Computing Bayes factors using thermo-dynamic integration. Syst Biol. 55:195.
-
(2006)
Syst Biol
, vol.55
, pp. 195
-
-
Lartillot, N.1
Philippe, H.2
-
12
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis N, Rosenbluth A, Rosenbluth M, Teller A, Teller E. 1953. Equation of state calculations by fast computing machines. J Chem Phys. 21:1087-1092.
-
(1953)
J Chem Phys
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.2
Rosenbluth, M.3
Teller, A.4
Teller, E.5
-
16
-
-
0000238336
-
A simplex method for function minimization
-
Nelder J, Mead R. 1965. A simplex method for function minimization. Comput J. 7(4):308.
-
(1965)
Comput J
, vol.7
, Issue.4
, pp. 308
-
-
Nelder, J.1
Mead, R.2
-
18
-
-
41749120055
-
Density-dependent cladogenesis in birds
-
Phillimore AB, Price TD. 2008. Density-dependent cladogenesis in birds. PLoS Biol. 6:e71.
-
(2008)
PLoS Biol
, vol.6
-
-
Phillimore, A.B.1
Price, T.D.2
-
19
-
-
41149087694
-
CODA: Convergence diagnosis and output analysis for MCMC
-
Plummer M, Best N, Cowles K, Vines K. 2006. CODA: convergence diagnosis and output analysis for MCMC. R News 6:7-11.
-
(2006)
R News
, vol.6
, pp. 7-11
-
-
Plummer, M.1
Best, N.2
Cowles, K.3
Vines, K.4
-
20
-
-
58549114903
-
Phylogenetic approaches to the study of extinction
-
Purvis A. 2008. Phylogenetic approaches to the study of extinction. Annu Rev. Ecol Evol Syst. 39:301-319.
-
(2008)
Annu Rev. Ecol Evol Syst
, vol.39
, pp. 301-319
-
-
Purvis, A.1
-
21
-
-
0034703844
-
Testing macro-evolutionary models using incomplete molecular phylogenies
-
Pybus OG, Harvey PH. 2000. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc R Soc Lond. 267:2267-2272.
-
(2000)
Proc R Soc Lond
, vol.267
, pp. 2267-2272
-
-
Pybus, O.G.1
Harvey, P.H.2
-
22
-
-
77954661368
-
Diversity dynamics: Molecular phyloge-nies need the fossil record
-
Quental T, Marshall C. 2010. Diversity dynamics: molecular phyloge-nies need the fossil record. Trends Ecol Evol. 25:434-441.
-
(2010)
Trends Ecol Evol
, vol.25
, pp. 434-441
-
-
Quental, T.1
Marshall, C.2
-
23
-
-
84863304598
-
R a language and environment for statistical computing
-
R Development Core Team ISBN: 3-900051-07-0
-
R Development Core Team. 2009. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing. ISBN: 3-900051-07-0.
-
(2009)
Vienna (Austria): R Foundation for Statistical Computing
-
-
-
24
-
-
77953910538
-
Extinction rates should not be estimated from molecular phylogenies
-
Rabosky DL. 2010. Extinction rates should not be estimated from molecular phylogenies. Evolution. 64:1816-1824.
-
(2010)
Evolution
, vol.64
, pp. 1816-1824
-
-
Rabosky, D.L.1
-
25
-
-
47749105699
-
Explosive evolutionary radiations: Decreasing speciation or increasing extinction through time?
-
DOI 10.1111/j.1558-5646.2008.00409.x
-
Rabosky D, Lovette I. 2008. Explosive evolutionary radiations: decreasing speciation or increasing extinction through time? Evolution 62:1866-1875. (Pubitemid 352033248)
-
(2008)
Evolution
, vol.62
, Issue.8
, pp. 1866-1875
-
-
Rabosky, D.L.1
Lovette, I.J.2
-
26
-
-
77955300661
-
-
Accessed September 3, 2010
-
Rambaut A, Drummond A. 2009. Tracer v1.5. Available from: http://tree.bio.ed.ac.uk/software/tracer/(Accessed September 3, 2010).
-
(2009)
Tracer v1.5.
-
-
Rambaut, A.1
Drummond, A.2
-
27
-
-
0029818407
-
Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
-
Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol. 43:304-311. (Pubitemid 26315133)
-
(1996)
Journal of Molecular Evolution
, vol.43
, Issue.3
, pp. 304-311
-
-
Rannala, B.1
Yang, Z.2
-
28
-
-
36249028141
-
Estimating diversification rates from phylogenetic information
-
DOI 10.1016/j.tree.2007.06.013, PII S0169534707002698
-
Ricklefs R. 2007. Estimating diversification rates from phylogenetic information. Trends Ecol Evol. 22:601-610. (Pubitemid 350122785)
-
(2007)
Trends in Ecology and Evolution
, vol.22
, Issue.11
, pp. 601-610
-
-
Ricklefs, R.E.1
-
29
-
-
70349478622
-
On incomplete sampling under birth-death models and connections to the sampling-based coalescent
-
Stadler T. 2009. On incomplete sampling under birth-death models and connections to the sampling-based coalescent. J Theor Biol. 261:58-66.
-
(2009)
J Theor Biol
, vol.261
, pp. 58-66
-
-
Stadler, T.1
-
30
-
-
77958152206
-
Sampling-through-time in birth-death trees
-
Stadler T. 2010a. Sampling-through-time in birth-death trees. J Theor Biol. 267:396-404.
-
(2010)
J Theor Biol
, vol.267
, pp. 396-404
-
-
Stadler, T.1
-
32
-
-
33746419713
-
Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data
-
Tanaka M, Francis A, Luciani F, Sisson S. 2006. Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data. Genetics 173:1511.
-
(2006)
Genetics
, vol.173
, pp. 1511
-
-
Tanaka, M.1
Francis, A.2
Luciani, F.3
Sisson, S.4
-
34
-
-
40749148589
-
Complex speciation of humans and chimpanzees
-
DOI 10.1038/nature06805, PII NATURE06805
-
Wakeley J. 2008. Complex speciation of humans and chimpanzees. Nature 452:E3-E4. (Pubitemid 351380253)
-
(2008)
Nature
, vol.452
, Issue.7184
-
-
Wakeley, J.1
-
35
-
-
0030749810
-
Bayesian phylogenetic inference using DNA sequences: A Markov Chain Monte Carlo method
-
Yang Z, Rannala B. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol Biol Evol. 17:717-724. (Pubitemid 27287292)
-
(1997)
Molecular Biology and Evolution
, vol.14
, Issue.7
, pp. 717-724
-
-
Yang, Z.1
Rannala, B.2
|