Genetic characterization of K13965, a strain of Oak Vale virus from Western Australia

Virus Research

Volumn 160, Issue 1-2, 2011, Pages 206-213

  Quan, Phenix Lan ^a   Williams, David T ^b   Johansen, Cheryl A ^c   Jain, Komal ^a   Petrosov, Alexandra ^a   Diviney, Sinead M ^b   Tashmukhamedova, Alla ^a   Hutchison, Stephen K ^d   Tesh, Robert B ^e   Mackenzie, John S ^b,f   Briese, Thomas ^a,g   Lipkin, W Ian ^a,g,h  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b CURTIN UNIVERSITY   (Australia)

^c UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^d University of Texas Medical Branch ^*  (United States)

^e University of Texas Medical Branch School of Medicine   (United States)

^f BURNET INSTITUTE   (Australia)

^g NONE   (United States)

^h NONE   (United States)

Author keywords

Anopheles annulipes; Australia; Culex edwardsi; Molecular characterization; Oak Vale virus; Rhabdovirus; Virus phylogenetics

Indexed keywords

ANOPHELES; ARTICLE; AUSTRALIA; CLADISTICS; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OAK VALE VIRUS; PHYLOGENY; PRIORITY JOURNAL; RHABDOVIRUS; SEQUENCE ANALYSIS; VIRAL GENETICS; VIRUS CLASSIFICATION; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN;

ANNULIPES SPECIES COMPLEX; OAK-VALE VIRUS; RHABDOVIRIDAE; TUPAIA;

EID: 80052138066     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2011.06.021     Document Type: Article

References (70)

1. Allison A.B., Palacios G., Travassos da Rosa A., Popov V.L., Lu L., Xiao S.Y., Detoy K., Briese T., Lipkin W.I., Keel M.K., Stallknecht D.E., Bishop G.R., Tesh R.B. Characterization of Durham virus, a novel rhabdovirus that encodes both a C and SH protein. Virus Res. 2010, 155(1):112-122.
2. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215(3):403-410.
3. Bellini W.J., Englund G., Rozenblatt S., Arnheiter H., Richardson C.D. Measles virus P gene codes for two proteins. J. Virol. 1985, 53(3):908-919.
4. Bourhy H., Cowley J.A., Larrous F., Holmes E.C., Walker P.J. Phylogenetic relationships among rhabdoviruses inferred using the L polymerase gene. J. Gen. Virol. 2005, 86(Pt 10):2849-2858.
5. Bourhy H., Gubala A.J., Weir R.P., Boyle D.B. Animal rhabdoviruses. Encyclopedia of Virology 2008, 111-121. 3rd edn. B.W.J.V.R. Mahy, M.H.V. Van Regenmortel (Eds.).
6. Broom A.K., Hall R.A., Johansen C.A., Oliveira N., Howard M.A., Lindsay M.D., Kay B.H., Mackenzie J.S. Identification of Australian arboviruses in inoculated cell cultures using monoclonal antibodies in ELISA. Pathology 1998, 30(3):286-288.
7. Broom A.K., Lindsay M., van Heuzen B., Wright T., Mackenzie J., Smith D. Contrasting patterns of flavivirus activity in the Kimberley region of Western Australia, 1992-1996. Arbovirus Res. Aust. 1997, (7):25-30.
8. Broom A.K., Lindsay M.D., Harrington S.A., Smith D.W. Investigation of the southern limits of Murray Valley encephalitis activity in Western Australia during the 2000 wet season. Vector Borne Zoonotic Dis. 2002, 2(2):87-95.
9. Broom A.K., Lindsay M.D., Wright A.E., Smith D.W., Mackenzie J.S. Epizootic activity of Murray Valley encephalitis and Kunjin viruses in an aboriginal community in the southeast Kimberley region of Western Australia: results of mosquito fauna and virus isolation studies. Am. J. Trop. Med. Hyg. 2003, 69(3):277-283.
10. Calisher C.H., Karabatsos N., Zeller H., Digoutte J.P., Tesh R.B., Shope R.E., Travassos da Rosa A.P., St George T.D. Antigenic relationships among rhabdoviruses from vertebrates and hematophagous arthropods. Intervirology 1989, 30(5):241-257.
11. Coll J.M. The glycoprotein G of rhabdoviruses. Arch. Virol. 1995, 140(5):827-851.
12. Crysler J.G., Lee P., Reinders M., Prevec L. The sequence of the nucleocapsid protein (N) gene of Piry virus: possible domains in the N protein of vesiculoviruses. J. Gen. Virol. 1990, 71(Pt 9):2191-2194.
13. Curran J., Kolakofsky D. Nonsegmented negative-strand RNA virus RNA synthesis in vivo. Virology 2008, 371(2):227-230.
14. Cybinski D.H., Muller M.J. Isolation of arboviruses from cattlee and insects at two sentinel sites in Queensland, Australia, 1979-85. Aust. J. Zool. 1990, 38:25-32.
15. Dacheux L., Berthet N., Dissard G., Holmes E.C., Delmas O., Larrous F., Guigon G., Dickinson P., Faye O., Sall A.A., Old I.G., Kong K., Kennedy G.C., Manuguerra J.C., Cole S.T., Caro V., Gessain A., Bourhy H. Application of broad-spectrum resequencing microarray for genotyping rhabdoviruses. J. Virol. 2010, 84(18):9557-9574.
16. Dietzgen R.G., Callaghan B., Wetzel T., Dale J.L. Completion of the genome sequence of Lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Res. 2006, 118(1-2):16-22.
17. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32(5):1792-1797.
18. Elango N., Kovamees J., Varsanyi T.M., Norrby E. mRNA sequence and deduced amino acid sequence of the mumps virus small hydrophobic protein gene. J. Virol. 1989, 63(3):1413-1415.
19. Gubala A., Davis S., Weir R., Melville L., Cowled C., Walker P., Boyle D. Ngaingan virus, a macropod-associated rhabdovirus, contains a second glycoprotein gene and seven novel open reading frames. Virology 2010, 399(1):98-108.
20. Gubala A.J., Proll D.F., Barnard R.T., Cowled C.J., Crameri S.G., Hyatt A.D., Boyle D.B. Genomic characterisation of Wongabel virus reveals novel genes within the Rhabdoviridae. Virology 2008, 376(1):13-23.
21. Huang Y., Zhao H., Luo Z., Chen X., Fang R.X. Novel structure of the genome of Rice yellow stunt virus: identification of the gene 6-encoded virion protein. J. Gen. Virol. 2003, 84(Pt 8):2259-2264.
22. Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17(8):754-755.
23. Jansen C.C., Webb C.E., Graham G.C., Craig S.B., Zborowski P., Ritchie S.A., Russell R.C., van den Hurk A.F. Blood sources of mosquitoes collected from urban and peri-urban environments in Eastern Australia with species-specific molecular analysis of avian blood meals. Am. J. Trop. Med. Hyg. 2009, 81(5):849-857.
24. Jayakar H.R., Whitt M.A. Identification of two additional translation products from the matrix (M) gene that contribute to vesicular stomatitis virus cytopathology. J. Virol. 2002, 76(16):8011-8018.
25. Johansen C., Broom A., Lindsay M., Avery V., Power S., Dixon G., Sturrock K., Maley F., McFall S., Geerlings K., Zammit C., Masters L., Bestall A., Smith D. Arbovirus and vector surveillance in Western Australia, 2004/05 to 2007/08. Arbovirus Res. Aust. 2009, 10:76-81.
26. Johansen C.A., Power S.L., Broom A.K. Determination of mosquito (Diptera: Culicidae) bloodmeal sources in Western Australia: implications for arbovirus transmission. J. Med. Entomol. 2009, 46(5):1167-1175.
27. Johansen C.A., van den Hurk A.F., Ritchie S.A., Zborowski P., Nisbet D.J., Paru R., Bockarie M.J., Macdonald J., Drew A.C., Khromykh T.I., Mackenzie J.S. Isolation of Japanese encephalitis virus from mosquitoes (Diptera: Culicidae) collected in the Western Province of Papua New Guinea, 1997-1998. Am. J. Trop. Med. Hyg. 2000, 62(5):631-638.
28. Kretzschmar E., Peluso R., Schnell M.J., Whitt M.A., Rose J.K. Normal replication of vesicular stomatitis virus without C proteins. Virology 1996, 216(2):309-316.
29. Kuzmin I.V., Hughes G.J., Rupprecht C.E. Phylogenetic relationships of seven previously unclassified viruses within the family Rhabdoviridae using partial nucleoprotein gene sequences. J. Gen. Virol. 2006, 87(Pt 8):2323-2331.
30. Kuzmin I.V., Novella I.S., Dietzgen R.G., Padhi A., Rupprecht C.E. The rhabdoviruses: biodiversity, phylogenetics, and evolution. Infect. Genet. Evol. 2009, 9(4):541-553.
31. Lee D.J., Hicks M.M., Debenham M.L., Griffiths M., Marks E.N., Bryan J.H., Russell R.C. The Culicidae of the Australasian Region, Entomology Monograph No. 2 1989, vol. 7. Australian Government Publishing Service, Canberra, Australia.
32. Lee D.J., Hicks M.M., Griffiths M., Debenham M.L., Bryan J.H., Russell R.C., Geary M. The Culicidae of the Australasian Region, Entomology Monograph No. 2 1987, vol. 7. Australian Government Publishing Service, Canberra, Australia.
33. Lee D.J., Hicks M.M., Griffiths M., Russell R.C., Marks E.N. The Culicidae of the Australasian Region, Entomology Monograph No. 2 1984, vol. 7. Australian Government Publishing Service, Canberra, Australia.
34. Li Z., Xu J., Patel J., Fuentes S., Lin Y., Anderson D., Sakamoto K., Wang L.F., He B. Function of the small hydrophobic protein of J paramyxovirus. J. Virol. 2011, 85(1):32-42.
35. Liehne P.F., Anderson S., Stanley N.F., Liehne C.G., Wright A.E., Chan K.H., Leivers S., Britten D.K., Hamilton N.P. Isolation of Murray Valley encephalitis virus and other arboviruses in the Ord River Valley 1972-1976. Aust. J. Exp. Biol. Med. Sci. 1981, 59(Pt 3):347-356.
36. Liehne P.F., Stanley N.F., Alpers M.P., Liehne C.G. Ord River arboviruses-the study site and mosquitoes. Aust. J. Exp. Biol. Med. Sci. 1976, 54(5):487-497.
37. Lindsay M.D., Broom A.K., Wright A.E., Johansen C.A., Mackenzie J.S. Ross River virus isolations from mosquitoes in arid regions of Western Australia: implication of vertical transmission as a means of persistence of the virus. Am. J. Trop. Med. Hyg. 1993, 49(6):686-696.
38. Longdon B., Obbard D.J., Jiggins F.M. Sigma viruses from three species of Drosophila form a major new clade in the rhabdovirus phylogeny. Proc. Biol. Sci. 2010, 277(1678):35-44.
39. Mackenzie J.S., Broom A.K. Ord river irrigation area: the effect of dam construction and irrigation on the incidence of Murray Valley encephalitis virus. Water Resources-Health, Environment and Development 1999, 108-122. Spon, London. B.H. Kay (Ed.).
40. Margulies M., Egholm M., Altman W.E., Attiya S., Bader J.S., Bemben L.A., Berka J., Braverman M.S., Chen Y.J., Chen Z., Dewell S.B., Du L., Fierro J.M., Gomes X.V., Godwin B.C., He W., Helgesen S., Ho C.H., Irzyk G.P., Jando S.C., Alenquer M.L., Jarvie T.P., Jirage K.B., Kim J.B., Knight J.R., Lanza J.R., Leamon J.H., Lefkowitz S.M., Lei M., Li J., Lohman K.L., Lu H., Makhijani V.B., McDade K.E., McKenna M.P., Myers E.W., Nickerson E., Nobile J.R., Plant R., Puc B.P., Ronan M.T., Roth G.T., Sarkis G.J., Simons J.F., Simpson J.W., Srinivasan M., Tartaro K.R., Tomasz A., Vogt K.A., Volkmer G.A., Wang S.H., Wang Y., Weiner M.P., Yu P., Begley R.F., Rothberg J.M. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437(7057):376-380.
41. McWilliam S.M., Kongsuwan K., Cowley J.A., Byrne K.A., Walker P.J. Genome organization and transcription strategy in the complex GNS-L intergenic region of bovine ephemeral fever rhabdovirus. J. Gen. Virol. 1997, 78(6):1309-1317.
42. Morzunov S.P., Winton J.R., Nichol S.T. The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus. Virus Res. 1995, 38(2-3):175-192.
43. Muller M.J., Standfast H.A. Vectors of ephemeral fever group viruses. Arbovirus Research in Australia: Proceedings of the Fourth Symposium 1986, 295-300. T.D. St George, B.H. Kay, J. Blok (Eds.).
44. Nagai Y., Kato A. Accessory genes of the paramyxoviridae, a large family of nonsegmented negative-strand RNA viruses, as a focus of active investigation by reverse genetics. Curr. Top. Microbiol. Immunol. 2004, 283:197-248.
45. Nishizawa T., Kurath G., Winton J.R. Sequence analysis and expression of the M1 and M2 matrix protein genes of hirame rhabdovirus (HIRRV). Dis. Aquat. Organ. 1997, 31:9-17.
46. Peluso R.W., Richardson J.C., Talon J., Lock M. Identification of a set of proteins (C' and C) encoded by the bicistronic P gene of the Indiana serotype of vesicular stomatitis virus and analysis of their effect on transcription by the viral RNA polymerase. Virology 1996, 218(2):335-342.
47. Poch O., Blumberg B.M., Bougueleret L., Tordo N. Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. J. Gen. Virol. 1990, 71(Pt 5):1153-1162.
48. Poch O., Sauvaget I., Delarue M., Tordo N. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. Embo J. 1989, 8(12):3867-3874.
49. Quan P.L., Junglen S., Tashmukhamedova A., Conlan S., Hutchison S.K., Kurth A., Ellerbrok H., Egholm M., Briese T., Leendertz F.H., Lipkin W.I. Moussa virus: a new member of the Rhabdoviridae family isolated from Culex decens mosquitoes in Cote d'Ivoire. Virus Res. 2010, 147(1):17-24.
50. Quan P.L., Palacios G., Jabado O.J., Conlan S., Hirschberg D.L., Pozo F., Jack P.J., Cisterna D., Renwick N., Hui J., Drysdale A., Amos-Ritchie R., Baumeister E., Savy V., Lager K.M., Richt J.A., Boyle D.B., Garcia-Sastre A., Casas I., Perez-Brena P., Briese T., Lipkin W.I. Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray. J. Clin. Microbiol. 2007, 45(8):2359-2364.
51. Reed S.E., Tsai C.W., Willie K.J., Redinbaugh M.G., Hogenhout S.A. Shotgun sequencing of the negative-sense RNA genome of the rhabdovirus Maize mosaic virus. J. Virol. Methods 2005, 129(1):91-96.
52. Revill P., Trinh X., Dale J., Harding R. Taro vein chlorosis virus: characterization and variability of a new nucleorhabdovirus. J. Gen. Virol. 2005, 86(Pt 2):491-499.
53. Rice P., Longden I., Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000, 16(6):276-277.
54. Scholthof K.B., Hillman B.I., Modrell B., Heaton L.A., Jackson A.O. Characterization and detection of sc4: a sixth gene encoded by sonchus yellow net virus. Virology 1994, 204(1):279-288.
55. Schutze H., Mundt E., Mettenleiter T.C. Complete genomic sequence of viral hemorrhagic septicemia virus, a fish rhabdovirus. Virus Genes 1999, 19(1):59-65.
56. Spiropoulou C.F., Nichol S.T. A small highly basic protein is encoded in overlapping frame within the P gene of vesicular stomatitis virus. J. Virol. 1993, 67(6):3103-3110.
57. Springfeld C., Darai G., Cattaneo R. Characterization of the Tupaia rhabdovirus genome reveals a long open reading frame overlapping with P and a novel gene encoding a small hydrophobic protein. J. Virol. 2005, 79(11):6781-6790.
58. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24(8):1596-1599.
59. Tanno F., Nakatsu A., Toriyama S., Kojima M. Complete nucleotide sequence of Northern cereal mosaic virus and its genome organization. Arch. Virol. 2000, 145(7):1373-1384.
60. Tao J.J., Zhou G.Z., Gui J.F., Zhang Q.Y. Genomic sequence of mandarin fish rhabdovirus with an unusual small non-transcriptional ORF. Virus Res. 2008, 132(1-2):86-96.
61. Teninges D., Bras F., Dezelee S. Genome organization of the sigma rhabdovirus: six genes and a gene overlap. Virology 1993, 193(2):1018-1023.
62. Tordo N., Benmansour A., Calisher C., Dietzgen R.G., Fang R.X., Jackson A.O., Kurath G., Nadin-Davis S., Tesh R.B., Walker P.J. Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses 2005, 623-644.
63. Tordo N., Poch O., Ermine A., Keith G., Rougeon F. Walking along the rabies genome: is the large G-L intergenic region a remnant gene?. Proc. Natl. Acad. Sci. U.S.A. 1986, 83(11):3914-3918.
64. Walker P.J., Kongsuwan K. Deduced structural model for animal rhabdovirus glycoproteins. J. Gen. Virol. 1999, 80(Pt 5):1211-1220.
65. Wang Y., McWilliam S.M., Cowley J.A., Walker P.J. Complex genome organization in the GNS-L intergenic region of Adelaide River rhabdovirus. Virology 1994, 203(1):63-72.
66. Weir R.P., Hyatt A.D., Calisher C.H., Whelan P.I. New records of arboviruses isolated from mosquitoes in the Northern Territory, 1982-1992. Arbovirus Res. Aust. 1997, 7:311-321.
67. Whelan S., Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 2001, 18(5):691-699.
68. Whelan S.P., Barr J.N., Wertz G.W. Transcription and replication of nonsegmented negative-strand RNA viruses. Curr. Top. Microbiol. Immunol. 2004, 283:61-119.
69. Wilson R.L., Fuentes S.M., Wang P., Taddeo E.C., Klatt A., Henderson A.J., He B. Function of small hydrophobic proteins of paramyxovirus. J. Virol. 2006, 80(4):1700-1709.
70. Zhu R.L., Lei X.Y., Ke F., Yuan X.P., Zhang Q.Y. Genome of turbot rhabdovirus exhibits unusual non-coding regions and an additional ORF that could be expressed in fish cell. Virus Res. 2011, 155(2):495-505.