-
1
-
-
51349107479
-
Fifty years of coiled-coils and alpha-helical bundles: a close relationship between sequence and structure
-
Parry DA, Fraser RD, Squire JM, (2008) Fifty years of coiled-coils and alpha-helical bundles: a close relationship between sequence and structure. J Struct Biol 163: 258-269.
-
(2008)
J Struct Biol
, vol.163
, pp. 258-269
-
-
Parry, D.A.1
Fraser, R.D.2
Squire, J.M.3
-
2
-
-
0033538551
-
Disruption of coiled-coil domains in Fer protein-tyrosine kinase abolishes trimerization but not kinase activation
-
Craig AW, Zirngibl R, Greer P, (1999) Disruption of coiled-coil domains in Fer protein-tyrosine kinase abolishes trimerization but not kinase activation. J Biol Chem 274: 19934-19942.
-
(1999)
J Biol Chem
, vol.274
, pp. 19934-19942
-
-
Craig, A.W.1
Zirngibl, R.2
Greer, P.3
-
3
-
-
0027382276
-
A spacer protein in the Saccharomyces cerevisiae spindle poly body whose transcript is cell cycle-regulated
-
Kilmartin JV, Dyos SL, Kershaw D, Finch JT, (1993) A spacer protein in the Saccharomyces cerevisiae spindle poly body whose transcript is cell cycle-regulated. J Cell Biol 123: 1175-1184.
-
(1993)
J Cell Biol
, vol.123
, pp. 1175-1184
-
-
Kilmartin, J.V.1
Dyos, S.L.2
Kershaw, D.3
Finch, J.T.4
-
4
-
-
4344685822
-
Scaffolds, levers, rods and springs: diverse cellular functions of long coiledcoil proteins
-
Rose A, Meier I, (2004) Scaffolds, levers, rods and springs: diverse cellular functions of long coiledcoil proteins. Cell Mol Life Sci 61: 1996-2009.
-
(2004)
Cell Mol Life Sci
, vol.61
, pp. 1996-2009
-
-
Rose, A.1
Meier, I.2
-
5
-
-
33747788700
-
Comparative analysis of coiled-coil prediction methods
-
Gruber M, Soding J, Lupas AN, (2006) Comparative analysis of coiled-coil prediction methods. J Struct Biol 155: 140-145.
-
(2006)
J Struct Biol
, vol.155
, pp. 140-145
-
-
Gruber, M.1
Soding, J.2
Lupas, A.N.3
-
6
-
-
47349124555
-
Predicting helix orientation for coiled-coil dimers
-
Apgar JR, Gutwin KN, Keating AE, (2008) Predicting helix orientation for coiled-coil dimers. Proteins 72: 1048-1065.
-
(2008)
Proteins
, vol.72
, pp. 1048-1065
-
-
Apgar, J.R.1
Gutwin, K.N.2
Keating, A.E.3
-
7
-
-
0030987407
-
MultiCoil: a program for predicting two- and three-stranded coiled coils
-
Wolf E, Kim PS, Berger B, (1997) MultiCoil: a program for predicting two- and three-stranded coiled coils. Protein Sci 6: 1179-1189.
-
(1997)
Protein Sci
, vol.6
, pp. 1179-1189
-
-
Wolf, E.1
Kim, P.S.2
Berger, B.3
-
8
-
-
0029145638
-
Predicting coiled coils by use of pairwise residue correlations
-
Berger B, Wilson DB, Wolf E, Tonchev T, Milla M, et al. (1995) Predicting coiled coils by use of pairwise residue correlations. Proc Natl Acad Sci USA 92: 8259-8263.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8259-8263
-
-
Berger, B.1
Wilson, D.B.2
Wolf, E.3
Tonchev, T.4
Milla, M.5
-
9
-
-
32144456009
-
Paircoil2: improved prediction of coiled coils from sequence
-
McDonnell AV, Jiang T, Keating AE, Berger B, (2006) Paircoil2: improved prediction of coiled coils from sequence. Bioinformatics 22: 356-358.
-
(2006)
Bioinformatics
, vol.22
, pp. 356-358
-
-
McDonnell, A.V.1
Jiang, T.2
Keating, A.E.3
Berger, B.4
-
10
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A, Van Dyke M, Stock J, (1991) Predicting coiled coils from protein sequences. Science 252: 1162-1164.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
van Dyke, M.2
Stock, J.3
-
11
-
-
77957750326
-
The evolution and structure prediction of coiled coils across all genomes
-
Rackham OJ, Madera M, Armstrong CT, Vincent TL, Woolfson DN, et al. (2010) The evolution and structure prediction of coiled coils across all genomes. Journal of Molecular Biology 403: 480-493.
-
(2010)
Journal of Molecular Biology
, vol.403
, pp. 480-493
-
-
Rackham, O.J.1
Madera, M.2
Armstrong, C.T.3
Vincent, T.L.4
Woolfson, D.N.5
-
12
-
-
0035999986
-
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
-
Delorenzi M, Speed T, (2002) An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Bioinformatics 18: 617-625.
-
(2002)
Bioinformatics
, vol.18
, pp. 617-625
-
-
Delorenzi, M.1
Speed, T.2
-
13
-
-
70350683807
-
CCHMM PROF: a HMM-based coiled-coil predictor with evolutionary information
-
Bartoli L, Fariselli P, Krogh A, Casadio R, (2009) CCHMM PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinformatics 25: 2757-2763.
-
(2009)
Bioinformatics
, vol.25
, pp. 2757-2763
-
-
Bartoli, L.1
Fariselli, P.2
Krogh, A.3
Casadio, R.4
-
14
-
-
58149185141
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW, (2009) GenBank. Nucleic Acids Res 37: 26-31.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 26-31
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
15
-
-
0035853291
-
Socket: a program for identifying and analysing coiled-coil motifs within protein structures
-
Walshaw J, Woolfson DN, (2001) Socket: a program for identifying and analysing coiled-coil motifs within protein structures. J Mol Biol 307: 1427-1450.
-
(2001)
J Mol Biol
, vol.307
, pp. 1427-1450
-
-
Walshaw, J.1
Woolfson, D.N.2
-
17
-
-
0030792253
-
SCOP: a structural classification of proteins database
-
Hubbard TJ, Murzin AG, Brenner SE, Chothia C, (1997) SCOP: a structural classification of proteins database. Nucleic acids research 25: 236-239.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 236-239
-
-
Hubbard, T.J.1
Murzin, A.G.2
Brenner, S.E.3
Chothia, C.4
-
18
-
-
33845293800
-
Energetic determinants of oligomeric state specificity in coiled coils
-
Ramos J, Lazaridis T, (2006) Energetic determinants of oligomeric state specificity in coiled coils. J Am Chem Soc 128: 15499-15510.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 15499-15510
-
-
Ramos, J.1
Lazaridis, T.2
-
19
-
-
0037124036
-
NEMO trimerizes through its coiled-coil C-terminal domain
-
Agou F, Ye F, Goffnont S, Courtois G, Yamaoka S, et al. (2002) NEMO trimerizes through its coiled-coil C-terminal domain. J Biol Chem 277: 17464-17475.
-
(2002)
J Biol Chem
, vol.277
, pp. 17464-17475
-
-
Agou, F.1
Ye, F.2
Goffnont, S.3
Courtois, G.4
Yamaoka, S.5
-
20
-
-
42349084254
-
Divergence of quaternary structures among bacterial agellar filaments
-
Galkin VE, Yu X, Bielnicki J, Heuser J, Ewing CP, et al. (2008) Divergence of quaternary structures among bacterial agellar filaments. Science 320: 382-385.
-
(2008)
Science
, vol.320
, pp. 382-385
-
-
Galkin, V.E.1
Yu, X.2
Bielnicki, J.3
Heuser, J.4
Ewing, C.P.5
-
21
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
Harbury PB, Zhang T, Kim PS, Alber T, (1993) A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science 262: 1401-1407.
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
23
-
-
0032169688
-
PQS: a protein quaternary structure file server
-
Henrick K, Thornton JM, (1998) PQS: a protein quaternary structure file server. Trends Biochem Sci 23: 358-361.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 358-361
-
-
Henrick, K.1
Thornton, J.M.2
-
24
-
-
0035807883
-
Analysis of mitotic microtubule-associated proteins using mass spectrometry identifies astrin, a spindle-associated protein
-
Mack GJ, Compton DA, (2001) Analysis of mitotic microtubule-associated proteins using mass spectrometry identifies astrin, a spindle-associated protein. Proceedings of the National Academy of Sciences of the United States of America 98: 14434-14439.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, pp. 14434-14439
-
-
Mack, G.J.1
Compton, D.A.2
-
25
-
-
0036860494
-
The mitotic-spindle-associated protein astrin is essential for progression through mitosis
-
Gruber J, Harborth J, Schnabel J, Weber K, Hatzfeld M, (2002) The mitotic-spindle-associated protein astrin is essential for progression through mitosis. J Cell Sci 115: 4053-4059.
-
(2002)
J Cell Sci
, vol.115
, pp. 4053-4059
-
-
Gruber, J.1
Harborth, J.2
Schnabel, J.3
Weber, K.4
Hatzfeld, M.5
-
26
-
-
0037016744
-
Structure-function analysis of the heat shock factor-binding protein reveals a protein composed solely of a highly conserved and dynamic coiled-coil trimerization domain
-
Tai LJ, McFall SM, Huang K, Demeler B, Fox SG, et al. (2002) Structure-function analysis of the heat shock factor-binding protein reveals a protein composed solely of a highly conserved and dynamic coiled-coil trimerization domain. The Journal of biological chemistry 277: 735-745.
-
(2002)
The Journal of Biological Chemistry
, vol.277
, pp. 735-745
-
-
Tai, L.J.1
McFall, S.M.2
Huang, K.3
Demeler, B.4
Fox, S.G.5
-
27
-
-
0034680599
-
Deletion analysis de_nes distinct functional domains for proteinprotein and nucleic acid interactions in the ORF1 protein of mouse LINE-1
-
Martin SL, Li J, Weisz JA, (2000) Deletion analysis de_nes distinct functional domains for proteinprotein and nucleic acid interactions in the ORF1 protein of mouse LINE-1. Journal of molecular biology 304: 11-20.
-
(2000)
Journal of Molecular Biology
, vol.304
, pp. 11-20
-
-
Martin, S.L.1
Li, J.2
Weisz, J.A.3
-
28
-
-
0037166266
-
Characterization of the matrilin coiled-coil domains reveals seven novel isoforms
-
Frank S, Schulthess T, Landwehr R, Lustig A, Mini T, et al. (2002) Characterization of the matrilin coiled-coil domains reveals seven novel isoforms. The Journal of biological chemistry 277: 19071-19079.
-
(2002)
The Journal of Biological Chemistry
, vol.277
, pp. 19071-19079
-
-
Frank, S.1
Schulthess, T.2
Landwehr, R.3
Lustig, A.4
Mini, T.5
-
29
-
-
0029042452
-
Epitope mapping and direct visualization of the parallel, in-register arrangement of the double-stranded coiled-coil in the NuMA protein
-
Harborth J, Weber K, Osborn M, (1995) Epitope mapping and direct visualization of the parallel, in-register arrangement of the double-stranded coiled-coil in the NuMA protein. The EMBO journal 14: 2447-2460.
-
(1995)
The EMBO Journal
, vol.14
, pp. 2447-2460
-
-
Harborth, J.1
Weber, K.2
Osborn, M.3
-
30
-
-
0037178817
-
Hantavirus nucleocapsid protein coiled-coil domains
-
Alfadhli A, Steel E, Finlay L, Bächinger HP, Barklis E, (2002) Hantavirus nucleocapsid protein coiled-coil domains. The Journal of biological chemistry 277: 27103-27108.
-
(2002)
The Journal of Biological Chemistry
, vol.277
, pp. 27103-27108
-
-
Alfadhli, A.1
Steel, E.2
Finlay, L.3
Bächinger, H.P.4
Barklis, E.5
-
31
-
-
0031750102
-
Analysis of the Saccharomyces spindle pole by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry
-
Wigge PA, Jensen ON, Holmes S, Souès S, Mann M, et al. (1998) Analysis of the Saccharomyces spindle pole by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. The Journal of cell biology 141: 967-977.
-
(1998)
The Journal of Cell Biology
, vol.141
, pp. 967-977
-
-
Wigge, P.A.1
Jensen, O.N.2
Holmes, S.3
Souès, S.4
Mann, M.5
-
32
-
-
0032562663
-
Tenascin-C hexabrachion assembly is a sequential two-step process initiated by coiled-coil alpha-helices
-
Kammerer RA, Schulthess T, Landwehr R, Lustig A, Fischer D, et al. (1998) Tenascin-C hexabrachion assembly is a sequential two-step process initiated by coiled-coil alpha-helices. The Journal of biological chemistry 273: 10602-10608.
-
(1998)
The Journal of Biological Chemistry
, vol.273
, pp. 10602-10608
-
-
Kammerer, R.A.1
Schulthess, T.2
Landwehr, R.3
Lustig, A.4
Fischer, D.5
-
33
-
-
0035167059
-
Amino acid substitutions of coiled-coil protein Tpr abrogate anchorage to the nuclear pore complex but not parallel, in-register homodimerization
-
Hase ME, Kuznetsov NV, Cordes VC, (2001) Amino acid substitutions of coiled-coil protein Tpr abrogate anchorage to the nuclear pore complex but not parallel, in-register homodimerization. Molecular biology of the cell 12: 2433-2452.
-
(2001)
Molecular Biology of the Cell
, vol.12
, pp. 2433-2452
-
-
Hase, M.E.1
Kuznetsov, N.V.2
Cordes, V.C.3
-
34
-
-
0034731490
-
Physical characterization of the procollagen module of human thrombospondin 1 expressed in insect cells
-
Misenheimer TM, Huwiler KG, Annis DS, Mosher DF, (2000) Physical characterization of the procollagen module of human thrombospondin 1 expressed in insect cells. The Journal of biological chemistry 275: 40938-40945.
-
(2000)
The Journal of Biological Chemistry
, vol.275
, pp. 40938-40945
-
-
Misenheimer, T.M.1
Huwiler, K.G.2
Annis, D.S.3
Mosher, D.F.4
-
35
-
-
27144489108
-
Protein database searches using compositionally adjusted substitution matrices
-
Altschul S, Wootton J, Gertz E, Agarwala R, Morgulis A, et al. (2005) Protein database searches using compositionally adjusted substitution matrices. Febs Journal 272: 5101-5109.
-
(2005)
Febs Journal
, vol.272
, pp. 5101-5109
-
-
Altschul, S.1
Wootton, J.2
Gertz, E.3
Agarwala, R.4
Morgulis, A.5
-
36
-
-
34347388470
-
UniRef: comprehensive and nonredundant UniProt reference clusters
-
Suzek B, Huang H, McGarvey P, Mazumder R, Wu C, (2007) UniRef: comprehensive and nonredundant UniProt reference clusters. Bioinformatics 23: 1282.
-
(2007)
Bioinformatics
, vol.23
, pp. 1282
-
-
Suzek, B.1
Huang, H.2
McGarvey, P.3
Mazumder, R.4
Wu, C.5
-
37
-
-
13244291417
-
Large scale hierarchical clustering of protein sequences
-
Krause A, Stoye J, Vingron M, (2005) Large scale hierarchical clustering of protein sequences. BMC bioinformatics 6: 15.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 15
-
-
Krause, A.1
Stoye, J.2
Vingron, M.3
-
39
-
-
51749088608
-
BioJava: an Open-Source Framework for Bioinformatics
-
Holland RCG, Down T, Pocock M, Prlic A, Huen D, et al. (2008) BioJava: an Open-Source Framework for Bioinformatics. Bioinformatics 24: btn397-2097.
-
(2008)
Bioinformatics
, vol.24
-
-
Holland, R.C.G.1
Down, T.2
Pocock, M.3
Prlic, A.4
Huen, D.5
-
40
-
-
0000353178
-
A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
-
Baum LE, Petrie T, Soules G, Weiss N, (1970) A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains. The Annals of Mathematical Statistics 41: 164-171.
-
(1970)
The Annals of Mathematical Statistics
, vol.41
, pp. 164-171
-
-
Baum, L.E.1
Petrie, T.2
Soules, G.3
Weiss, N.4
-
41
-
-
80052044455
-
-
StataCorp, college station, tx, Statacorp lp
-
StataCorp (2009) Stata statistical software: Release 11 college station, tx Statacorp lp.
-
(2009)
Stata Statistical Software: Release
, vol.11
-
-
|