-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
0029145638
-
Predicting coiled coils by use of pairwise residue correlations
-
Berger,B. et al. (1995) Predicting coiled coils by use of pairwise residue correlations. Proc. Natl Acad. Sci. USA, 92, 8259-8263.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8259-8263
-
-
Berger, B.1
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
4
-
-
0032541424
-
Three-dimensional solution structure of the 44 kDa ectodomain of SIV gp41
-
Caffrey,M. et al. (1998) Three-dimensional solution structure of the 44 kDa ectodomain of SIV gp41. EMBO J., 17, 4572-4584.
-
(1998)
EMBO J
, vol.17
, pp. 4572-4584
-
-
Caffrey, M.1
-
5
-
-
0348129526
-
The ASTRAL compendium in 2004
-
Chandonia,J.M. et al. (2004) The ASTRAL compendium in 2004. Nucleic Acids Res., 32, D189-D192.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Chandonia, J.M.1
-
6
-
-
0025130161
-
Structural features in the heptad substructure and longer range repeats of two-stranded alpha-fibrous proteins
-
Conway,J.F. and Parry,D.A. (1990) Structural features in the heptad substructure and longer range repeats of two-stranded alpha-fibrous proteins. Int. J. Biol. Macromol., 12, 328-334.
-
(1990)
Int. J. Biol. Macromol
, vol.12
, pp. 328-334
-
-
Conway, J.F.1
Parry, D.A.2
-
7
-
-
0035999986
-
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
-
Delorenzi,M. and Speed,T. (2002) An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Bioinformatics, 18, 617-625.
-
(2002)
Bioinformatics
, vol.18
, pp. 617-625
-
-
Delorenzi, M.1
Speed, T.2
-
8
-
-
70350649716
-
-
Durbin,R. et al. (1998) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, The Edinburgh Building, Cambridge, UK.
-
Durbin,R. et al. (1998) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, The Edinburgh Building, Cambridge, UK.
-
-
-
-
9
-
-
33947417295
-
Anew decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
-
Fariselli,P. et al. (2005)Anew decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinformatics, 6(Suppl. 4), S12.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 4
-
-
Fariselli, P.1
-
10
-
-
34548075339
-
Prediction of structurally-determined coiled-coil domains with Hidden Markov Models
-
Fariselli,P. et al. (2007) Prediction of structurally-determined coiled-coil domains with Hidden Markov Models. Lecture Notes in Computer Science, 4414, 292-302.
-
(2007)
Lecture Notes in Computer Science
, vol.4414
, pp. 292-302
-
-
Fariselli, P.1
-
11
-
-
0344628627
-
Historical review: Another 50th anniversary-new periodicities in coiled coils
-
Gruber,M. and Lupas,A.N. (2003) Historical review: Another 50th anniversary-new periodicities in coiled coils. Trends Biochem. Sci. 28, 679-685.
-
(2003)
Trends Biochem. Sci
, vol.28
, pp. 679-685
-
-
Gruber, M.1
Lupas, A.N.2
-
12
-
-
23144450570
-
REPPER-repeats and their periodicities in fibrous proteins
-
Gruber,M. et al. (2005) REPPER-repeats and their periodicities in fibrous proteins. Nucleic Acids Res., 33, 239-243.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 239-243
-
-
Gruber, M.1
-
13
-
-
33747788700
-
Comparative analysis of coiled-coil prediction methods
-
Gruber,M. et al. (2006) Comparative analysis of coiled-coil prediction methods. J. Struct. Biol., 155, 140-145.
-
(2006)
J. Struct. Biol
, vol.155
, pp. 140-145
-
-
Gruber, M.1
-
14
-
-
0028834461
-
A trimeric structural domain of the HIV-1 transmembrane glycoprotein
-
Lu,M. et al. (1995) A trimeric structural domain of the HIV-1 transmembrane glycoprotein. Nat. Struct. Biol., 2, 1075-1082.
-
(1995)
Nat. Struct. Biol
, vol.2
, pp. 1075-1082
-
-
Lu, M.1
-
15
-
-
0030004228
-
Prediction and analysis of coiled-coil structures
-
Lupas,A. (1996) Prediction and analysis of coiled-coil structures. Methods Enzymol., 266, L513-L525.
-
(1996)
Methods Enzymol
, vol.266
-
-
Lupas, A.1
-
16
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas,A. et al. (1991) Predicting coiled coils from protein sequences. Science, 252, 1162-1164.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
-
17
-
-
17444424974
-
The structure of alpha-helical coiled coils
-
Lupas,A.N. and Gruber,M. (2005) The structure of alpha-helical coiled coils. Adv. Protein Chem., 70, 37-78.
-
(2005)
Adv. Protein Chem
, vol.70
, pp. 37-78
-
-
Lupas, A.N.1
Gruber, M.2
-
18
-
-
0032483021
-
Crystal structure of the simian immunodeficiency virus (SIV) gp41 core: Conserved helical interactions underlie the broad inhibitory activity of gp41 peptides
-
Malashkevich,V.N. et al. (1998) Crystal structure of the simian immunodeficiency virus (SIV) gp41 core: Conserved helical interactions underlie the broad inhibitory activity of gp41 peptides. Proc. Natl Acad. Sci. USA, 95, 9134-9139.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 9134-9139
-
-
Malashkevich, V.N.1
-
19
-
-
0033020204
-
Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-Å resolution
-
Malashkevich,V.N. et al. (1999) Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-Å resolution. PNAS, 96, 2662-2267.
-
(1999)
PNAS
, vol.96
, pp. 2662-2267
-
-
Malashkevich, V.N.1
-
20
-
-
4243671284
-
A sequence-profile-based HMM for predicting and discriminating b-barrel membrane proteins
-
Martelli,P.L. et al. (2002) A sequence-profile-based HMM for predicting and discriminating b-barrel membrane proteins. Bioinformatics, 18, S46-S53.
-
(2002)
Bioinformatics
, vol.18
-
-
Martelli, P.L.1
-
21
-
-
0034086980
-
The core of the respiratory syncytial virus fusion protein is a trimeric coiled coil
-
Matthews,J.M. et al. (2000) The core of the respiratory syncytial virus fusion protein is a trimeric coiled coil. J. Virol., 74 5911-5920.
-
(2000)
J. Virol
, vol.74
, pp. 5911-5920
-
-
Matthews, J.M.1
-
22
-
-
32144456009
-
Paircoil2: Improved prediction of coiled coils from sequence
-
McDonnell,A.V. et al. (2006) Paircoil2: Improved prediction of coiled coils from sequence. Bioinformatics, 22, 356-358.
-
(2006)
Bioinformatics
, vol.22
, pp. 356-358
-
-
McDonnell, A.V.1
-
23
-
-
58149119313
-
A periodic table of coiled-coil protein structures
-
Moutevelis,E. and Woolfson,D.N. (2008) A periodic table of coiled-coil protein structures. J. Mol. Biol., 385, 726-732.
-
(2008)
J. Mol. Biol
, vol.385
, pp. 726-732
-
-
Moutevelis, E.1
Woolfson, D.N.2
-
24
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin,A.G. et al. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
-
25
-
-
51349107479
-
Fifty years of coiled-coils and alpha-helical bundles: A close relationship between sequence and structure
-
Parry,D.A. et al. (2008) Fifty years of coiled-coils and alpha-helical bundles: A close relationship between sequence and structure. J. Struct. Biol., 163, 258-269.
-
(2008)
J. Struct. Biol
, vol.163
, pp. 258-269
-
-
Parry, D.A.1
-
26
-
-
0027169638
-
Improved prediction of protein secondary structure by use of sequence profiles and neural networks
-
Rost,B. and Sander,C. (1993) Improved prediction of protein secondary structure by use of sequence profiles and neural networks. Proc. Natl Acad. Sci. USA, 90, 7558-7562.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 7558-7562
-
-
Rost, B.1
Sander, C.2
-
27
-
-
0033618320
-
LearnCoil-VMF: Computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins
-
Singh,M. et al. (1999) LearnCoil-VMF: Computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins. J. Mol. Biol, 290, 1031-1041.
-
(1999)
J. Mol. Biol
, vol.290
, pp. 1031-1041
-
-
Singh, M.1
-
28
-
-
58149185130
-
CC+: A relational database of coiled-coil structures
-
Testa,O.D. et al. (2009) CC+: A relational database of coiled-coil structures. Nucleic Acids Res., 37, D315-D322.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Testa, O.D.1
-
29
-
-
38549097071
-
The Universal Protein Resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium (2008) The Universal Protein Resource (UniProt). Nucleic Acids Res., 36, D190-D195.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
30
-
-
0035853291
-
Socket: A program for identifying and analysing coiled-coil motifs within protein structures
-
Walshaw,J. and Woolfson,D.N. (2001) Socket: A program for identifying and analysing coiled-coil motifs within protein structures. J. Mol. Biol., 307, 1427-1450.
-
(2001)
J. Mol. Biol
, vol.307
, pp. 1427-1450
-
-
Walshaw, J.1
Woolfson, D.N.2
-
31
-
-
0030987407
-
MultiCoil: A program for predicting two- and three-stranded coiled coils
-
Wolf,E. et al. (1997) MultiCoil: A program for predicting two- and three-stranded coiled coils. Protein Sci., 6, 1179-1189.
-
(1997)
Protein Sci
, vol.6
, pp. 1179-1189
-
-
Wolf, E.1
-
32
-
-
0033081846
-
A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment
-
Zemla,A et al. (1999) A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins, 34, 220-223.
-
(1999)
Proteins
, vol.34
, pp. 220-223
-
-
Zemla, A.1
|