Putative amino acid determinants of the emergence of the 2009 influenza A (H1N1) virus in the human population

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 33, 2011, Pages 13522-13527

  Meroz, Daphna ^a   Yoon, Sun Woo ^b   Ducatez, Mariette F ^b   Fabrizio, Thomas P ^b   Webby, Richard J ^b   Hertz, Tomer ^c   Ben Tal, Nir ^a  

^a TEL AVIV UNIVERSITY   (Israel)

^b ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^c Fred Hutchinson Cancer Research Center   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; HEMAGGLUTININ;

AMINO ACID ANALYSIS; ANTIGEN RECOGNITION; ARTICLE; BINDING AFFINITY; ERYTHROCYTE; HUMAN; INFLUENZA VIRUS A H1N1; NONHUMAN; POPULATION; PRIORITY JOURNAL; PROTEIN LOCALIZATION; RECEPTOR BINDING; VIRUS INFECTION; VIRUS STRAIN; VIRUS VIRULENCE;

AMINO ACIDS; ANIMALS; ERYTHROCYTES; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; MICE; SPECIES SPECIFICITY; SWINE; VIRULENCE;

INFLUENZA A VIRUS; MUS; SUIDAE;

EID: 80051996895     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1014854108     Document Type: Article

References (44)

1. Dawood F.S., et al. (2009) Emergence of a novel swine-origin influenza A (H1N1) virus in humans: Novel swine-origin influenza A (H1N1) virus investigation team. N Engl J Med 360:2605-2615.
2. World Health Organization (2010) Pandemic (H1N1) 2009 - update 101 (http://www.who.int/csr/don/2010-05-21.
3. Sinha N.K., Roy A., Das B., Das S., Basak S. (2009) Evolutionary complexities of swine flu H1N1 gene sequences of 2009. Biochem Biophys Res Commun 390:349-351.
4. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka Y. (1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56:152-179.
5. Hay A.J., Gregory V., Douglas A.R., Lin Y.P. (2001) The evolution of human influenza viruses. Philos Trans R Soc Lond B Biol Sci 356:1861-1870. (Pubitemid 34099091)
6. Kendal A.P., Goldfield M., Noble G.R., Dowdle W.R. (1977) Identification and preliminary antigenic analysis of swine influenza-like viruses isolated during an influenza outbreak at Fort Dix, New Jersey. J Infect Dis 136(Suppl):S381-S385. (Pubitemid 8293877)
7. Myers K.P., Olsen C.W., Gray G.C. (2007) Cases of swine influenza in humans: A review of the literature. Clin Infect Dis 44:1084-1088. (Pubitemid 46580277)
8. Shinde V., et al. (2009) Triple-reassortant swine influenza A (H1) in humans in the United States, 2005-2009. N Engl J Med 360:2616-2625.
9. Childs R.A., et al. (2009) Receptor-binding specificity of pandemic influenza A (H1N1) 2009 virus determined by carbohydrate microarray. Nat Biotechnol 27:797-799.
10. Maines T.R., et al. (2009) Transmission and pathogenesis of swine-origin 2009 A(H1N1) influenza viruses in ferrets and mice. Science 325:484-487.
11. Garten R.J., et al. (2009) Antigenic and genetic characteristics of swine-origin 2009 A (H1N1) influenza viruses circulating in humans. Science 325:197-201.
12. Itoh Y., et al. (2009) In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses. Nature 460:1021-1025.
13. Freund Y., Mason L. (1999) The alternating decision tree algorithm. Proceedings of the 16th International Conference on Machine Learning (Morgan Kaufmann Publishers, San Francisco), pp 124-133.
14. Bao Y.M., et al. (2008) The influenza virus resource at the National Center for Biotechnology Information. J Virol 82:596-601.
15. Sorrell E.M., Wan H., Araya Y., Song H., Perez D.R. (2009) Minimal molecular constraints for respiratory droplet transmission of an avian-human H9N2 influenza A virus. Proc Natl Acad Sci USA 106:7565-7570.
16. Tumpey T.M., et al. (2007) A two-amino acid change in the hemagglutinin of the 1918 influenza virus abolishes transmission. Science 315:655-659. (Pubitemid 46214711)
17. Caton A.J., Brownlee G.G., Yewdell J.W., Gerhard W. (1982) The antigenic structure of the influenza virus A/PR/8/34 hemagglutinin (H1 subtype). Cell 31:417-427. (Pubitemid 13178866)
18. Xu R., et al. (2010) Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus. Science 328:357-360.
19. Wei C.J., et al. (2010) Cross-neutralization of 1918 and 2009 influenza viruses: Role of glycans in viral evolution and vaccine design. Sci Transl Med 2:24ra21.
20. Matrosovich M.N., et al. (1997) Avian influenza A viruses differ from human viruses by recognition of sialyloligosaccharides and gangliosides and by a higher conservation of the HA receptor-binding site. Virology 233:224-234. (Pubitemid 27348784)
21. Suphaphiphat P., et al. (2010) Mutations at positions 186 and 194 in the HA gene of the 2009 H1N1 pandemic influenza virus improve replication in cell culture and eggs. Virol J 7:157.
22. Matrosovich M., et al. (2000) Early alterations of the receptor-binding properties of H1, H2, and H3 avian influenza virus hemagglutinins after their introduction into mammals. J Virol 74:8502-8512. (Pubitemid 30666701)
23. Neumann G., Noda T., Kawaoka Y. (2009) Emergence and pandemic potential of swine-origin H1N1 influenza virus. Nature 459:931-939.
24. Medeiros R., Escriou N., Naffakh N., Manuguerra J.C., Van der Werf S. (2001) Hemagglutinin residues of recent human A(H3N2) influenza viruses that contribute to the inability to agglutinate chicken erythrocytes. Virology 289:74-85. (Pubitemid 33016239)
25. Ito T., et al. (1997) Receptor specificity of influenza A viruses correlates with the agglutination of erythrocytes from different animal species. Virology 227:493-499. (Pubitemid 27241043)
26. Boon A.C., et al. (2010) Cross-reactive neutralizing antibodies directed against pandemic H1N1 2009 virus are protective in a highly sensitive DBA/2 mouse influenza model. J Virol 84:7662-7667.
27. Chen G.W., et al. (2006) Genomic signatures of human versus avian influenza A viruses. Emerg Infect Dis 12:1353-1360.
28. Finkelstein D.B., et al. (2007) Persistent host markers in pandemic and H5N1 influenza viruses. J Virol 81:10292-10299. (Pubitemid 47463304)
29. Miotto O., Heiny A., Tan T.W., August J.T., Brusic V. (2008) Identification of human-tohuman transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinformatics 9(Suppl 1):S18.
30. Allen J.E., Gardner S.N., Vitalis E.A., Slezak T.R. (2009) Conserved amino acid markers from past influenza pandemic strains. BMC Microbiol 9:77.
31. Bloom J.D., Gong L.I., Baltimore D. (2010) Permissive secondary mutations enable the evolution of influenza oseltamivir resistance. Science 328:1272-1275.
32. Tamuri A.U., Dos Reis M., Hay A.J., Goldstein R.A. (2009) Identifying changes in selective constraints: Host shifts in influenza. PLoS Comput Biol 5:e1000564.
33. Forsberg R., Christiansen F.B. (2003) A codon-based model of host-specific selection in parasites, with an application to the influenza A virus. Mol Biol Evol 20:1252-1259. (Pubitemid 36961243)
34. Holmes E.C. (2010) Virology. Helping the resistance. Science 328:1243-1244.
35. Katz J., et al. (2009) Serum cross-reactive antibody response to a novel influenza A (H1N1) virus after vaccination with seasonal influenza vaccine. MMWR Morb Mortal Wkly Rep 58:521-524.
36. Treanor J. (2004) Influenza vaccine - Outmaneuvering antigenic shift and drift. N Engl J Med 350:218-220.
37. Gambaryan A.S., et al. (2005) Receptor-binding properties of swine influenza viruses isolated and propagated in MDCK cells. Virus Res 114:15-22. (Pubitemid 41586593)
38. Ito T., et al. (1998) Molecular basis for the generation in pigs of influenza A viruses with pandemic potential. J Virol 72:7367-7373. (Pubitemid 28377868)
39. MaW., Kahn R.E., Richt J.A. (2008) The pig as a mixing vessel for influenza viruses: Human and veterinary implications. J Mol Genet Med 3:158-166.
40. Ye J., et al. (2010) Variations in the hemagglutinin of the 2009 H1N1 pandemic virus: Potential for strains with altered virulence phenotype? PLoS Pathog 6:e1001145.
41. De Vries R.P., et al. (2011) Only two residues are responsible for the dramatic difference in receptor binding between swine and new pandemic H1 hemagglutinin. J Biol Chem 286:5868-5875.
42. Ha Y., Stevens D.J., Skehel J.J., Wiley D.C. (2002) H5 avian and H9 swine influenza virus haemagglutinin structures: Possible origin of influenza subtypes. EMBO J 21:865-875. (Pubitemid 34206160)
43. Edgar R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797.
44. Lin T., et al. (2009) The hemagglutinin structure of an avian H1N1 influenza A virus. Virology 392:73-81.