Severe Hindrance of viral infection propagation in spatially extended hosts

PLoS ONE

Volumn 6, Issue 8, 2011, Pages

  Capitán, José A ^a,b   Cuesta, José A ^b,c   Manrubia, Susanna C ^d   Aguirre, Jacobo ^d  

^a UNIVERSITAT ROVIRA I VIRGILI   (Spain)

^b Grupo Interdisciplinar de Sistemas Complejos (GISC)   (Spain)

^c UNIVERSIDAD CARLOS III DE MADRID   (Spain)

^d CSIC   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL HETEROGENEITY; CONTROLLED STUDY; CROP; GEOMETRY; HOST CELL; HOST PARASITE INTERACTION; HOST RESISTANCE; MICROPROPAGATION; MOLECULAR DYNAMICS; NONHUMAN; PHENOTYPE; PLANT LEAF; STATISTICAL ANALYSIS; VIRUS INFECTION; VIRUS REPLICATION; BIOLOGICAL MODEL; COMMUNICABLE DISEASE; DISEASE TRANSMISSION; PATHOGENICITY; PHYSIOLOGY; PROBABILITY; TIME; VIRION; VIROLOGY; VIRUS;

COMMUNICABLE DISEASES; MODELS, BIOLOGICAL; PROBABILITY; TIME FACTORS; VIRION; VIRUS DISEASES; VIRUS REPLICATION; VIRUSES;

EID: 80051989263     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023358     Document Type: Article

References (50)

1. Koonin EV, Senkevich TG, Dolja VV, (2006) The ancient virus world and evolution of cells. Biol Direct 1: 29.
2. Drake JW, Holland JJ, (1999) Mutation rates among rna viruses. Proc Natl Acad Sci USA 96: 13910-13913.
3. Perales C, Agudo R, Tejero M, Manrubia SC, Domingo E, (2009) Benefits of sequential inhibitormutagen lethal mutagenesis treatments. PLoS Pathog 5: e1000658.
4. Wilke CO, (2005) Quasispecies theory in the context of population genetics. BMC Evol Biol 5: 44.
5. Bull JJ, Meyers LA, Lachmann M, (2005) Quasispecies made simple. PLoS Comput Biol 1: 450-460.
6. Takeuchi N, Hogeweg P, (2007) Error-threshold exists in landscapes with lethal mutants. BMC Evol Biol 7: 15.
7. Manrubia SC, Domingo E, Lázaro E, (2010) Pathways to extinction- beyond the error threshold. Phil Trans R Soc 365: 1943-1952.
8. Eigen M, Schuster P, (1979) The hypercycle, a principle of natural self-organization New York Springer-Verlag.
9. Lázaro E, Escarmís C, Pérez-Mercader J, Manrubia SC, Domingo E, (2003) Resistance of virus to extinction on bottleneck passages: Study of a decaying and uctuating pattern of fitness loss. Proc Natl Acad Sci USA 100: 10830-10835.
10. Gabriel W, Lynch M, Burger R, (1993) Muller's ratchet and mutational meltdowns. Evolution 47: 1744-1757.
11. Grande-Pérez A, Lázaro E, Lowenstein P, Domingo E, Manrubia SC, (2005) Suppression of viral infectivity through lethal defection. Proc Natl Acad Sci USA 102: 4448-4452.
12. Iranzo J, Manrubia SC, (2009) Stochastic extinction of viral infectivity through the action of defectors. Europhys Lett 85: 18001.
13. Wahl LM, Krakauer DC, (2000) Models of experimental evolution: The role of genetic change and selective necessity. Genetics 156: 1437-1448.
14. Eigen M, (2002) Error catastrophe and antiviral strategy. Proc Natl Acad Sci USA 99: 13374-13376.
15. Petermann T, de los Ríos P, (2004) Cluster approximations for epidemic processes: A systematic description of correlations beyond the pair level. J Theor Biol 229: 1-11.
16. Barrat A, Barthélemy M, Vespignani A, (2008) Dynamical processes on complex networks Cambridge Cambridge University Press.
17. Aguirre J, Manrubia SC, (2008) Effects of spatial competition on the diversity of a quasispecies. Phys Rev Lett 100: 38106-4.
18. Cases-González C, Arribas M, Domingo E, Lázaro E, (2008) Beneficial effects of population bottlenecks in an rna virus evolving at increased error rate. J Mol Biol 384: 1120-1129.
19. Coutts BA, Thomas-Carroll ML, Jones RAC, (2004) Analysing spatial patterns of spread of lettuce necrotic yellows virus and lettuce big-vein disease in lettuce field plantings. Ann Appl Biol 145: 339-343.
20. Takahashi T, Sugawara T, Yamatsuta T, Isogai M, Natsuaki T, et al. (2007) Analysis of the spatial distribution of identical and two distinct virus populations differently labeled with cyan and yellow uorescent proteins in coinfected plants. Phytopathol 97: 1200-1206.
21. Lee Y, Yin J, (1996) Detection of evolving viruses. Nat Biotech 14: 491-493.
22. García-Arenal F, Fraile A, Malpica JM, (2001) Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39: 157-186.
23. Rand DA, Keeling M, Wilson HB, (1995) Invasion, stability and evolution to criticality in spatially extended, artificial host-pathogen ecologies. Proc R Soc Lond B 259: 55-63.
24. Altmeyer S, McCaskill JS, (2001) Error threshold for spatially resolved evolution in the quasispecies model. Phys Rev Lett 86: 5819-5822.
25. Toyabe S, Sano M, (2005) Spatial suppression of error catastrophe in a growing pattern. Physica D 203: 1-8.
26. Pastor-Satorras R, Solé RV, (2001) Field theory for a reaction-diffusion model of quasispecies dynamics. Phys Rev E 64: 51909.
27. Cuesta JA, Aguirre J, Capitán JA, Manrubia SC, (2011) The struggle for space: Viral extinction through competition for cells. Phys Rev Lett 106: 028104-4.
28. Domany E, Kinzel W, (1984) Equivalence of cellular automata to ising models and directed percolation. Phys Rev Lett 53: 311-314.
29. Sanjuán R, (2010) Mutational fitness effects in rna and single-stranded dna viruses: common patterns revealed by site-directed mutagenesis studies. Phil Trans R Soc B 27: 1975-1982.
30. Parera M, Fernández G, Clotet B, Martínez MA, (2007) Hiv-1 protease catalytic efficiency effects caused by random single amino acid substitutions. Mol Biol Evol 24: 382-387.
31. Manrubia SC, Lázaro E, (2006) Viral evolution. Phys Life Revs 3: 65-92.
32. Miralles R, Gerrish PJ, Moya A, Elena SF, (1999) Clonal interference and the evolution of rna viruses. Science 285: 1745-1747.
33. Orr HA, (2003) The distribution of fitness effects among beneficial mutations. Genetics 163: 1519-1526.
34. Sanjuán R, Moya A, Elena SF, (2004) The distribution of fitness effects caused by single-nucleotide substitutions in an rna virus. Proc Natl Acad Sci USA 101: 8396-8401.
35. Eyre-Walker A, Keightley PDR, (2007) The distribution of fitness effects of new mutations. Nat Rev Genet 8: 610-618.
36. Manrubia SC, Escarmís C, Domingo E, Lázaro E, (2005) High mutation rates, bottlenecks, and robustness of rna viral quasispecies. Gene 347: 273-282.
37. Hofbauer J, Sigmund K, (1998) Evolutionary games and population dynamics Cambridge Cambridge University Press.
38. Knipe DM, Howley PM, (2007) Fields Virology, volume I Philadelphia, USA Lippincott, William & Wilkins.
39. Manrubia SC, García-Arriaza J, Domingo E, Escarmís C, (2006) Long-range transport and universality classes in in vitro viral infection spread. Europhys Lett 74: 547-6.
40. Hinrichsen H, (2000) Non-equilibrium critical phenomena and phase transitions into absorbing states. Adv Phys 49: 815-958.
41. Broadbent SR, Hammersley JM, (1957) Percolation processes. crystals and mazes. Proc Camb phil Soc 53: 629-641.
42. Kinzel W, (1983) Directed percolation. In: Deutscher G, Zallen R, Adler J, editors. Percolation structures and processes: Annals of the Israel physical society Bristol Adam Hilger pp. 143-171 volume V.
43. Janssen HK, (1981) On the non-equilibrium phase-transition in reaction-di_usion systems with anabsorbing stationary state. Z Phys B: Cond Mat 42: 151-154.
44. Grassberger P, (1982) On phase transitions in schögl's second model. Z Phys B 47: 365-374.
45. Cuesta JA, (2010) Huge progeny production during the transient of a quasi-species model of viral infection, reproduction and mutation. Math Comp Mod in press.
46. Aguirre J, Lázaro E, Manrubia SC, (2009) A trade-off between neutrality and adaptability limits the optimization of viral quasispecies. J Theor Biol 261: 148-155.
47. Tomé T, (1994) Spreading of damage in the domany-kinzel cellular automaton: A mean-field approach. Physica A 212: 99-109.
48. Atman APF, Dickman R, (2002) Quasistationary distributions for the domany-kinzel stochastic cellular automaton. Phys Rev E 66: 046135-9.
49. Kang BC, Yeam I, Jahn MM, (2005) Genetics of plant virus resistance. Annu Rev Phytopathol 43: 581-621.
50. Grassberger P, (1983) On the critical-behavior of the general epidemic process and dynamical percolation. Math Biosc 63: 157-172.