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Volumn 384, Issue 5, 2008, Pages 1120-1129

Beneficial Effects of Population Bottlenecks in an RNA Virus Evolving at Increased Error Rate

Author keywords

error rate; extinction; mutagenesis; population bottlenecks; RNA viruses

Indexed keywords

AZACITIDINE;

EID: 56949100821     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.10.014     Document Type: Article
Times cited : (32)

References (49)
  • 1
    • 0017038871 scopus 로고
    • The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate
    • Batschelet E., Domingo E., and Weissmann C. The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate. Gene 1 (1976) 27-32
    • (1976) Gene , vol.1 , pp. 27-32
    • Batschelet, E.1    Domingo, E.2    Weissmann, C.3
  • 2
    • 0027221640 scopus 로고
    • Rates of spontaneous mutation among RNA viruses
    • Drake J.W. Rates of spontaneous mutation among RNA viruses. Proc. Natl Acad. Sci. USA 90 (1993) 4171-4175
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 4171-4175
    • Drake, J.W.1
  • 3
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo E., and Holland J.J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51 (1997) 151-178
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 5
    • 0015133749 scopus 로고
    • Self-organization of matter and the evolution of biological macromolecules
    • Eigen M. Self-organization of matter and the evolution of biological macromolecules. Naturwissenschaften 58 (1971) 465-523
    • (1971) Naturwissenschaften , vol.58 , pp. 465-523
    • Eigen, M.1
  • 7
    • 33645510409 scopus 로고    scopus 로고
    • Exact solution of the Eigen model with general fitness functions and degradation rates
    • Saakian D.B., and Hu C.K. Exact solution of the Eigen model with general fitness functions and degradation rates. Proc. Natl Acad. Sci. USA 103 (2006) 4935-4939
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 4935-4939
    • Saakian, D.B.1    Hu, C.K.2
  • 10
    • 0020437078 scopus 로고
    • Self-replication with errors. A model for polynucleotide replication
    • Swetina J., and Schuster P. Self-replication with errors. A model for polynucleotide replication. Biophys. Chem. 16 (1982) 329-345
    • (1982) Biophys. Chem. , vol.16 , pp. 329-345
    • Swetina, J.1    Schuster, P.2
  • 11
    • 0037108885 scopus 로고    scopus 로고
    • Error catastrophe and antiviral strategy
    • Eigen M. Error catastrophe and antiviral strategy. Proc. Natl Acad. Sci. USA 99 (2002) 13374-13376
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 13374-13376
    • Eigen, M.1
  • 12
    • 11844274684 scopus 로고    scopus 로고
    • The error threshold
    • Biebricher C.K., and Eigen M. The error threshold. Virus Res. 107 (2005) 117-127
    • (2005) Virus Res. , vol.107 , pp. 117-127
    • Biebricher, C.K.1    Eigen, M.2
  • 13
    • 25144524546 scopus 로고    scopus 로고
    • Invariant aphthovirus consensus nucleotide sequence in the transition to error catastrophe
    • González-López C., Gómez-Mariano G., Escarmís C., and Domingo E. Invariant aphthovirus consensus nucleotide sequence in the transition to error catastrophe. Infect. Genet. Evol. 5 (2005) 366-374
    • (2005) Infect. Genet. Evol. , vol.5 , pp. 366-374
    • González-López, C.1    Gómez-Mariano, G.2    Escarmís, C.3    Domingo, E.4
  • 17
    • 31144445870 scopus 로고    scopus 로고
    • Mechanisms of action of ribavirin against distinct viruses
    • Graci J.D., and Cameron C.E. Mechanisms of action of ribavirin against distinct viruses. Rev. Med. Virol. 16 (2006) 37-48
    • (2006) Rev. Med. Virol. , vol.16 , pp. 37-48
    • Graci, J.D.1    Cameron, C.E.2
  • 20
    • 34248577724 scopus 로고    scopus 로고
    • Insights into RNA virus mutant spectrum and lethal mutagenesis events: replicative interference and complementation by multiple point mutants
    • Perales C., Mateo R., Mateu M.G., and Domingo E. Insights into RNA virus mutant spectrum and lethal mutagenesis events: replicative interference and complementation by multiple point mutants. J. Mol. Biol. 369 (2007) 985-1000
    • (2007) J. Mol. Biol. , vol.369 , pp. 985-1000
    • Perales, C.1    Mateo, R.2    Mateu, M.G.3    Domingo, E.4
  • 21
    • 38349170440 scopus 로고    scopus 로고
    • Repeated bottleneck transfers can lead to non-cytocidal forms of a cytopathic virus: implications for viral extinction
    • Escarmís C., Lázaro E., Arias A., and Domingo E. Repeated bottleneck transfers can lead to non-cytocidal forms of a cytopathic virus: implications for viral extinction. J. Mol. Biol. 376 (2008) 367-379
    • (2008) J. Mol. Biol. , vol.376 , pp. 367-379
    • Escarmís, C.1    Lázaro, E.2    Arias, A.3    Domingo, E.4
  • 22
    • 0028922116 scopus 로고
    • Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness
    • Novella I.S., Elena S.F., Moya A., Domingo E., and Holland J.J. Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness. J. Virol. 69 (1995) 2869-2872
    • (1995) J. Virol. , vol.69 , pp. 2869-2872
    • Novella, I.S.1    Elena, S.F.2    Moya, A.3    Domingo, E.4    Holland, J.J.5
  • 23
    • 0025244957 scopus 로고
    • Fitness of RNA virus decreased by Muller's ratchet
    • Chao L. Fitness of RNA virus decreased by Muller's ratchet. Nature 348 (1990) 454-455
    • (1990) Nature , vol.348 , pp. 454-455
    • Chao, L.1
  • 24
    • 0026729636 scopus 로고
    • Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet
    • Duarte E., Clarke D., Moya A., Domingo E., and Holland J. Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet. Proc. Natl Acad. Sci. USA 89 (1992) 6015-6019
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 6015-6019
    • Duarte, E.1    Clarke, D.2    Moya, A.3    Domingo, E.4    Holland, J.5
  • 26
    • 0345471842 scopus 로고    scopus 로고
    • Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events
    • Yuste E., Sánchez-Palomino S., Casado C., Domingo E., and López-Galíndez C. Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events. J. Virol. 73 (1999) 2745-2751
    • (1999) J. Virol. , vol.73 , pp. 2745-2751
    • Yuste, E.1    Sánchez-Palomino, S.2    Casado, C.3    Domingo, E.4    López-Galíndez, C.5
  • 27
    • 34248359479 scopus 로고    scopus 로고
    • Fitness declines in tobacco etch virus upon serial bottleneck transfers
    • de la Iglesia F., and Elena S.F. Fitness declines in tobacco etch virus upon serial bottleneck transfers. J. Virol. 81 (2007) 4941-4947
    • (2007) J. Virol. , vol.81 , pp. 4941-4947
    • de la Iglesia, F.1    Elena, S.F.2
  • 28
    • 33846886349 scopus 로고    scopus 로고
    • The fitness effect of mutations across environments: a survey in light of fitness landscape models
    • Martin G., and Lenormand T. The fitness effect of mutations across environments: a survey in light of fitness landscape models. Evol. Int. J. Org. Evol. 60 (2006) 2413-2427
    • (2006) Evol. Int. J. Org. Evol. , vol.60 , pp. 2413-2427
    • Martin, G.1    Lenormand, T.2
  • 30
    • 0036301071 scopus 로고    scopus 로고
    • Resistance to extinction of low fitness virus subjected to plaque-to-plaque transfers: diversification by mutation clustering
    • Escarmís C., Gómez-Mariano G., Dávila M., Lázaro E., and Domingo E. Resistance to extinction of low fitness virus subjected to plaque-to-plaque transfers: diversification by mutation clustering. J. Mol. Biol. 315 (2002) 647-661
    • (2002) J. Mol. Biol. , vol.315 , pp. 647-661
    • Escarmís, C.1    Gómez-Mariano, G.2    Dávila, M.3    Lázaro, E.4    Domingo, E.5
  • 31
    • 0036340533 scopus 로고    scopus 로고
    • Modeling viral genome fitness evolution associated with serial bottleneck events: evidence of stationary states of fitness
    • Lázaro E., Escarmís C., Domingo E., and Manrubia S.C. Modeling viral genome fitness evolution associated with serial bottleneck events: evidence of stationary states of fitness. J. Virol. 76 (2002) 8675-8681
    • (2002) J. Virol. , vol.76 , pp. 8675-8681
    • Lázaro, E.1    Escarmís, C.2    Domingo, E.3    Manrubia, S.C.4
  • 32
    • 15544380169 scopus 로고    scopus 로고
    • High mutation rates, bottlenecks, and robustness of RNA viral quasispecies
    • Manrubia S.C., Escarmís C., Domingo E., and Lázaro E. High mutation rates, bottlenecks, and robustness of RNA viral quasispecies. Gene 347 (2005) 273-282
    • (2005) Gene , vol.347 , pp. 273-282
    • Manrubia, S.C.1    Escarmís, C.2    Domingo, E.3    Lázaro, E.4
  • 33
    • 0013873378 scopus 로고
    • Comparison of two serologically distinct ribonucleic acid bacteriophages. I. Properties of the viral particles
    • Overby L.R., Barlow G.H., Doi R.H., Jacob M., and Spiegelman S. Comparison of two serologically distinct ribonucleic acid bacteriophages. I. Properties of the viral particles. J. Bacteriol. 91 (1966) 442-448
    • (1966) J. Bacteriol. , vol.91 , pp. 442-448
    • Overby, L.R.1    Barlow, G.H.2    Doi, R.H.3    Jacob, M.4    Spiegelman, S.5
  • 34
    • 0017806301 scopus 로고
    • Nucleotide sequence heterogeneity of an RNA phage population
    • Domingo E., Sabo D., Taniguchi T., and Weissmann C. Nucleotide sequence heterogeneity of an RNA phage population. Cell 13 (1978) 735-744
    • (1978) Cell , vol.13 , pp. 735-744
    • Domingo, E.1    Sabo, D.2    Taniguchi, T.3    Weissmann, C.4
  • 35
    • 0017051073 scopus 로고
    • In vitro site-directed mutagenesis: generation and properties of an infectious extracistronic mutant of bacteriophage Qbeta
    • Domingo E., Flavell R.A., and Weissmann C. In vitro site-directed mutagenesis: generation and properties of an infectious extracistronic mutant of bacteriophage Qbeta. Gene 1 (1976) 3-25
    • (1976) Gene , vol.1 , pp. 3-25
    • Domingo, E.1    Flavell, R.A.2    Weissmann, C.3
  • 36
    • 84884768224 scopus 로고    scopus 로고
    • Mutation, competition, and selection as measured with small RNA molecules
    • Domingo E., Parrish C.R., and Holland J.J. (Eds), Elsevier, Oxford, UK
    • Biebricher C.K. Mutation, competition, and selection as measured with small RNA molecules. In: Domingo E., Parrish C.R., and Holland J.J. (Eds). Origin and Evolution of Viruses. 2nd edit. (2008), Elsevier, Oxford, UK 65-86
    • (2008) Origin and Evolution of Viruses. 2nd edit. , pp. 65-86
    • Biebricher, C.K.1
  • 37
    • 0014343640 scopus 로고
    • 5-Azacytidine as a mutagen for arboviruses
    • Halle S. 5-Azacytidine as a mutagen for arboviruses. J. Virol. 2 (1968) 1228-1229
    • (1968) J. Virol. , vol.2 , pp. 1228-1229
    • Halle, S.1
  • 38
    • 0025284804 scopus 로고
    • Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis
    • Holland J.J., Domingo E., de la Torre J.C., and Steinhauer D.A. Mutation frequencies at defined single codon sites in vesicular stomatitis virus and poliovirus can be increased only slightly by chemical mutagenesis. J. Virol. 64 (1990) 3960-3962
    • (1990) J. Virol. , vol.64 , pp. 3960-3962
    • Holland, J.J.1    Domingo, E.2    de la Torre, J.C.3    Steinhauer, D.A.4
  • 39
    • 0030952877 scopus 로고    scopus 로고
    • Negative effects of chemical mutagenesis on the adaptive behavior of vesicular stomatitis virus
    • Lee C.H., Gilbertson D.L., Novella I.S., Huerta R., Domingo E., and Holland J.J. Negative effects of chemical mutagenesis on the adaptive behavior of vesicular stomatitis virus. J. Virol. 71 (1997) 3636-3640
    • (1997) J. Virol. , vol.71 , pp. 3636-3640
    • Lee, C.H.1    Gilbertson, D.L.2    Novella, I.S.3    Huerta, R.4    Domingo, E.5    Holland, J.J.6
  • 40
    • 0035811016 scopus 로고    scopus 로고
    • RNA virus error catastrophe: direct molecular test by using ribavirin
    • Crotty S., Cameron C.E., and Andino R. RNA virus error catastrophe: direct molecular test by using ribavirin. Proc. Natl Acad. Sci. USA 98 (2001) 6895-6900
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 6895-6900
    • Crotty, S.1    Cameron, C.E.2    Andino, R.3
  • 41
    • 0141633021 scopus 로고    scopus 로고
    • Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss
    • Lázaro E., Escarmís C., Pérez-Mercader J., Manrubia S.C., and Domingo E. Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss. Proc. Natl Acad. Sci. USA 100 (2003) 10830-10835
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 10830-10835
    • Lázaro, E.1    Escarmís, C.2    Pérez-Mercader, J.3    Manrubia, S.C.4    Domingo, E.5
  • 42
    • 0002184767 scopus 로고
    • Genetic studies of RNA phages
    • Zinder N.D. (Ed), Cold Spring Harbor Laboratory
    • Horiuchi K. Genetic studies of RNA phages. In: Zinder N.D. (Ed). RNA Phages (1975), Cold Spring Harbor Laboratory 29-50
    • (1975) RNA Phages , pp. 29-50
    • Horiuchi, K.1
  • 43
    • 0036789885 scopus 로고    scopus 로고
    • Molecular indetermination in the transition to error catastrophe: systematic elimination of lymphocytic choriomeningitis virus through mutagenesis does not correlate linearly with large increases in mutant spectrum complexity
    • Grande-Pérez A., Sierra S., Castro M.G., Domingo E., and Lowenstein P.R. Molecular indetermination in the transition to error catastrophe: systematic elimination of lymphocytic choriomeningitis virus through mutagenesis does not correlate linearly with large increases in mutant spectrum complexity. Proc. Natl Acad. Sci. USA 99 (2002) 12938-12943
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12938-12943
    • Grande-Pérez, A.1    Sierra, S.2    Castro, M.G.3    Domingo, E.4    Lowenstein, P.R.5
  • 44
    • 20644470543 scopus 로고    scopus 로고
    • Combination of a mutagenic agent with a reverse transcriptase inhibitor results in systematic inhibition of HIV-1 infection
    • Tapia N., Fernández G., Parera M., Gómez-Mariano G., Clotet B., Quiñones-Mateu M., et al. Combination of a mutagenic agent with a reverse transcriptase inhibitor results in systematic inhibition of HIV-1 infection. Virology 338 (2005) 1-8
    • (2005) Virology , vol.338 , pp. 1-8
    • Tapia, N.1    Fernández, G.2    Parera, M.3    Gómez-Mariano, G.4    Clotet, B.5    Quiñones-Mateu, M.6
  • 45
    • 38549085195 scopus 로고    scopus 로고
    • Effects of spatial competition on the diversity of a quasispecies
    • Aguirre J., and Manrubia S.C. Effects of spatial competition on the diversity of a quasispecies. Phys. Rev. Lett. 100 (2008) 038106
    • (2008) Phys. Rev. Lett. , vol.100 , pp. 038106
    • Aguirre, J.1    Manrubia, S.C.2
  • 46
    • 0026629079 scopus 로고
    • Replication of viruses in a growing plaque: a reaction-diffusion model
    • Yin J., and McCaskill J.S. Replication of viruses in a growing plaque: a reaction-diffusion model. Biophys. J. 61 (1992) 1540-1549
    • (1992) Biophys. J. , vol.61 , pp. 1540-1549
    • Yin, J.1    McCaskill, J.S.2
  • 47
    • 0027414961 scopus 로고
    • Evolution of bacteriophage T7 in a growing plaque
    • Yin J. Evolution of bacteriophage T7 in a growing plaque. J. Bacteriol. 175 (1993) 1272-1277
    • (1993) J. Bacteriol. , vol.175 , pp. 1272-1277
    • Yin, J.1
  • 48
    • 7444221704 scopus 로고    scopus 로고
    • The contribution of epistasis to the architecture of fitness in an RNA virus
    • Sanjuán R., Moya A., and Elena S.F. The contribution of epistasis to the architecture of fitness in an RNA virus. Proc. Natl Acad. Sci. USA 101 (2004) 15376-15379
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 15376-15379
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 49
    • 33846829804 scopus 로고    scopus 로고
    • HIV-1 protease catalytic efficiency effects caused by random single amino acid substitutions
    • Parera M., Fernández G., Clotet B., and Martínez M.A. HIV-1 protease catalytic efficiency effects caused by random single amino acid substitutions. Mol. Biol. Evol. 24 (2007) 382-387
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 382-387
    • Parera, M.1    Fernández, G.2    Clotet, B.3    Martínez, M.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.